TCONS_00020945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020945
Unique NameTCONS_00020945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020945 ID=TCONS_00020945|Name=TCONS_00020945|organism=Clytia hemisphaerica|type=transcript|length=1023bp
TGGAAAGGCAATGTGATGAGGAAGGCCAACAAGCGAGACAATCAGCCTCG
CATGTTTTAGCTTTCATTGTACGAGcTGGACAAACACTCAATCAGTTGGA
ACCATGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTT
TATACATGATCAAATTAACAAGAGAACACATCGACTAAATATGATGAATG
TTTAAACTTGCAGCTCAGtgtaTCAGTACTACCCAAACTAGAGGTACACA
AAAATTTGTCAGGATCTGcgacaaaatttttgattgcCTAAATGGACAGT
ATCCTAACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGA
CAGTACACAGAAACAAAAGACAAATGttttgagtgGCTTgcggaattttt
gaaaagtgggaAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGCAAAG
AAAAAAGGAGACTGTACCTGGCTATTCAAACTGTTGAAAGGCTGCATGCA
AACTACAGGAGCTGCTTGTTGAATATCCTGGATTTTACATTTTGGATCAT
GGTCGTCTAAGTCAGCCAACCTCAACTTATGTGGGCAGGTCGTTCTGAtg
gttttttctattgtttaaattattgttatttaaaaaattgtttttttaga
tNTTTGGTGTATCACATTGCTAGGTTCCGACCGAGATTGAAGAAATAAGT
CCTTCGCAACGGGATTTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCCA
gcaggacaaaaatgctcactgcgacctgaaaaataaagatatctcTCNAA
AATAAAttcagaaaaagtaaataaacagaaaggataccgtgagattgggt
aacttgcatcagtggaggctaacatgcatagccctcaaatgaaagacctg
gctggtcattaaaatacaaagttaaatcaaaaNcaggacaaaaatgctca
ctgcgacctgaaaaataaagatatctctctgaaatttccaggagatgttc
agaaagacctaaggatctcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00020945-protein

>TCONS_00020945-protein ID=TCONS_00020945-protein|Name=TCONS_00020945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MFKLAAQCISTTQTRGTQKFVRICDKIFDCLNGQYPNQDMATRKPAKPAL
RQYTETKDKCFEWLAEFLKSGKTEAPTPGLQRSKEKRRLYLAIQTVERLH
ANYRSCLLNILDFTFWIMVV
Run BLAST on NCBI

transcript from alignment at sc0000374:253254..255677+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020945 ID=TCONS_00020945|Name=TCONS_00020945|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at sc0000374:253254..255677+ (Clytia hemisphaerica)
TGGAAAGGCAATGTGATGAGGAAGGCCAACAAGCGAGACAATCAGCCTCG
CATGTTTTAGCTTTCATTGTACGAGGTATCTACTGgattacttttgtttt
tgttttttccctaCTGCCATCTGCTTCAAGTGATGAGTTATTTCCTGTTG
TCTGGGAGCTGTTGAAGTGTTGgaatatttgagtttgaaagtCAGGTGTT
TGGTATCTGATGGAGCTTCTACAAACCGTTCATTTTATAAACTCAAAGAA
TAAGGAAGATACTGTAATTTCTTCAGCATTAATCTATGTGCCTGATGTGC
CTTAGATAGAAATAAGCTCTACATACTTCATTTGTGAGgacaaaacaatt
ttgaaaactctCATGTAAATAGAAGCACCAAAAATTTTGTAAGCCAATGG
TTTGTCTATTATTTCCAGAGGAAATACCTTAAATAATATCAATGATgatt
tgtttgaaatatttatcaCTACCAGgtgttgaaattaaaaaaaaatgatt
gaaattatATGGTctaatttctttccttttagcTGGACAAACACTCAATC
AGTTGGAACCATGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCC
AGGGCTTTATACATGATCAAATTAACAAGAGAACACATCGACTAAATATG
ATGAATGTTTAAACTTGCAGCTCAGGTAACTTAGATGATTACCATATTAA
CTCAAAAAAGTGCCTATATGTTATCTAATCAGGCTAGGTAAAGTCTGAGA
ATTAGGTTTGTCTGAAATAAAATGGCCTTTTTATGACAATAAAAATCCCA
TGATATGTATTCAGGTATTCAGTTGTCAATGACATTGAAATGACTATAGC
TACAAGTTGACAAGTCTGGTCTCgataattttagtttgatgactAGCTTG
ATATAAacagaaattttgaataatttttctggGCTCAACATCAAAACTTC
TTCAGTGGCTTTTTCAGCTGTGAAACACAAATATTGAATGTTTGGATGGT
GACAAAGACTCTagcttattttcattatttgtcCTGGATTCCTTTTGAAA
GttacttcatttttattttagtgtaTCAGTACTACCCAAACTAGAGGTAC
ACAAAAATTTGTCAGGATCTGcgacaaaatttttgattgcCTAAATGGAC
AGTATCCTAACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTC
AGACAGTACACAGAAACAAAAGACAAATGttttgaggtaatttttatccT
ATATTTTTCGATGGGATTAGTTTTTGTAGGTATTCTCACTAGNAATTTTT
ATCCTATATTTTTCAATTGGATTAGTTTTTGTAGGTATTCTCACTAGCTG
CTAGTTGCCTTCAAGGGTTAGGTGTTACTATATCCAGATAATTCTACTCC
ATACAATATGTGAATTGAAATAAGATACATCTTATGATTTTAAAGgagca
tttttttttattagagatAATGTTGACATGACGGTTCACTTGTGTGTTGT
GACCAAAttataactttttatcattttagtgGCTGACGGATACATTTTTG
ANACTTGTGTGTTGTGACCAAAttataactttttatcattttagtgGCTT
gcggaatttttgaaaagtgggaAAACAGAGGCACCTACACCTGGCTTGCA
AAGGAGCAAAGAAAAAAGGAGACTGTACCTGGCTATTCAAACTGTTGAAA
GGCTGCATGCAAACTACAGGTTTGTAATGATTTTGCACTCAAAGGTTTTT
TAGTATGAAATAGTACAGTGTTAATTTTAAGCAATCAATGTTTCTGCGAG
TGCTCCTGGCCTTGCATGTTTTAgaggtgtttttttttcaatatagaAAA
CCGACCTTTTCTCAGTCTTTATTCTTTCAATCAGacctttttcacttttc
atcttgCAGGAGCTGCTTGTTGAATATCCTGGATTTTACATTTTGGATCA
TGGTCGTCTAAGTCAGCCAACCTCAACTTATGTGGGCAGGTCGTTCTGAt
ggttttttctattgtttaaattattgttatttaaaaaattgtttttttag
atNTTTGGTGTATCACATTGCTAGGTTCCGACCGAGATTGAAGAAATAAG
TCCTTCGCAACGGGATTTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCC
AgcaggacaaaaatgctcactgcgacctgaaaaataaagatatctcTCNA
AAATAAAttcagaaaaagtaaataaacagaaaggataccgtgagattggg
taacttgcatcagtggaggctaacatgcatagccctcaaatgaaagacct
ggctggtcattaaaatacaaagttaaatcaaaaNcaggacaaaaatgctc
actgcgacctgaaaaataaagatatctctctgaaatttccaggagatgtt
cagaaagacctaaggatctcaaaa

Coding sequence (CDS) from alignment at sc0000374:253254..255677+

>TCONS_00020945 ID=TCONS_00020945|Name=TCONS_00020945|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000374:253254..255677+ (Clytia hemisphaerica)
ATGTTTAAACTTGCAGCTCAGtgtaTCAGTACTACCCAAACTAGAGGTAC
ACAAAAATTTGTCAGGATCTGcgacaaaatttttgattgcCTAAATGGAC
AGTATCCTAACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTC
AGACAGTACACAGAAACAAAAGACAAATGttttgagtgGCTTgcggaatt
tttgaaaagtgggaAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGCA
AAGAAAAAAGGAGACTGTACCTGGCTATTCAAACTGTTGAAAGGCTGCAT
GCAAACTACAGGAGCTGCTTGTTGAATATCCTGGATTTTACATTTTGGAT
CATGGTCGTCTAAATGTTTAAACTTGCAGCTCAGtgtaTCAGTACTACCC
AAACTAGAGGTACACAAAAATTTGTCAGGATCTGcgacaaaatttttgat
tgcCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAGAAAACCGGC
AAAACCTGCTCTCAGACAGTACACAGAAACAAAAGACAAATGttttgagt
gGCTTgcggaatttttgaaaagtgggaAAACAGAGGCACCTACACCTGGC
TTGCAAAGGAGCAAAGAAAAAAGGAGACTGTACCTGGCTATTCAAACTGT
TGAAAGGCTGCATGCAAACTACAGGAGCTGCTTGTTGAATATCCTGGATT
TTACATTTTGGATCATGGTCGTCTAAATGTTTAAACTTGCAGCTCAGtgt
aTCAGTACTACCCAAACTAGAGGTACACAAAAATTTGTCAGGATCTGcga
caaaatttttgattgcCTAAATGGACAGTATCCTAACCAAGATATGGCAA
CAAGAAAACCGGCAAAACCTGCTCTCAGACAGTACACAGAAACAAAAGAC
AAATGttttgagtgGCTTgcggaatttttgaaaagtgggaAAACAGAGGC
ACCTACACCTGGCTTGCAAAGGAGCAAAGAAAAAAGGAGACTGTACCTGG
CTATTCAAACTGTTGAAAGGCTGCATGCAAACTACAGGAGCTGCTTGTTG
AATATCCTGGATTTTACATTTTGGATCATGGTCGTCTAAATGTTTAAACT
TGCAGCTCAGtgtaTCAGTACTACCCAAACTAGAGGTACACAAAAATTTG
TCAGGATCTGcgacaaaatttttgattgcCTAAATGGACAGTATCCTAAC
CAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTACAC
AGAAACAAAAGACAAATGttttgagtgGCTTgcggaatttttgaaaagtg
ggaAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGCAAAGAAAAAAGG
AGACTGTACCTGGCTATTCAAACTGTTGAAAGGCTGCATGCAAACTACAG
GAGCTGCTTGTTGAATATCCTGGATTTTACATTTTGGATCATGGTCGTCT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011744XLOC_011744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020945-exon-sc0000374-1491911889:253254..253328TCONS_00020945-exon-sc0000374-1491911889:253254..253328Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1510915933:253254..253328TCONS_00020945-exon-sc0000374-1510915933:253254..253328Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1575043694:253254..253328TCONS_00020945-exon-sc0000374-1575043694:253254..253328Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1491911889:253786..253928TCONS_00020945-exon-sc0000374-1491911889:253786..253928Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1510915933:253786..253928TCONS_00020945-exon-sc0000374-1510915933:253786..253928Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1575043694:253786..253928TCONS_00020945-exon-sc0000374-1575043694:253786..253928Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1491911889:254325..254489TCONS_00020945-exon-sc0000374-1491911889:254325..254489Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1510915933:254325..254489TCONS_00020945-exon-sc0000374-1510915933:254325..254489Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1575043694:254325..254489TCONS_00020945-exon-sc0000374-1575043694:254325..254489Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1491911889:254848..254972TCONS_00020945-exon-sc0000374-1491911889:254848..254972Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1510915933:254848..254972TCONS_00020945-exon-sc0000374-1510915933:254848..254972Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1575043694:254848..254972TCONS_00020945-exon-sc0000374-1575043694:254848..254972Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1491911889:255163..255677TCONS_00020945-exon-sc0000374-1491911889:255163..255677Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1510915933:255163..255677TCONS_00020945-exon-sc0000374-1510915933:255163..255677Clytia hemisphaericaexon
TCONS_00020945-exon-sc0000374-1575043694:255163..255677TCONS_00020945-exon-sc0000374-1575043694:255163..255677Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020945-proteinTCONS_00020945-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:253254..255677 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.416866	0	0	0	1.79414	0.737198	1.57284	1.78739	1.77062	1.02631	2.39104	1.96872	1.27428	0.378531	0.712684	0.329742	0	0.563401	1.18356	1.47477	0	0	0.284939	0.64229	0.543393	0.682242	0	1.43325	0	0.509671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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