TCONS_00020979 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020979
Unique Name	TCONS_00020979
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3069

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000376:70454..78803+

transcript sequence

>TCONS_00020979 ID=TCONS_00020979|Name=TCONS_00020979|organism=Clytia hemisphaerica|type=transcript|length=3069bp
TGGCGCGCTAAATTTTTCTTATGTTTTCTCCACCACAAGGTCTATTATGT
AACTTATCCCACTTTTACAATGAAAACCTTTGAATCAATTAGTACCAACG
GTGGAGGTAGTACTTAGTACCCTCaacgaaataaaaacaaaccaaaacgc
GCCAAAATTCATTCTTTGATGGTTGACGCGGGAAAGACACACTTATCACA
AAGCGTACCTTCATTTCCACCAAATTCTACTGTTTTTTACCTTTATCAAA
TCTGTTATCATGGCCAACGAAAATGTACAAACAACTCCTGATTTTGATTC
AAACATGTTCGTTTTGAAAAGAGATGGACGTCAGGAGGAAtgtcattttg
acaaaatcacaTCAAGAATCAAAAAGCTCTGTTTTGGAGATATCAATATG
AAGTATGTTTCTCCTTATGCTGTTACATTGAAAGTTATTCAAGGGATGTA
TTCCGGGATCACAACAGTTGAACTTGACACTTTGGCTGCCGAAATATCTG
CCTCCATGACAACTAAGCATGTGGATTATGGAAAACTTGCAGCCAGAATT
GCTATCTCAAATCTTCACAAAGAAACAAAGAAGAAGTTCAGTGACACTAT
CCATGACCTTTACACTTATGTGAATCCGGAAATCAAGAAACCTTGTCCCA
TGATTTCTAAAGAAACTTATGAAATTGTTCAAGAAAATAAAGAGAAATTG
GATGGTGCCATCATTTCAGGCAGAGATTTTGAATACAATTACTTTGGATT
CAAGaccCTCGAAAGATCGTACCTTTTAAGGATCAATGGAAAGCCTGCAG
AGCGTCCACAGCATATGTTAATGAGAGTATCAGTTGGTATTCATGGTAAA
GATATTGAGGCTGCTATTGAAACGTACAATCTGATGTCTGAAAAATGGTT
CACACACGCCTCTCCTACTCTTTTCAATTCTGGTACCCCAAGACCTCAGA
TGTCAAGTTGTTTTTTGTTAGCAATGAGAGATGATAGCATTGAAGGCATC
TTTGACACTCTAAAACAGTGTGCTGTAATTTCAAAGTGGGCTGGTGGTAT
TGGTCTTCACACACATTGTATAAGAGCTTCTGGAAGCTACATAGCTGGGa
CAAATGGACACTCAAATGGTTTGGTTCCAATGTTGCGTGTTTACAACAAT
GCTGCTCGTTATGTTGATCAAGGTGGAAACAAGAGACCTGGATCTATCGC
TGTTTATTTGGAGCCATGGCATGCTGATATTCTGGAATTCTtagatttga
agaaaaacactggaaaagaGGAACAGAGAGCCCGTGATTTGTTCTTTGCA
CTCTGGATGTGTGACTTATTCATGAAAAGAGTTGAAACTAAAGGAACTTG
GTCCTTGATGTGTCCACATGAATGTCCAGGTCTCTCAGACTCCTATGGtg
aagaatttgaaaagttatatgAAGGTTATGAAAAAGAAGGTAAATTCAGA
AGGCAAATTCCAGCTCAAAAACTTTGGTATGCAATCTTGGAGTCTCAAGT
CGAAACTGGCACACCTTACATATTATACAAAGATTCTTGTAATAAGAAAA
GTAACCAAAAGAACCTTGGTGTCATTAAATGTAGTAATCTTTGCACTGAG
ATTGTTGAATACACCGCTCCTGATGAGATTGCTGTTTGCAATTTGGCATC
TATTGCTGTCAACAAATTTGTCACTGAAAATAGAGAAGAAGTTCAAATGC
CAAATGGagaaattaaaataaagaaGAGTGGAACTTTTGACTTCAACAAA
TTGAAAGAAGTTGCCAAAACCGTCACTAAAAATCTGAACAAAGTTATTGA
CAGGAATTTCTACCCTTGTGAAGAAGCTCGCAACTCCAACATGAGACACA
GACCCATTGGTATTGGAATCCAGGGTCTTGCTGATGCGTTCATTCTCATG
AGATATCCTTTCGAATCAGAAGAAGCCGCAGATCTGAACAGAAAAGTCTT
TGAAACAATATATTACGGTGCATTGGAATCCTCATGTGAATTGGCTGAGC
GTGACGGCACTTATAAAACTTATCCTGGTTGTCCAGTTAGCCAAGGAATT
TTGCAATACGACATGTGGAATGTTACCCCTTCCAATATGTGGGATTGGGC
AGCACTCAAAGAAAAGATTGCTAAACACGGCATCAGAAACAGTCTTCTGT
TAGCTCCAATGCCTACAGCATCAACAGCTCAAATTCTTGGCAATAACGAA
TCGTTTGAaccattcaccagtaacatctaTTCAAGACGTGTTTTATCTGG
CGAATTTCAAGTGGTCAATAAACATTTGGTTAAAGATCTTACTGAATTAG
ATTTGTGGAATGATGATATGAAAAACACCTTGGTAGCTCATAACGGATCT
GTACAGAATATTGACGAAATTCCGAGCGAGATCAAAGCATTGTACAAGAC
AGCCTgggaaatgaagatgaagacaATGATCAACATGGCTGCTGATCGAG
CTGCTTTCATTGACCAATCTCAGTCATTCAATATCTTTGTTGGAGTACCA
AACTTTGCTAAATTGACCGCCATTCACTTTTACGGATGGAAAAAGGGATT
GAAGACTGGTATGTACTACTTGCGAACGAAGCCAGCTGCAAACGCTATTC
AATTCACTGTTGACCAAACCAAACTGAAAAATCGCGAAAAGAACGAAGCT
GACATTATGTGCTCTATCGATAACAAAGAAGCCTGCATTTCTTGCTCAGG
TTAACAAGTGAGACTTTAGATATTGTTTAAGTGTGGTATCTATTGAATCT
GCGCCGTAGATGTGAATACTGTGTGTGCAGTTACCCTCCGGGAAGGGAAA
TTTCAAAGGACTCAATAAAAAGATGTGtatatatttctaaaatttgtata
aaaataatctACTTATATTTAGTATTCGGTTacgtttaacttttatttac
ttAGCATAACATGTAAAGAAATaacaaaagacaaaaaattttaaatttgc
aaaatattttgttttgcaaATTCATTTTCTAGataattttgatcattttt
attAATGAACTTGTAAAACTATATAAACCTTCAtagaaaaactacaaaaa
tataATACAGATCAAAAAT

Run BLAST on NCBI

transcript from alignment at sc0000376:70454..78803+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020979 ID=TCONS_00020979|Name=TCONS_00020979|organism=Clytia hemisphaerica|type=transcript|length=8350bp|location=Sequence derived from alignment at sc0000376:70454..78803+ (Clytia hemisphaerica)
TGGCGCGCTAAATTTTTCTTATGTTTTCTCCACCACAAGGTCTATTATGT
AACTTATCCCACTTTTACAATGAAAACCTTTGAATCAATTAGTACCAACG
GTGGAGGTAGTACTTAGTACCCTCaacgaaataaaaacaaaccaaaacgc
GCCAAAATTCATTCTTTGATGGTTGACGCGGGAAAGACACACTTATCACA
AAGCGTACCTTCATTTCCACCAAATTCTACTGTTTTTTACCTTTATCAAA
TCTGTTATCATGGCCAACGAAAATGTACAAACAACTCCTGATTTTGATTC
AAACATGTTCGTTTTGAAAAGAGGTAAGATATcagtttctttatttcttt
tctttgtcagtcagggaaatccgcCCTCAATCATCGCGGCAGTAATTtct
tactgcaattgcggtataaacgtcacaatttttcatgtaccgcaattgca
gtatacccaagaaacagaattcaagattcaatgagaaaacaggcaatttt
tgtacataattgatcgtctttttaacgcacagacaaagtattttttccgt
agatcagattcttttaataaagaaaagctaTCTTCTCGTACAATTtttta
cagtcgatgtttgtttatctttgccgaccagcactatatgtagcTGTTAT
AAGCCTTTGTGGGCAATCACGATTGAAAACTACCGCAAATGCAGTATACT
GCAATTGAGGGATTCAATCAAGAAACTTTTGATTTGAACTCCTAACAAAT
ACAGGTATATGATAGGATATCCATATGCAGGGTTTCCTGAAAAGTctcaa
tttttctaattttataggaggaatttgagaaaaatgtaCTGATTTTGATC
ACTTTTTTGTCCTAATGTTTTGTAGAACTTTCTTTGTTGAAATGTTCTCT
AGATTCCATCATCAAAAAAGcttgaaacaatatttttaacatcttgagaa
ttttacattttctcggTTGCTGGTCTCAATGTTGTCAAATTTTTGTGGAA
ACCCATCAAAATACTGTCATTAGATCATCTTTTATAAGGCGGGTCTTTCA
AGACTATTGTAccttaaaaaatgaaatcagcAGGATTTATGTTGTGTTTT
TACAATGCTTCCTAATAATTGTTCGTTGTGTTCGCGTCATTTCCAGCCCC
AAAATGTGAGTGGCTTGCTCGGCATCTTAAATCATCAGAAAAATGCGTCC
AAATATAGGCTTGTTCaatcagtgtagacctaactcttcacacaaaattt
acgcgaaacgcatgtttggacttaagccaaagtcccgcaaagacgggaca
aaaatcagttttttaaagtttgcgaaaaaacgccacatagaagatctttc
aaattcattatgtgaatagagcagtaaaaaatacaactattttgtttttc
cttttttttgcaaaagttctaggaatgaaaataaagagataatgataatt
gaatactatcaattgatgacccgcggcacaCGTAAAACTAGAATCGCTTc
acgtactcttcgcttgagaaaatgattgacagattgaagctTTTCACCTG
CGCAtgagttcgcggagcgttctcggctcaatcattggaccgcgctaaaa
atggtagactgagtaTATCCCTGACTACCAATTGGGCCATTTTCAAACCA
TGCAGGAATATTGagaaacttttccagggggtctgagccttgattttcca
aggggattattaaaggtttccaggggTGTCAACCCCCAATTTCCATGAGA
TagtttgttatccaaaatttcAAGGGGGTTAGTGAAAAATTTGTTGATGC
CCCCTGtacaatctttttttgaatagCCCAATTAGTTGGTCAAAAGAGCC
CTGAATGTGTACCATAGTCTGTTACAGCTTCActaaaagttttagaaaaa
taacaGGAAACAGTTGTGGTGGGGATTTTGAAAAACAGACCAGAATGCTG
AAAATAACTATTCTTAAAGCCAACCTTGATCACAAACAGAACTTTAAAAT
GTTGTGAAATAACTTTTATATGAAAATGTGCCCGGAGTGGATTTAGAAAA
GACGTTGAGCTAAAAGTTTTGTTTGGATATAATTTCCCTAATGCCCTTTT
TATTTTACCCAGTACCATATTATAGAGACTGATGATTTTTGTTGCATATG
ATTTACAGATGGACGTCAGGAGGAAtgtcattttgacaaaatcacaTCAA
GAATCAAAAAGCTCTGTTTTGGAGATATCAATATGAAGTATGTTTCTCCT
GTAAGTAAAAAGCTTATTTAGACTGTCCTCTGGTGGATTTttagttttat
gttttaaaaactttatttttaaagaTTCAGTAGATTTTTgcttttcccaa
attttcctcAGTAATTCTAATTTGGCATTGGCATTCCGCGTTTGCCAACA
TAGAAGTGCCAAtgcaaaaaaatctgtataagAAAGGCTGTCTCCTGTGT
TCACCGTAAATCACTATTGATTCCTTGGTATTTTCTTCTAGTATGCTGTT
ACATTGAAAGTTATTCAAGGGATGTATTCCGGGATCACAACAGTTGAACT
TGACACTTTGGCTGCCGAAATATCTGCCTCCATGACAACTAAGCATGTGG
ATTATGGAAAACTTGCAGCCAGAATTGCTATCTCAAATCTTCACAAAGAA
ACAAAGAAGAAGTTCAGTGACACTATCCATGACCTTTACACTTATGTGAA
TCCGGAAATCAAGAAACCTTGTCCCATGATTTCTAAAGAAACTTATGAAA
TTGTTCAAGAAAATAAAGAGGTAACTTTATCAAGCActtgttttgagaaa
atgtGTTAATTTTTCTTCTGGTTTTCTTAAATCATATAGCCCTTGCAAAA
ATCTTTTAATCCACACCCACAGTCTTCATTCAACCCATAAATAGATGTAG
TAGGTATGTTTTTGAGAACATTGTCTTTTGCAAATCCCACAAGTTGCTCT
GCTCTTACTCTTAGAAATTGGATGGTGCCATCATTTCAGGCAGAGATTTT
GAATATAATTACTTTGGATTCAAGGTGAGTTTGTTTCAGATCAACTTCAA
CTTgtaccttaaccctattcaacctaggcttttaggggcggttcagaact
aggggggggggggNcttttcccaaattttcctcAGTAATTCTAATTTGGC
ATTGGCATTCCGCGTTTGCCAACATAGAAGTGCCAAtgcaaaaaaatctg
tataagAAAGGCTGTCTCCTGTGTTCACCGTAAATCACTATTGATTCCTT
GGTATTTTCTTCTAGTATGCTGTTACATTGAAAGTTATTCAAGGGATGTA
TTCCGGGATCACAACAGTTGAACTTGACACTTTGGCTGCCGAAATATCTG
CCTCCATGACAACTAAGCATGTGGATTATGGAAAACTTGCAGCCAGAATT
GCTATTTCAAATCTTCACAAAGAAACAAAGAAGAAGTTCAGTGACACTAT
CCATGACCTTTACACTTATGTGAATCCGGAAATCAAGAAACCTTGTCCCA
TGATTTCTAAAGAAACTTATGAAATTGTTCAAGAAAATAAAGAGGTAACT
TTATCAAGCActtgttttgagaaaatgtGTTAATTTTTCTTCTGGTTTTC
TTAAATCATATAGCCCTTGCAAAAATCTTTTAATCCACACCACAGTCTTC
GTTCAACCCATAAATAGATGTAGTAGGTATGTTTTTGAGAACATTGTCTT
TTGCAAATCCCACAAGTTGCTCTGCTCTTACTCTTAGAAATTGGATGGTG
CCATCATTTCAGGCAGAGATTTTGAATACAATTACTTTGGATTCAAGGTA
AGTTTGTTTCAGATCAACTTCAActtgtaccttaagggaacttatatTGG
TGagatttgaccattttttgaatttgggCTGATTTGGGCTAAAATTGATA
TTCGCCATAATTTATACTAAAGGGCATCTTATGCatctaccatttgctta
cacagtaGTTTTAAACAAgacaaaaaacaactttctccCTCTTATGCCAA
ACAGGCATGAGAAGAATGCCTCCTTTTATATCATAACGTACACTTTATTA
GATTTGCATTATGGGTCGAGtttgtttgaatttctttttagaccCTCGAA
AGATCGTACCTTTTAAGGATCAATGGAAAGCCTGCAGAGCGTCCACAGCA
TATGTTAATGAGAGTATCAGTTGGTATTCATGGTAAAGATATTGAGGCTG
CTATTGAAACGTACAATCTGATGTCTGAAAAATGGTTCACACACGCCTCT
CCTACTCTTTTCAATTCTGGTACCCCAAGACCTCAGATGTCAAGTTGTTT
TTTGTTAGCAATGAGAGATGATAGCATTGAAGGCATCTTTGACACTCTAA
AACAGTGTGCTGTAATTTCAAAGTGGGCTGGTGGTATTGGTCTTCACACA
CATTGTATAAGAGCTTCTGGAAGCTACATAGCTGGGGTAAGCTTCAATGA
TATATTTGAGTGATTATTAAAGTAAAATCTTTCCTAGTAGATTTCTTtgc
aaaaatagaaataagttGCAAAAAACAGATGTTGAAACAAGGTTCAAAAT
CCAAAGTCTCAAAGAAATTCCAAGTGTTTTGACCCTCTGTTATATTATCT
TATATTTGTATATATTGTAAAGGtattttaaagtcattttattcttttaa
aaatatgaacaaaatttttgtttgatttagaCAAATGGACACTCAAATGG
TTTGGTTCCAATGTTGCGTGTTTACAACAATGCTGCTCGTTATGTTGATC
AAGGTGGAAACAAGAGACCTGGATCTATCGCTGTTTATTTGGAGCCATGG
CATGCTGATATTCTGGAATTCTtagatttgaagaaaaacactggaaaaga
GGAACAGGTAACCTACAGTTTATTCACAGGATCCTGTGAAAGTTGAACCA
CTTAACAAAAGTGAGATTCTTTGGATCAAAATTCTATAATACTTTGTATT
TTGCTTTTTAGAGAGCCCGTGATTTGTTCTTTGCACTCTGGATGTGTGAC
TTATTCATGAAAAGAGTTGAAACTAAAGGAACTTGGTCCTTGATGTGTCC
ACATGAATGTCCAGGTCTCTCAGACTCCTATGGtgaagaatttgaaaagt
tatatgAAGGTTATGAAAAAGAAGGTAAATTCAGAAGGCAAATTCCAGCT
CAAAAACTTTGGTATGCAATCTTGGAGTCTCAAGTCGAAACTGGCACACC
TTACATATTATACAAAGATTCTTGTAATAAGAAAAGTAACCAAAAGGTAT
GTAGTTTTGACTCTTTCATAATTATCATTTGCAAAGTAGTTCAAATTTTG
TTTACCAAATGTTATTCTTTACTTAGATTTCTGCTAACTTGTATTCAAAG
TTATTTCAGCTTTGATTAAACTTAAAGAGATacacactcttttttataag
aatacttgTTTTTGGCTGAGGGCGagctattcttatttttcaattgaTCT
AAACAATACGCCTATTGTTTTAACTCTGAAATCTCaacctgatattctta
taaaaatttaaaaaagtgtgtataaACTGTTGTAACATTCTTAGAAAATA
AAGTATATCTTATATAAAGTATATATAATTTACCTTGGCTAGCTATTAAA
AATTTGATTGCTCAATAAACAATTGACTGATTTTTTATTACCCAACATGC
CCAGTCAAActtatatttttctattctaGAACCTTGGTGTCATTAAATGT
AGTAATCTTTGCACTGAGATTGTTGAATACACCGCTCCTGATGAGGTAAT
CCTAATTTCCTTAAACTGTTATCAAACGATAATGAACCAAACTAAGGAAA
ATTCTACTGCTCGTGGCAATGAACTCaaaaatacaaacttaaatTTCCGG
ACTAAAGACAAATgcaaaaaaggttttaaaatgACGTTTGGTGAGGACTG
AGAgtttttttttatctggttatccctttgaGCTGTGTccataaacattt
ttttgtaacCTCTGGTGAGACCAAGACCCATAATTCAATCAATATCTGTT
ATCCTTTAGATTGCTGTTTGCAATTTGGCATCTATTGCTGTCAACAAATT
TGTCACTGAAAATAGAGAAGAAGTTCAAATGCCAAATGGagaaattaaaa
taaagaaGAGTGGAACTTTTGACTTCAACAAATTGAAAGAAGTTGCCAAA
ACCGTCACTAAAAATCTGAACAAAGTTATTGACAGGAATTTCTACCCTTG
TGAAGAAGCTCGCAACTCCAACATGAGACACAGACCCATTGGTATTGGAA
TCCAGGTAATGTTTTATTTGTATCATAATTAGCCGCTTTAGATTCAACTG
GCAAATGATGACTTTGTGCCCTGAATTGGAAATCTGTGCCTTCTAAACAA
ACTTGAATGAGGATTTTTACTGTTCTTTATCTTATCTGTTACATTAAGAT
ACTTGTATCAGTTGTAAAGGggaacaaaaatcataaattgaCATTCTGGC
TGATTACGACATCTTGTGTCTATAACTACATGGTGTTTTCTTGAAATGTC
AAACATTTTTGGCTCGTCTTCAAATCCAAGTTCAGGTGTTTAGTCGAGGC
TTCCTTTAATGCTGCATTCTTTAGTAATCTGATGcctattttagaaaatc
aacTGATAGTCTTGGTccctataaaaatgaaaaatttaaagctTATAATT
TTTCCTTAGGGTCTTGCTGATGCGTTCATTCTCATGAGATATCCTTTCGA
ATCAGAAGAAGCCGCAGATCTGAACAGAAAAGTCTTTGAAACAATATATT
ACGGTGCATTGGAATCCTCATGTGAATTGGCTGAGCGTGACGGCACTTAT
AAAACTTATCCTGGTTGTCCAGTTAGCCAAGGAATTTTGCAATACGACAT
GTGGAATGTTACCCCTTCCAATATGTGGGATTGGGCAGCACTCAAAGAAA
AGATTGCTAAGTAAGTCTTTTTCAAAGTTCCACTTCCAGTAGACCTATTC
ATTTAACCATTTacaatgttttcaaaattttccatcctTAATCCGTGAAA
GTTTGTAGACGAATTCTTATTCTCATGTCTTTTACTTTTTAGACACGGCA
TCAGAAACAGTCTTCTGTTAGCTCCAATGCCTACAGCATCAACAGCTCAA
ATTCTTGGCAATAACGAATCGTTTGAaccattcaccagtaacatctaTTC
AAGACGTGTTTTATCTGGCGAATTTCAAGTGGTCAATAAACATTTGGTTA
AAGATCTTACTGAATTAGATTTGTGGAATGATGATATGAAAAACACCTTG
GTAGCTCATAACGGATCTGTACAGGTAAAAATAGTTTTAGCAAATAATGC
TCATTGATATCCAAAATTTCGTTTTCAACGAAAAGACTTTTAGAAAAATA
CTCCGCTTATAACTTCAAACCACATCAGACGAGCATTAagaaaatttgtt
aatttttttaatctttcatTTAGAATATTGACGAAATTCCGAGCGAGATC
AAAGCATTGTACAAGACAGCCTgggaaatgaagatgaagacaATGATCAA
CATGGCTGCTGATCGAGCTGCTTTCATTGACCAATCTCAGTCATTCAATA
TCTTTGTTGGAGTACCAAACTTTGCTAAATTGACCGCCATTCACTTTTAC
GGATGGAAAAAGGTAATTTTAACATTAAATTTTCTTTGCAATCACACATA
GCTCTTGCACTAAGTGAGGTATTTTAAATTGGTATTAATTATGATGATTC
TTTGTTTGTCTTTTTATTTGCTTGCTACACTATTTCGTCAAAAATTTATG
CGTAATTGCGGGTCTACTGCTTTGGTGTTTTTTACTTTGTGTAGTCAAAA
CTATTGTATTTACCTTTATTTTCCAGGGATTGAAGACTGGTATGTACTAC
TTGCGAACGAAGCCAGCTGCAAACGCTATTCAATTCACTGTTGACCAAAC
CAAACTGAAAAATCGCGAAAAGAACGAAGCTGACATTATGTGCTCTATCG
ATAACAAAGAAGCCTGCATTTCTTGCTCAGGTTAACAAGTGAGACTTTAG
ATATTGTTTAAGTGTGGTATCTATTGAATCTGCGCCGTAGATGTGAATAC
TGTGTGTGCAGTTACCCTCCGGGAAGGGAAATTTCAAAGGACTCAATAAA
AAGATGTGtatatatttctaaaatttgtataaaaataatctACTTATATT
TAGTATTCGGTTacgtttaacttttatttacttAGCATAACATGTAAAGA
AATaacaaaagacaaaaaattttaaatttgcaaaatattttgttttgcaa
ATTCATTTTCTAGataattttgatcatttttattAATGAACTTGTAAAAC
TATATAAACCTTCAtagaaaaactacaaaaatataATACAGATCAAAAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011766	XLOC_011766	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000376	supercontig	sc0000376:70454..78803 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.41588	8.33478	0.204644	1.11671	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17.4954	24.3785	0	0	0	0

Blast

[Close]

BLAST of TCONS_00020979 vs. Swiss-Prot (Human)
Match: RIR1 (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0
Identity = 566/807 (70.14%), Postives = 675/807 (83.64%), Query Frame = 2

Query:  305 MFVLKRDGRQEECHFDKITSRIKKLCFGDINMKYVSPYAVTLKVIQGMYSGITTVELDTLAAEISASMTTKHVDYGKLAARIAISNLHKETKKKFSDTIHDLYTYVNPEIKKPCPMISKETYEIVQENKEKLDGAIISGRDFEYNYFGFKTLERSYLLRINGKPAERPQHMLMRVSVGIHGKDIEAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMRDDSIEGIFDTLKQCAVISKWAGGIGLHTHCIRASGSYIAGTNGHSNGLVPMLRVYNNAARYVDQGGNKRPGSIAVYLEPWHADILEFLDLKKNTGKEEQRARDLFFALWMCDLFMKRVETKGTWSLMCPHECPGLSDSXXXXXXXXXXXXXXXXXXRRQIPAQKLWYAILESQVETGTPYILYKDSCNKKSNQKNLGVIKCSNLCTEIVEYTAPDEIAVCNLASIAVNKFVTENREEVQMPNGEIKIKKSGTFDFNKLKEVAKTVTKNLNKVIDRNFYPCEEARNSNMRHRPIGIGIQGLADAFILMRYPFESEEAADLNRKVFETIYYGALESSCELAERDGTYKTYPGCPVSQGILQYDMWNVTPSNMWDWAALKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPFTSNIYSRRVLSGEFQVVNKHLVKDLTELDLWNDDMKNTLVAHNGSVQNIDEIPSEIKALYKTAWEMKMKTMINMAADRAAFIDQSQSFNIFVGVPNFAKLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTVDQTKL----------KNREKNEADIMCSIDNKEACISC 2695
            M V+KRDGRQE   FDKITSRI+KLC+G +NM +V P  +T+KVIQG+YSG+TTVELDTLAAE +A++TTKH DY  LAARIA+SNLHKETKK FSD + DLY Y+NP   K  PM++K T +IV  NK++L+ AII  RDF YNYFGFKTLERSYLL+INGK AERPQHMLMRVSVGIH +DI+AAIETYNL+SE+WFTHASPTLFN+GT RPQ+SSCFLL+M+DDSIEGI+DTLKQCA+ISK AGGIG+   CIRA+GSYIAGTNG+SNGLVPMLRVYNN ARYVDQGGNKRPG+ A+YLEPWH DI EFLDLKKNTGKEEQRARDLFFALW+ DLFMKRVET   WSLMCP+ECPGL + +GEEFEKLY  YEK+G+ R+ + AQ+LWYAI+ESQ ETGTPY+LYKDSCN+KSNQ+NLG IKCSNLCTEIVEYT+ DE+AVCNLAS+A+N +VT                   T+DF KL EV K V +NLNK+ID N+YP  EA  SN RHRPIGIG+QGLADAFILMRYPFES EA  LN+++FETIYYGALE+SC+LA+  G Y+TY G PVS+GILQYDMWNVTP+++WDW  LKEKIAK+GIRNSLL+APMPTASTAQILGNNES EP+TSNIY+RRVLSGEFQ+VN HL+KDLTE  LW+++MKN ++A NGS+Q+I EIP ++K LYKT WE+  KT++ MAA+R AFIDQSQS NI +  PN+ KLT++HFYGWK+GLKTGMYYLRT+PAAN IQFT+++ KL          + +E+N A ++CS++N++ C+ C
Sbjct:    1 MHVIKRDGRQERVMFDKITSRIQKLCYG-LNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH----------------TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790

The following BLAST results are available for this feature:

BLAST of TCONS_00020979 vs. Swiss-Prot (Human)

BLAST of TCONS_00020979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIR1	0.000e+0	70.14	Ribonucleoside-diphosphate reductase large subunit...	[more]

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TCONS_00020979 (transcript) - C. hemisphaerica