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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020953 ID=TCONS_00020953|Name=TCONS_00020953|organism=Clytia hemisphaerica|type=transcript|length=1945bp
AAATTCTTTTCTAGATCATGTTCAAAATGTAtcgagattttagtgtattt
taacgtttttcagaatttaaagttcgggcgagaattgctattttagcact
tctaccttcttcattgaatatttcgattttgtagtttaacgcgctaaaaa
atcgtttttgtctcaaatattctGTCCATGTTTGTAGTGGATTAGGTAGG
CATTGCTGTTTAGGCTTACCGCTTCTAAATGTTGCAACTTTTTCACATAA
TTTTACAatgattttgtcaatattttttgtatttatacTTAAGAATTTTT
AAGAAATCTAAACCGTACAATagctaaaaaataaattttaattacAAAAC
CTAAATGGACTCGTAAAAATGAATTGTCTGGCCATGACTGCATGGAAATT
TAATAGAAACATTTTTCATAATACGAAAAACTCgttaagctttcaaagca
tccaTGCATTATCCATTTATTATATTCTTATGAATTATAATTTACCCGAA
AAATCTAAGAAATTCTATAAACATTCGTCTCGATAAGCGTTTAGACTTCA
GTGGGTGGCTAGTCGTGAAATATCTTTTATTTAACCACTCCCAAACATTT
GTAATCGACAGTCATGAGTGTACAAGTCTATCAGTTAAATAAGTGATGCA
GATAAGATGCAAATAAGTATGTTGGTTGGTGAAACTCATCATTCAATTTT
TTGTCCAGCATTGAAATTACTCAAAATAGGGTACAATAATTCGTAAAGTG
ATTTTCCCCTCTGAaacagtacacgcttttttataagaatagtttgGCTG
GGGGTGAGCAGTATTCTTATTAGGTCTATTGTCCTAACTCCGAAATCTCA
cgctgatattcttatagaagttatccTTATAAAATAAAGCGTGTACAGTa
gcatcaaaataaaattctatTAACAAGCGTTGCTAGATATCTACAGCAAA
TAAACAACTCTTgtgtcttataaaaaacaatgatgaccatctttctaaaa
aatatataaaaataaaagagttGTAGACAACACAATCAAAACACCATTTA
TAACGCTTTATCGCTAATACTTCTGACTTCCCTTTGACATGATACACTTT
TACGACCGTAGTCGCCAATTGCCGCACGGGCATTTTTATGTCCGTTTTAC
CATCCTAAAACCGTCTCAGTCATTATTTCTATTGCACGGACAAAAAattg
cccgcgcggcaattgtcggctacggtcgaaaaggtgtatagtaAAAAACT
AAGCCTCCATGTTTGCACGTTTTGTTTTGTATTATTCCAAAAGCAGATGA
TACTTCTTCCTATTGGTTTcatttttggttttcaaacttTCCCAATCAAT
GAAATAACTTATCCGTGGAACCGTGAAGAATAATTTAACGGTTGAATGAA
ATCATGAGTAATCAGGACACCCACGCATTAAAAGCGAATTTCTGTTGTAC
TAAAAATGTTTGGAAGTGTTTTGTGTCCAGTTAACGGGACGGAAGACGTG
ATGGGATTCCTGATTATCCATGATTCACTTCATTTCGACCTTGAAATGGC
CCGTTTTACCAAGCTATCTATCTTTGTCACATTGCAATTGCGCAAGGTCA
ATCTCAACCATTTATCAATGAGCTTCTAAATATTGTTTAATAGAAACCAA
AGTATCATTGTTCAGTGTACacaaatcgaaatcgaaagttgATGACGTAA
TCATGTAATCCCCCGTCGCTTCGACAATATCCACAATGCCTTGCAAGATA
TTAGAGTCTTGTGATTCGGAGATCTTGCTGAACATTTCGTTCAGTTCTGG
CTGGGTGAGGGTAGGATCCGGCATCTTTTTACCTGTTTCCGAAGTCGTTC
TAAAAAGTGCAAAAAGACGAAATAGCGTTTAAGTAAGGAGAGTCCAGAAG
ATCTTGGGAGAGAACTAAGTATTGTACTTTCGGTCCTCTTTTTCT Run BLAST on NCBI transcript from alignment at sc0000374:183465..185490- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020953 ID=TCONS_00020953|Name=TCONS_00020953|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at sc0000374:183465..185490- (Clytia hemisphaerica)
AAATTCTTTTCTAGATCATGTTCAAAATGTATCGAGATTTTAGTGTATTT
TAACGTTTTTCAGAATTTAAAGTTCGGGCGAGAATTGCTATTTTAGCACT
TCTACCTTCTTCATTGAATATTTCGATTTTGTAGTTTAACGCGCTAAAAA
ATCGTTTTTGTCTCAAATATTCTGTCCATGTTTGTAGTGGATTAGGTAGG
CATTGCTGTTTAGGCTTACCGCTTCTAAATGTTGCAACTTTTTCACATAA
TTTTACAATGATTTTGTCAATATTTTTTGTATTTATACTTAAGAATTTTT
AAGAAATCTAAACCGTACAATAGCTAAAAAATAAATTTTAATTACAAAAC
CTAAATGGACTCGTAAAAATGAATTGTCTGGCCATGACTGCATGGAAATT
TAATAGAAACATTTTTCATAATACGAAAAACTCGTTAAGCTTTCAAAGCA
TCCATGCATTATCCATTTATTATATTCTTATGAATTATAATTTACCCGAA
AAATCTAAGAAATTCTATAAACATTCGTCTCGATAAGCGTTTAGACTTCA
GTGGGTGGCTAGTCGTGAAATATCTTTTATTTAACCACTCCCAAACATTT
GTAATCGACAGTCATGAGTGTACAAGTCTATCAGTTAAATAAGTGATGCA
GATAAGATGCAAATAAGTATGTTGGTTGGTGAAACTCATCATTCAATTTT
TTGTCCAGCATTGAAATTACTCAAAATAGGGTACAATAATTCGTAAAGTG
ATTTTCCCCTCTGAAACAGTACACGCTTTTTTATAAGAATAGTTTGGCTG
GGGGTGAGCAGTATTCTTATTAGGTCTATTGTCCTAACTCCGAAATCTCA
CGCTGATATTCTTATAGAAGTTATCCTTATAAAATAAAGCGTGTACAGTA
GCATCAAAATAAAATTCTATTAACAAGCGTTGCTAGATATCTACAGCAAA
TAAACAACTCTTGTGTCTTATAAAAAACAATGATGACCATCTTTCTAAAA
AATATATAAAAATAAAAGAGTTGTAGACAACACAATCAAAACACCATTTA
TAACGCTTTATCGCTAATACTTCTGACTTCCCTTTGACATGATACACTTT
TACGACCGTAGTCGCCAATTGCCGCACGGGCATTTTTATGTCCGTTTTAC
CATCCTAAAACCGTCTCAGTCATTATTTCTATTGCACGGACAAAAAATTG
CCCGCGCGGCAATTGTCGGCTACGGTCGAAAAGGTGTATAGTAAAAAACT
AAGCCTCCATGTTTGCACGTTTTGTTTTGTATTATTCCAAAAGCAGATGA
TACTTCTTCCTATTGGTTTCATTTTTGGTTTTCAAACTTTCCCAATCAAT
GAAATAACTTATCCGTGGAACCGTGAAGAATAATTTAACGGTTGAATGAA
ATCATGAGTAATCAGGACACCCACGCATTAAAAGCGAATTTCTGTTGTAC
TAAAAATGTTTGGAAGTGTTTTGTGTCCAGTTAACGGGACGGAAGACGTG
ATGGGATTCCTGATTATCCATGATTCACTTCATTTCGACCTTGAAATGGC
CCGTTTTACCAAGCTATCTATCTTTGTCACATTGCAATTGCGCAAGGTCA
ATCTCAACCATTTATCAATGAGCTTCTAAATATTGTTTGATAGAAACCAA
AGTATCGNCACATTGCAATTGCGCAAGGTCAATCTCAACCATTTATCAAT
GAGCTTCTAAATATTGTTTAATAGAAACCAAAGTATCATTGTTCAGTGTA
CACAAATCGAAATCGAAAGTTGATGACGTAATCATGTAATCCCCCGTCGC
TTCGACAATATCCACAATGCCTTGCAAGATATTAGAGTCTTGTGATTCGG
AGATCTTGCTGAACATTTCGTTCAGTTCTGGCTGGGTGAGGGTAGGATCC
GGCATCTTTTTACCTGTTTCCGAAGTCGTTCTAAAAAGTGCAAAAAGACG
AAATAGCGTTTAAGTAAGGAGAGTCCAGAAGATCTTGGGAGAGAACTAAG
TATTGTACTTTCGGTCCTCTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020953-exon-sc0000374-1575043694:183895..185490 | TCONS_00020953-exon-sc0000374-1575043694:183895..185490 | Clytia hemisphaerica | exon |
| TCONS_00020953-exon-sc0000374-1575043694:183465..183813 | TCONS_00020953-exon-sc0000374-1575043694:183465..183813 | Clytia hemisphaerica | exon |
| TCONS_00020953-exon-sc0000374-1510915933:183895..185490 | TCONS_00020953-exon-sc0000374-1510915933:183895..185490 | Clytia hemisphaerica | exon |
| TCONS_00020953-exon-sc0000374-1510915933:183465..183813 | TCONS_00020953-exon-sc0000374-1510915933:183465..183813 | Clytia hemisphaerica | exon |
| TCONS_00020953-exon-sc0000374-1491911889:183895..185490 | TCONS_00020953-exon-sc0000374-1491911889:183895..185490 | Clytia hemisphaerica | exon |
| TCONS_00020953-exon-sc0000374-1491911889:183465..183813 | TCONS_00020953-exon-sc0000374-1491911889:183465..183813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:183465..185490 - |
Blast
The following BLAST results are available for this feature:
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