TCONS_00020963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020963
Unique NameTCONS_00020963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020963 ID=TCONS_00020963|Name=TCONS_00020963|organism=Clytia hemisphaerica|type=transcript|length=568bp
AGGTAATCCATACCCTGCACCCATCCGTAACAAATAGAACTCTGCGTTAT
CTTTCCTgtgaagaagagtttggtacaggttAGTTGTTTACGTCTTTGCT
AGGCGTCATGAACGGAAAAATACTATATTCtcattttttctcctttttat
agTTATTGTATTCATCGCTGCTTCGGTCCACCTTGTCATCCACGCTGTTC
TTGTGAACGCAACTTGCAAGAGTAGCTTTGATTTGGTGAATGGCTATTGC
GTCAAACTGTTaggattaaaaaattttaataatgcAAGGAAAGCCTGTTA
TAAGATGACGCCAAGTGCTGCAGTCCCCCATTGGGCGGGAGATGATGCAA
GCCTCTTCAGCGCCATCGAACAGTTGGGCGGAGACTACAATAATATGAAG
GTTTGGACCAGCGGTGTTTTTATAGGGACAAAATATATGTGGGGAGTTAA
TTATGAGACTCCAGTCACCGACACGAGGAATTGGAAAACGTCCGCCGCCC
CTGGAAAGTGTCTTAAGTACAAAGTGAACAAAAAGGACAAAAACAATGGC
TATGCTTTGGCAGATTGT
Run BLAST on NCBI

transcript from alignment at sc0000374:278577..280150-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020963 ID=TCONS_00020963|Name=TCONS_00020963|organism=Clytia hemisphaerica|type=transcript|length=1574bp|location=Sequence derived from alignment at sc0000374:278577..280150- (Clytia hemisphaerica)
AGGTAATCCATACCCTGCACCCATCCGTAACAAATAGAACTCTGCGTTAT
CTTTCCTGTGAAGAAGAGTTTGGTACAGGTTAGTTGTTTACGTCTTTGCT
AGGCGTCATGAACGGAAAAATACTATATTCTCATTTTTTCTCCTTTTTAT
AGTTATTGTATTCATCGCTGCTTCGGTCCACCTTGTCATCCACGCTGTTC
TTGTGAACGCAAGTAAGTTTCCTCGAGGAATTCCTAAGAGATTTCTATTG
TAATACTCCTGAAACAATCCCAAAATGCATCGCTTTTTTAGAAAAATCAA
AAACTCCGATAAGATCTATTACATGGTTCCATGATCATTTTTAGGGCAAT
TTCATCATGTTATTCTTGTTAGTCAGGCACGTGCTACTTTATCATTTAAT
TACCCCCTAAACTCGATTCAATCCTTTTTTACACCTTTTTCTATTGTCTA
TAGGTGCAAAGAAAAGTCTGCGACGTTTTTAGGGTGGTAAAACGGACAAA
AAAATACCCGCACGGCAATTGGCGGCTACGGTCGAAAAGTTGTATTATAC
AACGTTCTATACGCTATTCCTTTCATTTATAGCTTGCAAGAGTAGCTTTG
ATTTGGTGAATGGCTATTGCGTCAAACTGTTAGGATTAAAAAATTTTAAT
AATGCAAGGAAAGCCTGTTATAAGATGACGCCAAGTGCTGCAGTCCCCCA
TTGGGCGGGAGATGATGCAAGCCTCTTCAGCGCCATCGAACAGTTGGGCG
GAGACTACAATAATATGAAGGTTTGGACCAGCGGTGTTTTTATAGGGACA
AAATATATGTGGGGAGTTAATTGTAAGTATTTCTACATTTTGTACTTTTA
CTTTTTGTTTTGTTTTATGTTTTGTTAACTTCCGCCATTATGAAAAGGAA
CGCTTGTAAGAGGAAACACCTATGCAGATTCGAACGTTTGCTTCCTTCCT
AAATTTTATTCCATATTATCCATAATAACTACGTAACTGAAAGGTTTTTG
TTTTAATAGGAGTGATATCATTTGCTTACTCATCAATTTTACTTTACAAG
CTTTTTCTTATTGGATTGACACAAATGTGGAGCAAGAGGGAAAGAAAAAC
ATTTTTTTGTTTATTCATAGCAATTGATTAAAAATAGTACTATTCAGAAT
TTGTTTCTACTGGTAGAAGTAGTCTAACATAGGACATTTTTAAGTAGCTT
GCTACGCTCCACTGCAGAGACATTCAGCGTTTTGCGTAAAAATGTCTCAG
ACACGGAATGTTGCCTAACCGTAACAGACCAAACTTTTCTTTTCAGTCAG
CGAAAAAGAGTATGCTACAGGCTAACTGTTACCATGGTGTAAAGTGTAAA
GTGTTACAGCAAAGCGATTATATTACGTTCAATTAAAAAGTGTTGCCTAT
TGCTCTTAGTGTGATATAAATTACCTATAGATAAACATATTCTGTTTGGT
CTTTTTAGATGAGACTCCAGTCACCGACACGAGGAATTGGAAAACGTCCG
CCGCCCCTGGAAAGTGTCTTAAGTACAAAGTGAACAAAAAGGACAAAAAC
AATGGCTATGCTTTGGCAGATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011753XLOC_011753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020963-exon-sc0000374-1575043694:279939..280150TCONS_00020963-exon-sc0000374-1575043694:279939..280150Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1575043694:279329..279568TCONS_00020963-exon-sc0000374-1575043694:279329..279568Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1575043694:278577..278692TCONS_00020963-exon-sc0000374-1575043694:278577..278692Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1510915933:279939..280150TCONS_00020963-exon-sc0000374-1510915933:279939..280150Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1510915933:279329..279568TCONS_00020963-exon-sc0000374-1510915933:279329..279568Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1510915933:278577..278692TCONS_00020963-exon-sc0000374-1510915933:278577..278692Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1491911889:279939..280150TCONS_00020963-exon-sc0000374-1491911889:279939..280150Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1491911889:279329..279568TCONS_00020963-exon-sc0000374-1491911889:279329..279568Clytia hemisphaericaexon
TCONS_00020963-exon-sc0000374-1491911889:278577..278692TCONS_00020963-exon-sc0000374-1491911889:278577..278692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:278577..280150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.223787	0	0	0.105311	0	0	0.0832769	0.103152	0.200243	0.132421	0.814057	0.558736	0.392808	0.301102	0.0741866	0.0760389	1.28295	0.549646	0.191097	0	0	0.213457	0.424411	0.195167	0	0	0.109687	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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