|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020946 ID=TCONS_00020946|Name=TCONS_00020946|organism=Clytia hemisphaerica|type=transcript|length=863bp
GTACTACCCAAACTAGAGGTACACAAAAATTTGTCAGGATCTGcgacaaa
atttttgattgcCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAG
AAAACCGGCAAAACCTGCTCTCAGACAGTACACAGAAACAAAAGACAAAT
GttttgagtgGCTGACGGATACATTTTTGANACTTGTGTGTTGTGACCAA
AttataactttttatcattttagtgGCTTgcggaatttttgaaaagtggg
aAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGCAAAGAAAAAAGGAG
ACTGTACCTGGCTATTCAAACTGTTGAAAGGCTGCATGCAAACTACAGGA
GCTGCTTGTTGAATATCCTGGATTTTACATTTTGGATCATGGTCGTCTAA
GTCAGCCAACCTCAACTTATGTGGGCAGGTCGTTCTGAtggttttttcta
ttgtttaaattattgttatttaaaaaattgtttttttagatNTTTGGTGT
ATCACATTGCTAGGTTCCGACCGAGATTGAAGAAATAAGTCCTTCGCAAC
GGGATTTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCCAgcaggacaaa
aatgctcactgcgacctgaaaaataaagatatctcTCNAAAATAAAttca
gaaaaagtaaataaacagaaaggataccgtgagattgggtaacttgcatc
agtggaggctaacatgcatagccctcaaatgaaagacctggctggtcatt
aaaatacaaagttaaatcaaaaNcaggacaaaaatgctcactgcgacctg
aaaaataaagatatctctctgaaatttccaggagatgttcagaaagacct
aaggatctcaaaa Run BLAST on NCBI transcript from alignment at sc0000374:254332..255677+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020946 ID=TCONS_00020946|Name=TCONS_00020946|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at sc0000374:254332..255677+ (Clytia hemisphaerica)
GTACTACCCAAACTAGAGGTACACAAAAATTTGTCAGGATCTGcgacaaa
atttttgattgcCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAG
AAAACCGGCAAAACCTGCTCTCAGACAGTACACAGAAACAAAAGACAAAT
GttttgaggtaatttttatccTATATTTTTCGATGGGATTAGTTTTTGTA
GGTATTCTCACTAGNAATTTTTATCCTATATTTTTCAATTGGATTAGTTT
TTGTAGGTATTCTCACTAGCTGCTAGTTGCCTTCAAGGGTTAGGTGTTAC
TATATCCAGATAATTCTACTCCATACAATATGTGAATTGAAATAAGATAC
ATCTTATGATTTTAAAGgagcatttttttttattagagatAATGTTGACA
TGACGGTTCACTTGTGTGTTGTGACCAAAttataactttttatcatttta
gtgGCTGACGGATACATTTTTGANACTTGTGTGTTGTGACCAAAttataa
ctttttatcattttagtgGCTTgcggaatttttgaaaagtgggaAAACAG
AGGCACCTACACCTGGCTTGCAAAGGAGCAAAGAAAAAAGGAGACTGTAC
CTGGCTATTCAAACTGTTGAAAGGCTGCATGCAAACTACAGGTTTGTAAT
GATTTTGCACTCAAAGGTTTTTTAGTATGAAATAGTACAGTGTTAATTTT
AAGCAATCAATGTTTCTGCGAGTGCTCCTGGCCTTGCATGTTTTAgaggt
gtttttttttcaatatagaAAACCGACCTTTTCTCAGTCTTTATTCTTTC
AATCAGacctttttcacttttcatcttgCAGGAGCTGCTTGTTGAATATC
CTGGATTTTACATTTTGGATCATGGTCGTCTAAGTCAGCCAACCTCAACT
TATGTGGGCAGGTCGTTCTGAtggttttttctattgtttaaattattgtt
atttaaaaaattgtttttttagatNTTTGGTGTATCACATTGCTAGGTTC
CGACCGAGATTGAAGAAATAAGTCCTTCGCAACGGGATTTTTTCCGTTGC
TAGGGCGATTTTTCAAGCACCCAgcaggacaaaaatgctcactgcgacct
gaaaaataaagatatctcTCNAAAATAAAttcagaaaaagtaaataaaca
gaaaggataccgtgagattgggtaacttgcatcagtggaggctaacatgc
atagccctcaaatgaaagacctggctggtcattaaaatacaaagttaaat
caaaaNcaggacaaaaatgctcactgcgacctgaaaaataaagatatctc
tctgaaatttccaggagatgttcagaaagacctaaggatctcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020946-exon-sc0000374-1491911889:254332..254489 | TCONS_00020946-exon-sc0000374-1491911889:254332..254489 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1510915933:254332..254489 | TCONS_00020946-exon-sc0000374-1510915933:254332..254489 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1575043694:254332..254489 | TCONS_00020946-exon-sc0000374-1575043694:254332..254489 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1491911889:254783..254972 | TCONS_00020946-exon-sc0000374-1491911889:254783..254972 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1510915933:254783..254972 | TCONS_00020946-exon-sc0000374-1510915933:254783..254972 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1575043694:254783..254972 | TCONS_00020946-exon-sc0000374-1575043694:254783..254972 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1491911889:255163..255677 | TCONS_00020946-exon-sc0000374-1491911889:255163..255677 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1510915933:255163..255677 | TCONS_00020946-exon-sc0000374-1510915933:255163..255677 | Clytia hemisphaerica | exon |
| TCONS_00020946-exon-sc0000374-1575043694:255163..255677 | TCONS_00020946-exon-sc0000374-1575043694:255163..255677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:254332..255677 + |
Blast
The following BLAST results are available for this feature:
|
