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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020972 ID=TCONS_00020972|Name=TCONS_00020972|organism=Clytia hemisphaerica|type=transcript|length=1135bp
CGGTTGTTACTCTGTtcaacatatttttcttttccgttGTATGTTTCGCT
TATTCCTCGGCTATTCGCGGTTTTCTGTTCTGTCCGTTCTCCATGTCGAC
CGGTTTTTTTCTTTACGATTTTCATCTTCCGTCCGAATGTTTTCCGTTCA
GTCATCTTACGTTCATACTGGATTTTCTCAttgatcatttttgatttctt
ggCTTTATTTTCGTTACGAGCTATTTCTTCTTCCAGTTTTCGTTTCTTTT
GATTCTCGGTCGCTTCTTGACGAAGTGAGGAAACCATGTCACAAATGTCT
TGAGGAATTTCATCAGAAGAAGCTGATGAACCAGTGTCATTTGATGAGTC
AGAATAAACGGCAAGTTCAGTCTCATAGATCTTCACACATGGAACAATTG
TTTCTTTTGTGGAAGAAAGTTCACGCTCATAAATTTTCGCCGTTGGTGCA
TTTGATTGTTCACCTCTAGTAACCTCTTTTTCACCACTAGTAAGCTCTTT
TTTACCACTAGTAGCCTCTTTTTTACCACTAGCAACCTCTTTTTCACCAC
TAGCAACTTTTCGTTGGGAACATTTGGAGTCGTCAAACACCAACATTTCA
CCGAAAGCAAACGACAAACGATCAATATCAGGCGAAGGTTTCTCGTACAC
CGAATCTTGATTGTCGTTCATTGTACCCAGAAACTCGAGGAAATGTTTGG
GATCATGGTTAGGCTGATATCCAGTCATCTTTGATTCCAATTTAGTCTCC
AACGAGGAAGTTTcctgaaatttgtttttgttctttcgatgtttttttaa
ttttaaggtcGTTGAGATACGGGTGATATCTGTTTACGGTGTGTTTCTTC
ACTGAGAAGAAATCTTGCGACTTCGGTTTCGTAGAGTTCCTCAGGTCGTT
TCGAACAAGAGATGGGACGTTAGAATGGCGATACATACGATATTGGATCA
TTtctttcatcaaaatattcGGAAACAGTTTTCCGAACTCGACTGTTCCA
TTCATATTTTCACTGATCATCGCAAAATCAGCTGATCCGGAACTCATCAA
GATATGAAGATTTTCCattttgaaaaccaatttttgaaattccagcATTG
ACTGTAGATAACATTCTGTTATCATTGGTTTACTA Run BLAST on NCBI protein sequence of TCONS_00020972-protein >TCONS_00020972-protein ID=TCONS_00020972-protein|Name=TCONS_00020972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MTGYQPNHDPKHFLEFLGTMNDNQDSVYEKPSPDIDRLSFAFGEMLVFDD
SKCSQRKVASGEKEVASGKKEATSGKKELTSGEKEVTRGEQSNAPTAKIY
ERELSSTKETIVPCVKIYETELAVYSDSSNDTGSSASSDEIPQDICDMVS
SLRQEATENQKKRKLEEEIARNENKAKKSKMINEKIQYERKMTERKTFGR
KMKIVKKKTGRHGERTEQKTANSRGISETYNGKEKYVEQSNN Run BLAST on NCBI transcript from alignment at sc0000374:283187..284321 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020972 ID=TCONS_00020972|Name=TCONS_00020972|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at sc0000374:283187..284321 (Clytia hemisphaerica)
TAGTAAACCAATGATAACAGAATGTTATCTACAGTCAATgctggaatttc
aaaaattggttttcaaaatGGAAAATCTTCATATCTTGATGAGTTCCGGA
TCAGCTGATTTTGCGATGATCAGTGAAAATATGAATGGAACAGTCGAGTT
CGGAAAACTGTTTCCgaatattttgatgaaagaAATGATCCAATATCGTA
TGTATCGCCATTCTAACGTCCCATCTCTTGTTCGAAACGACCTGAGGAAC
TCTACGAAACCGAAGTCGCAAGATTTCTTCTCAGTGAAGAAACACACCGT
AAACAGATATCACCCGTATCTCAACgaccttaaaattaaaaaaacatcga
aagaacaaaaacaaatttcaggAAACTTCCTCGTTGGAGACTAAATTGGA
ATCAAAGATGACTGGATATCAGCCTAACCATGATCCCAAACATTTCCTCG
AGTTTCTGGGTACAATGAACGACAATCAAGATTCGGTGTACGAGAAACCT
TCGCCTGATATTGATCGTTTGTCGTTTGCTTTCGGTGAAATGTTGGTGTT
TGACGACTCCAAATGTTCCCAACGAAAAGTTGCTAGTGGTGAAAAAGAGG
TTGCTAGTGGTAAAAAAGAGGCTACTAGTGGTAAAAAAGAGCTTACTAGT
GGTGAAAAAGAGGTTACTAGAGGTGAACAATCAAATGCACCAACGGCGAA
AATTTATGAGCGTGAACTTTCTTCCACAAAAGAAACAATTGTTCCATGTG
TGAAGATCTATGAGACTGAACTTGCCGTTTATTCTGACTCATCAAATGAC
ACTGGTTCATCAGCTTCTTCTGATGAAATTCCTCAAGACATTTGTGACAT
GGTTTCCTCACTTCGTCAAGAAGCGACCGAGAATCAAAAGAAACGAAAAC
TGGAAGAAGAAATAGCTCGTAACGAAAATAAAGccaagaaatcaaaaatg
atcaaTGAGAAAATCCAGTATGAACGTAAGATGACTGAACGGAAAACATT
CGGACGGAAGATGAAAATCGTAAAGAAAAAAACCGGTCGACATGGAGAAC
GGACAGAACAGAAAACCGCGAATAGCCGAGGAATAAGCGAAACATACaac
ggaaaagaaaaatatgttgaACAGAGTAACAACCG Coding sequence (CDS) from alignment at sc0000374:283187..284321 >TCONS_00020972 ID=TCONS_00020972|Name=TCONS_00020972|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000374:283187..284321 (Clytia hemisphaerica)
ATGACTGGATATCAGCCTAACCATGATCCCAAACATTTCCTCGAGTTTCT
GGGTACAATGAACGACAATCAAGATTCGGTGTACGAGAAACCTTCGCCTG
ATATTGATCGTTTGTCGTTTGCTTTCGGTGAAATGTTGGTGTTTGACGAC
TCCAAATGTTCCCAACGAAAAGTTGCTAGTGGTGAAAAAGAGGTTGCTAG
TGGTAAAAAAGAGGCTACTAGTGGTAAAAAAGAGCTTACTAGTGGTGAAA
AAGAGGTTACTAGAGGTGAACAATCAAATGCACCAACGGCGAAAATTTAT
GAGCGTGAACTTTCTTCCACAAAAGAAACAATTGTTCCATGTGTGAAGAT
CTATGAGACTGAACTTGCCGTTTATTCTGACTCATCAAATGACACTGGTT
CATCAGCTTCTTCTGATGAAATTCCTCAAGACATTTGTGACATGGTTTCC
TCACTTCGTCAAGAAGCGACCGAGAATCAAAAGAAACGAAAACTGGAAGA
AGAAATAGCTCGTAACGAAAATAAAGccaagaaatcaaaaatgatcaaTG
AGAAAATCCAGTATGAACGTAAGATGACTGAACGGAAAACATTCGGACGG
AAGATGAAAATCGTAAAGAAAAAAACCGGTCGACATGGAGAACGGACAGA
ACAGAAAACCGCGAATAGCCGAGGAATAAGCGAAACATACaacggaaaag
aaaaatatgttgaACAGAGTAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020972-exon-sc0000374-1491911889:283187..284321 | TCONS_00020972-exon-sc0000374-1491911889:283187..284321 | Clytia hemisphaerica | exon |
| TCONS_00020972-exon-sc0000374-1510915933:283187..284321 | TCONS_00020972-exon-sc0000374-1510915933:283187..284321 | Clytia hemisphaerica | exon |
| TCONS_00020972-exon-sc0000374-1575043694:283187..284321 | TCONS_00020972-exon-sc0000374-1575043694:283187..284321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:283187..284321 . |
Blast
The following BLAST results are available for this feature:
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