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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020998 ID=TCONS_00020998|Name=TCONS_00020998|organism=Clytia hemisphaerica|type=transcript|length=3397bpRun BLAST on NCBI protein sequence of TCONS_00020998-protein >TCONS_00020998-protein ID=TCONS_00020998-protein|Name=TCONS_00020998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=862bp MTTWQSLNKGNQDMVDKFTRLAIIQTKEVENAFRCVNRAAFVSNDLLSEARun BLAST on NCBI transcript from alignment at sc0000376:55327..61307- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020998 ID=TCONS_00020998|Name=TCONS_00020998|organism=Clytia hemisphaerica|type=transcript|length=5981bp|location=Sequence derived from alignment at sc0000376:55327..61307- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000376:55327..61307- >TCONS_00020998 ID=TCONS_00020998|Name=TCONS_00020998|organism=Clytia hemisphaerica|type=CDS|length=23301bp|location=Sequence derived from alignment at sc0000376:55327..61307- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020998 vs. Swiss-Prot (Human)
Match: PCMD1 (Protein-L-isoaspartate O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=PCMTD1 PE=1 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 2.133e-45 Identity = 85/232 (36.64%), Postives = 130/232 (56.03%), Query Frame = 1
Query: 166 SLNKGNQDMVDKFTRLAIIQTKEVENAFRCVNRAAFVSNDLLSEAFSDVPIKGQPHLHLSAPHIYATILEDLELEPGMSFLNIGSGTGYFSCLVGYLIKPNGVNHGIEQHEDLVNFAKDHVKDFLRNGPQ-DTVEVCPPLFISGNAYRLNPNQMKYDRLYCGGACPLGTITFFLDFLKVGGFLIAPVGSKLVKLERISHREGVKTVLSDVCFNPLTQLESSDKTKLKAGLLP 858
S + N D++D I+T+ VE AFR ++R + A+ D+ K ++HLSAP IY+ ++E L+L+PG+SFLN+GSGTGY S +VG ++ P G+NHGIE H D+V +AK+ ++ F++N D E C P F+ GN ++ + +YDR+YCG + LKVGG L+ P+ +L ++ R + V F PL Q +D K + LP
Sbjct: 6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWK-HGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLP 236 The following BLAST results are available for this feature:
BLAST of TCONS_00020998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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