TCONS_00020944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020944
Unique NameTCONS_00020944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020944 ID=TCONS_00020944|Name=TCONS_00020944|organism=Clytia hemisphaerica|type=transcript|length=965bp
GTAGAGGATGCCTTGAGcTGGACAAACACTCAATCAGTTGGAACCATGTG
GTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTTATACATG
ATCAAATTAACAAGAGAACACATCGACTAAATATGATGAATGTTTAAACT
TGCAGCTCAGtgtaTCAGTACTACCCAAACTAGAGGTACACAAAAATTTG
TCAGGATCTGcgacaaaatttttgattgcCTAAATGGACAGTATCCTAAC
CAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTACAC
AGAAACAAAAGACAAATGttttgagtgGCTTgcggaatttttgaaaagtg
ggaAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGCAAAGAAAAAAGG
AGACTGTACCTGGCTATTCAAACTGTTGAAAGGCTGCATGCAAACTACAG
GAGCTGCTTGTTGAATATCCTGGATTTTACATTTTGGATCATGGTCGTCT
AAGTCAGCCAACCTCAACTTATGTGGGCAGGTCGTTCTGAtggttttttc
tattgtttaaattattgttatttaaaaaattgtttttttagatNTTTGGT
GTATCACATTGCTAGGTTCCGACCGAGATTGAAGAAATAAGTCCTTCGCA
ACGGGATTTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCCAgcaggaca
aaaatgctcactgcgacctgaaaaataaagatatctcTCNAAAATAAAtt
cagaaaaagtaaataaacagaaaggataccgtgagattgggtaacttgca
tcagtggaggctaacatgcatagccctcaaatgaaagacctggctggtca
ttaaaatacaaagttaaatcaaaaNcaggacaaaaatgctcactgcgacc
tgaaaaataaagatatctctctgaaatttccaggagatgttcagaaagac
ctaaggatctcaaaa
Run BLAST on NCBI

transcript from alignment at sc0000374:252520..255677+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020944 ID=TCONS_00020944|Name=TCONS_00020944|organism=Clytia hemisphaerica|type=transcript|length=3158bp|location=Sequence derived from alignment at sc0000374:252520..255677+ (Clytia hemisphaerica)
GTAGAGGATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTGTGGTCTGG
CTCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAgccaatttttaaatttc
atgtaCTCAACCATTGACTAGGTAGTTCTTCCAGTTCTTGTTGTCTTTCA
CCTTGTTTACGTGATCAGCTAAAAGTTGGCGGTTAATTTCGAAAAGTTTG
CTTCTTGGTAATACTGAAGGAAGAGATGGAAGAAGAATTTGAATTATGTC
GCAAACAAACAGCTGCCTTAGTAAAGTAGTGTAGATTATTATGCGGCCGG
TTTGTGATATGATAAGCCGtttcatcataaaaagtaagacTGTagaaaac
ttaaagaaacaGCTTCTTTTAAAGATGCTTTCAATGCTTTGGGAGTTGAT
ATTACTAATGATGCTGTTGATGTTCATCCTGAGAAAATCTGTGAAAAGTG
TAGAGTTGTTTGTATGAGTTTGAATCAGCATTGAAAGGCACCCAGAGGCA
CCCAAGCTGAAAGTAGGAAAAAAGAGAAAGCTAGGCATAAATCAACACAG
TGTGTATAAAACAACAACAGCATCAGATATTGATACCAGTGGTTTCGCAG
ATTGTGTTGATGGagagaaaatttcagaaattaaagAGACCGTGGCTTTG
TCTAATTATTGGTGCTGAAGACTTTATATTTGTTATTGATTGGTTTTTTT
GAATTGGGCGAAATAAATGAGGAAATCAATAAGTTGGAAAGGCAATGTGA
TGAGGAAGGCCAACAAGCGAGACAATCAGCCTCGCATGTTTTAGCTTTCA
TTGTACGAGGTATCTACTGgattacttttgtttttgttttttccctaCTG
CCATCTGCTTCAAGTGATGAGTTATTTCCTGTTGTCTGGGAGCTGTTGAA
GTGTTGgaatatttgagtttgaaagtCAGGTGTTTGGTATCTGATGGAGC
TTCTACAAACCGTTCATTTTATAAACTCAAAGAATAAGGAAGATACTGTA
ATTTCTTCAGCATTAATCTATGTGCCTGATGTGCCTTAGATAGAAATAAG
CTCTACATACTTCATTTGTGAGgacaaaacaattttgaaaactctCATGT
AAATAGAAGCACCAAAAATTTTGTAAGCCAATGGTTTGTCTATTATTTCC
AGAGGAAATACCTTAAATAATATCAATGATgatttgtttgaaatatttat
caCTACCAGgtgttgaaattaaaaaaaaatgattgaaattatATGGTcta
atttctttccttttagcTGGACAAACACTCAATCAGTTGGAACCATGTGG
TACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTTATACATGA
TCAAATTAACAAGAGAACACATCGACTAAATATGATGAATGTTTAAACTT
GCAGCTCAGGTAACTTAGATGATTACCATATTAACTCAAAAAAGTGCCTA
TATGTTATCTAATCAGGCTAGGTAAAGTCTGAGAATTAGGTTTGTCTGAA
ATAAAATGGCCTTTTTATGACAATAAAAATCCCATGATATGTATTCAGGT
ATTCAGTTGTCAATGACATTGAAATGACTATAGCTACAAGTTGACAAGTC
TGGTCTCgataattttagtttgatgactAGCTTGATATAAacagaaattt
tgaataatttttctggGCTCAACATCAAAACTTCTTCAGTGGCTTTTTCA
GCTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAGACTCTagct
tattttcattatttgtcCTGGATTCCTTTTGAAAGttacttcatttttat
tttagtgtaTCAGTACTACCCAAACTAGAGGTACACAAAAATTTGTCAGG
ATCTGcgacaaaatttttgattgcCTAAATGGACAGTATCCTAACCAAGA
TATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTACACAGAAA
CAAAAGACAAATGttttgaggtaatttttatccTATATTTTTCGATGGGA
TTAGTTTTTGTAGGTATTCTCACTAGNAATTTTTATCCTATATTTTTCAA
TTGGATTAGTTTTTGTAGGTATTCTCACTAGCTGCTAGTTGCCTTCAAGG
GTTAGGTGTTACTATATCCAGATAATTCTACTCCATACAATATGTGAATT
GAAATAAGATACATCTTATGATTTTAAAGgagcatttttttttattagag
atAATGTTGACATGACGGTTCACTTGTGTGTTGTGACCAAAttataactt
tttatcattttagtgGCTGACGGATACATTTTTGANACTTGTGTGTTGTG
ACCAAAttataactttttatcattttagtgGCTTgcggaatttttgaaaa
gtgggaAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGCAAAGAAAAA
AGGAGACTGTACCTGGCTATTCAAACTGTTGAAAGGCTGCATGCAAACTA
CAGGTTTGTAATGATTTTGCACTCAAAGGTTTTTTAGTATGAAATAGTAC
AGTGTTAATTTTAAGCAATCAATGTTTCTGCGAGTGCTCCTGGCCTTGCA
TGTTTTAgaggtgtttttttttcaatatagaAAACCGACCTTTTCTCAGT
CTTTATTCTTTCAATCAGacctttttcacttttcatcttgCAGGAGCTGC
TTGTTGAATATCCTGGATTTTACATTTTGGATCATGGTCGTCTAAGTCAG
CCAACCTCAACTTATGTGGGCAGGTCGTTCTGAtggttttttctattgtt
taaattattgttatttaaaaaattgtttttttagatNTTTGGTGTATCAC
ATTGCTAGGTTCCGACCGAGATTGAAGAAATAAGTCCTTCGCAACGGGAT
TTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCCAgcaggacaaaaatgc
tcactgcgacctgaaaaataaagatatctcTCNAAAATAAAttcagaaaa
agtaaataaacagaaaggataccgtgagattgggtaacttgcatcagtgg
aggctaacatgcatagccctcaaatgaaagacctggctggtcattaaaat
acaaagttaaatcaaaaNcaggacaaaaatgctcactgcgacctgaaaaa
taaagatatctctctgaaatttccaggagatgttcagaaagacctaagga
tctcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011744XLOC_011744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020944-exon-sc0000374-1491911889:252520..252536TCONS_00020944-exon-sc0000374-1491911889:252520..252536Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1510915933:252520..252536TCONS_00020944-exon-sc0000374-1510915933:252520..252536Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1575043694:252520..252536TCONS_00020944-exon-sc0000374-1575043694:252520..252536Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1491911889:253786..253928TCONS_00020944-exon-sc0000374-1491911889:253786..253928Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1510915933:253786..253928TCONS_00020944-exon-sc0000374-1510915933:253786..253928Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1575043694:253786..253928TCONS_00020944-exon-sc0000374-1575043694:253786..253928Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1491911889:254325..254489TCONS_00020944-exon-sc0000374-1491911889:254325..254489Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1510915933:254325..254489TCONS_00020944-exon-sc0000374-1510915933:254325..254489Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1575043694:254325..254489TCONS_00020944-exon-sc0000374-1575043694:254325..254489Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1491911889:254848..254972TCONS_00020944-exon-sc0000374-1491911889:254848..254972Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1510915933:254848..254972TCONS_00020944-exon-sc0000374-1510915933:254848..254972Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1575043694:254848..254972TCONS_00020944-exon-sc0000374-1575043694:254848..254972Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1491911889:255163..255677TCONS_00020944-exon-sc0000374-1491911889:255163..255677Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1510915933:255163..255677TCONS_00020944-exon-sc0000374-1510915933:255163..255677Clytia hemisphaericaexon
TCONS_00020944-exon-sc0000374-1575043694:255163..255677TCONS_00020944-exon-sc0000374-1575043694:255163..255677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:252520..255677 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.500733	0.00255268	0.197016	0	0	0.535479	0	0	0.00120994	0	0	0.509103	1.18145	3.74553e-08	0.352351	0.572565	0.000340097	0.688053	2.05749	0.023258	0.385183	0	0	0	0	0.553187	0	0.47453	0.197581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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