TCONS_00020984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020984
Unique NameTCONS_00020984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020984 ID=TCONS_00020984|Name=TCONS_00020984|organism=Clytia hemisphaerica|type=transcript|length=2678bp
GGTCTGTAAATGAAATTCATgtattttataaacaaaacgaAGAAGGATAA
AATTTAAATGCTGATATTGACAAAAATGAGAGTGTATAAATAAGTTAaag
tttaaaataaatattcaaaatattttcctacatttttttattacaaataa
ATACTTAATCTAGCTGTCAAGAACATTGTTAAAAGAAAACTGATGCTCAA
TAAATTTCCCAACCATCGACGGTAGAAAGGTAAAATGCCGATCGAAATTA
AATGAAGTATAACCGAAGACTAAAGTGAGCCTTCTTTGTATGATTTTATG
TCGTTGCTTGGTTTGCACTTAAAAGTTACATTTAACGCCTCTGCTTACTC
TGCCCTGGAGCTCAACtccattttcaaattcatcCCGCCTCCTAAATTAT
TCCCTTTCTAGTGACCTAGAATCGTCTAGGAAAAATGTACAAcgcaaaat
caaacaaaaagctTTATATCCAATCAATCATCCGAATTGGGACACAAGgc
attaatttttcttttgcttcTATGCCTTCTAACCTTCGGTTATACTTTAT
AATCCGGAGGGCGTCACCAAAACTACTGTTCAGAATACTGTTAAAAAGAG
CGAATGATGAGCAACCATGAAGATATCATAATATTATGATCAATAGAGAT
AAAATAAACTTAGCCTGAAATATTTGTACGTATTGCATATAAAACCTATT
CGTGAAGGGGATAATATTCAGAGAGATAACCAAAAACTCCTGAATTCAAA
TAGTCTTACTTGAATAGGGATTtgactaaaatgaaaataatcatttctaa
tagCGGCTAACGTAAACATATACCTATTCACTTATGGACCCTTGCGCTAA
AAGCAGCTAAAAGACGTGCAAAAATATGATAAGTTAGGACTGGAGAATTT
TTCCCGAGGAATCCCTTATTGTCTAATTGTGTTGGATGGTGACAAATATT
CTTGATAAATAAATGACTGCATTTGTCACTGTCTAAGATAAAAATTTCCC
CGACAGTTTGCTAGACGTGGCCCTAGTCTAACAGAAGTTCAAGTACATCA
CATCAAGCAATGGACCAGGAATTTTTCTCAGAACCTAACAAAAAATTTTC
GTTTAAAGGTCCAAGCTACAGTTTGTCGACTTTTTTATCTACCAATGGTG
ACTTGGTTGGTTGATACTCAGATGGGTTGTTATTGTTGATGTTCAATTTG
ACAATACTACAATTACCGTCGCTGTATCGAATCGACGTTTCGTAAGCTCT
CTGCGGCGTCAAATACGGAGAAGACGTGGCACGAGTGCATCCGTCATCTG
TAAAAGACGTACGGTTACTGGAAGGCGTACGGTGAATCGAGAAACGGTTT
AACAAGCCATGAACGTCTAATTTACTCGGGCGACGACTTGAAAAGAAATC
GACAGTTTGTTCATCATTTTTACGGCAAATATAAGCGATAATTGTTTTAT
AAAATTCTTTGAATGTTTCACGAAAGCGTTCGTTAAACACATTGTAAATA
ATTGGGTTTAAACAGCTATTGACGTAGAGGAGCATGTATGAGCCCAACAA
AATGTCGTTGAAATATTTAGTATGGGCACCATGGAATTCAGATACCAATC
CCATCACATGGTAGGGTAGAATACAGAAGAAGAAAGATGCAGTGATAATG
ACCAACAGTTTCACCACCTTTTTATTCTcagtctgtttttttttgttcac
tgcCAACATAGCGTCTGAGGCTTGCGTGCGAAAGGAGAGTTCGTATACGA
TGTAACAATAGGCTACACTCATGATGAAGAGAGGTAAAACAAACTGGAAA
ACGAAAATAGCCACTGTATATATACGTTTCTGATCATCTGTCCACGTTTC
CCGGCAACCGTTTGCTTCGTCATATCGTAGTATACTGATGTAAGGGATCA
CGAAGATAACGCTGAGGATCCAGATCACTCCGATCATGATTTTCGCGAAT
CGCACGTTCGGTTGCGTTCGAAAGGGTTTCGTGATGGCCCAGTATCGCGA
GAAACTTAATACGACTAACGTGAGAACACATCCGTAGATGGAGGCAGTTT
GTATGGGGTAAAAGATATGACAAAAAACACTACCGTAAATCCATTTGTTC
TGAATTTCGATGGGTATTTCGAGAGGAATACAAATAACGGCAACAGAAAG
GTCGGCGATGGCAAGGTTAAGcaataaccaattagtgaatGTTTGCATAC
GTCGTTTCTTGGTGATAATAAGAACAACAATGGAATTGCCAATGAGTATA
ATCAACATGATTAGAATCAACATGGCCACAACAACTGGCATGGAGACGAG
GTGATAGCCTCCACCACCAGCATATTCGTCAAATTCATCTGTATTATTGC
CAGAACTGTTAGCACCATAAGAGCTTCGCCAGCTCGAGAGTGAAGGATAA
AAGATTTGTGATGGTGCAGAGTTATTGAACATCAAAGACATCTTCATTTG
AATGGTGGCCAACCAATTCATTCACAAAGTATCAATTTGATGTGTATTTT
CCTCtgtaaaagtgaaaaaaaaagatataaaatcNTCAAAGACATCTTCA
TTTGAATGGTGGCCAACCAATTCATTCACAAAGTATCAATTTGATGTGTA
TTTTCCTCtgtaaaagtgaaaaaaaaaagatataaaatttttgttcttGT
CAAAGTTTTAACGTCTTCCCAGTTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000376:118165..120897+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020984 ID=TCONS_00020984|Name=TCONS_00020984|organism=Clytia hemisphaerica|type=transcript|length=2733bp|location=Sequence derived from alignment at sc0000376:118165..120897+ (Clytia hemisphaerica)
GGTCTGTAAATGAAATTCATgtattttataaacaaaacgaAGAAGGATAA
AATTTAAATGCTGATATTGACAAAAATGAGAGTGTATAAATAAGTTAaag
tttaaaataaatattcaaaatattttcctacatttttttattacaaataa
ATACTTAATCTAGCTGTCAAGAACATTGTTAAAAGAAAACTGATGCTCAA
TAAATTTCCCAACCATCGACGGTAGAAAGGTAAAATGCCGATCGAAATTA
AATGAAGTATAACCGAAGACTAAAGTGAGCCTTCTTTGTATGATTTTATG
TCGTTGCTTGGTTTGCACTTAAAAGTTACATTTAACGCCTCTGCTTACTC
TGCCCTGGAGCTCAACtccattttcaaattcatcCCGCCTCCTAAATTAT
TCCCTTTCTAGTGACCTAGAATCGTCTAGGAAAAATGTACAAcgcaaaat
caaacaaaaagctTTATATCCAATCAATCATCCGAATTGGGACACAAGgc
attaatttttcttttgcttcTATGCCTTCTAACCTTCGGTTATACTTTAT
AATCCGGAGGGCGTCACCAAAACTACTGTTCAGAATACTGTTAAAAAGAG
CGAATGATGAGCAACCATGAAGATATCATAATATTATGATCAATAGAGAT
AAAATAAACTTAGCCTGAAATATTTGTACGTATTGCATATAAAACCTATT
CGTGAAGGGGATAATATTCAGAGAGATAACCAAAAACTCCTGAATTCAAA
TAGTCTTACTTGAATAGGGATTtgactaaaatgaaaataatcatttctaa
tagCGGCTAACGTAAACATATACCTATTCACTTATGGACCCTTGCGCTAA
AAGCAGCTAAAAGACGTGCAAAAATATGATAAGTTAGGACTGGAGAATTT
TTCCCGAGGAATCCCTTATTGTCTAATTGTGTTGGATGGTGACAAATATT
CTTGATAAATAAATGACTGCATTTGTCACTGTCTAAGATAAAAATTTCCC
CGACAGTTTGCTAGACGTGGCCCTAGTCTAACAGAAGTTCAAGTACATCA
CATCAAGCAATGGACCAGGAATTTTTCTCAGAACCTAACAAAAAATTTTC
GTTTAAAGGTCCAAGCTACAGTTTGTCGACTTTTTTATCTACCAATGGTG
ACTTGGTTGGTTGATACTCAGATGGGTTGTTATTGTTGATGTTCAATTTG
ACAATACTACAATTACCGTCGCTGTATCGAATCGACGTTTCGTAAGCTCT
CTGCGGCGTCAAATACGGAGAAGACGTGGCACGAGTGCATCCGTCATCTG
TAAAAGACGTACGGTTACTGGAAGGCGTACGGTGAATCGAGAAACGGTTT
AACAAGCCATGAACGTCTAATTTACTCGGGCGACGACTTGAAAAGAAATC
GACAGTTTGTTCATCATTTTTACGGCAAATATAAGCGATAATTGTTTTAT
AAAATTCTTTGAATGTTTCACGAAAGCGTTCGTTAAACACATTGTAAATA
ATTGGGTTTAAACAGCTATTGACGTAGAGGAGCATGTATGAGCCCAACAA
AATGTCGTTGAAATATTTAGTATGGGCACCATGGAATTCAGATACCAATC
CCATCACATGGTAGGGTAGAATACAGAAGAAGAAAGATGCAGTGATAATG
ACCAACAGTTTCACCACCTTTTTATTCTcagtctgtttttttttgttcac
tgcCAACATAGCGTCTGAGGCTTGCGTGCGAAAGGAGAGTTCGTATACGA
TGTAACAATAGGCTACACTCATGATGAAGAGAGGTAAAACAAACTGGAAA
ACGAAAATAGCCACTGTATATATACGTTTCTGATCATCTGTCCACGTTTC
CCGGCAACCGTTTGCTTCGTCATATCGTAGTATACTGATGTAAGGGATCA
CGAAGATAACGCTGAGGATCCAGATCACTCCGATCATGATTTTCGCGAAT
CGCACGTTCGGTTGCGTTCGAAAGGGTTTCGTGATGGCCCAGTATCGCGA
GAAACTTAATACGACTAACGTGAGAACACATCCGTAGATGGAGGCAGTTT
GTATGGGGTAAAAGATATGACAAAAAACACTACCGTAAATCCATTTGTTC
TGAATTTCGATGGGTATTTCGAGAGGAATACAAATAACGGCAACAGAAAG
GTCGGCGATGGCAAGGTTAAGcaataaccaattagtgaatGTTTGCATAC
GTCGTTTCTTGGTGATAATAAGAACAACAATGGAATTGCCAATGAGTATA
ATCAACATGATTAGAATCAACATGGCCACAACAACTGGCATGGAGACGAG
GTGATAGCCTCCACCACCAGCATATTCGTCAAATTCATCTGTATTATTGC
CAGAACTGTTAGCACCATAAGAGCTTCGCCAGCTCGAGAGTGAAGGATAA
AAGATTTGTGATGGTGCAGAGTTATTGAACATNCCAGCTCGAGAGTGAAG
GATAAAAGATTTGTGATGGTGCAGAGTTATTGAACATCAAAGACATCTTC
ATTTGAATGGTGGCCAACCAATTCATTCACAAAGTATCAATTTGATGTGT
ATTTTCCTCtgtaaaagtgaaaaaaaaagatataaaatcNTCAAAGACAT
CTTCATTTGAATGGTGGCCAACCAATTCATTCACAAAGTATCAATTTGAT
GTGTATTTTCCTCtgtaaaagtgaaaaaaaaaagatataaaatttttgtt
cttGTCAAAGTTTTAACGTCTTCCCAGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011769XLOC_011769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020984-exon-sc0000376-1491911889:118165..120594TCONS_00020984-exon-sc0000376-1491911889:118165..120594Clytia hemisphaericaexon
TCONS_00020984-exon-sc0000376-1510915933:118165..120594TCONS_00020984-exon-sc0000376-1510915933:118165..120594Clytia hemisphaericaexon
TCONS_00020984-exon-sc0000376-1575043694:118165..120594TCONS_00020984-exon-sc0000376-1575043694:118165..120594Clytia hemisphaericaexon
TCONS_00020984-exon-sc0000376-1491911889:120650..120897TCONS_00020984-exon-sc0000376-1491911889:120650..120897Clytia hemisphaericaexon
TCONS_00020984-exon-sc0000376-1510915933:120650..120897TCONS_00020984-exon-sc0000376-1510915933:120650..120897Clytia hemisphaericaexon
TCONS_00020984-exon-sc0000376-1575043694:120650..120897TCONS_00020984-exon-sc0000376-1575043694:120650..120897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:118165..120897 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.86445	3.12156	18.6648	26.015	2.03651e-08	0.720577	1.00488	1.41909	0	0	0	0	0	0	0	0	0	0.952562	0	0	3.30213	4.3004	1.94349	2.86199	14.2001	15.3533	1.22051	2.19636	0	1.12149
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR000611NPY_rcpt
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004983neuropeptide Y receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004983 neuropeptide Y receptor activity
Blast
[Close]
BLAST of TCONS_00020984 vs. Swiss-Prot (Human)
Match: GALR2 (Galanin receptor type 2 OS=Homo sapiens GN=GALR2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.626e-33
Identity = 89/321 (27.73%), Postives = 166/321 (51.71%), Query Frame = -1 
Query: 1434 GANSSGNNTDEFDEYAGGGGYH--LVSMPVVVAXXXXXXXXXXIGNSIVVLIITKKRRMQTFTNWLLLNLAIADLSVAVICIPLEIPIEIQNKWIYGSVFCHIFYPIQTASIYGCVLTLVVLSFSRYWAITKPFRTQP--NVRFAKIMIGVIWILSVIFVIPYISILRYDEANG---CRETWTDDQKRIYTVAIFVFQFVLPLFIMSVAYCYIVYELSFRTQASDAMLAXXXXXXXXXXXXXKLLVIITASFFFCILPYHVMGLV---SEFHGAHTKYFNDILLGSYMLLYVNSCLNPIIYNVFNERFRETFKEFYKTIIA 2366
            G   +GN +    +  GGGG+H   V +P++ A++ L+  +   GN++V+ ++ +  +  + TN  +LNL +ADL   + C+P +  I   + W++GS+ C   + +   +++    TL  +S  RY AI  P  ++     R A   IG+IW LS++F  PY+S  R  +      C   W+  ++R   +  FVF ++LP+ ++ + Y      L +  +A D + A     +   +KV ++++I+ A F  C +P+H + L     +F      Y   IL  S+++ Y NSC+NPI+Y + ++ FR+ F+     ++ 
Sbjct:    5 GCPGAGNAS----QAGGGGGWHPEAVIVPLLFALIFLVGTV---GNTLVLAVLLRGGQAVSTTNLFILNLGVADLCFILCCVPFQATIYTLDGWVFGSLLCKAVHFLIFLTMHASSFTLAAVSLDRYLAIRYPLHSRELRTPRNALAAIGLIWGLSLLFSGPYLSYYRQSQLANLTVCHPAWSAPRRRAMDICTFVFSYLLPVLVLGLTY---ARTLRYLWRAVDPV-AAGSGARRAKRKVTRMILIVAALFCLCWMPHHALILCVWFGQFPLTRATYALRIL--SHLVSYANSCVNPIVYALVSKHFRKGFRTICAGLLG 312
The following BLAST results are available for this feature:
BLAST of TCONS_00020984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GALR23.626e-3327.73Galanin receptor type 2 OS=Homo sapiens GN=GALR2 P... [more]
back to top