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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020943 ID=TCONS_00020943|Name=TCONS_00020943|organism=Clytia hemisphaerica|type=transcript|length=2837bp
aatctttttatgttttatttgaATGGGAAGTGATTTAAATGCTTTCCGAT
GTGTTTTTCTTATAGATGCTGAGAGATGTACCGAAAGTGAAAAGCGTTTC
GCCTGCGTCCTCAGCTGGTTCACCGAACCCTCAGAAGAAAACTAGTGCAA
cgattccaaaaattaaaaaagaatctCAAAACTCCACGACTACATCCGTT
AAACGGTCCAGCGAGGACGCGCTGTCGTCGAGTAAACCTAAAAAGAAGAA
GAGTAACGACCACGAGCGAGCGCCCACACCTGTGAATGCTGGATTGAAAG
AAATCTCTATTCTATCACCTGCTACTGATGCTGCTGCCAAGAGTAACAGT
GCGCGGAAAGTGAAAGATGGTACTCGGCGACGGAGTGTCGACGCTAACGA
GCCAAGTCCAAAGCACCATTCATCCAAAGAAAGTAAACATAAAAGCAAAG
ACTCCAAattgaaaaaagacaaaagtttaGACTTAAATTCGTCTAGTGGC
GGCATTCcaaaactcaaattttcaataaaaagtaaaTCGGACGGGTCGTG
GGCGGCCACTTCCGTTACGAGTAAAGAAAACGGGAACGCTCCTGAGGATA
GTAATATTTCAAACACCGTACTGGTGAATCCGAACTCAACAGTATCTCAA
CAAAATGAACTAGTCCGCAATGTTTTGGACGGTTTCCGGCAACAAAGTTC
TGAAGACGATATCAATGAAGAGGTTGAGAAGAGTATGAATTCTTCCCTTT
CTTCAAACGGTTCTTTAGAGACTACATCAAAATCCTCTTATAAGAAAGCG
ACTTCTAAACACAGATCACCTTCGGTCACGGTCAAAACGAACGGTACTCA
TCATTCTTCGCATCATCCGAGTAAGGGAAAGGTCATCAAAGAACCTGTAG
AAACGAAAACGACTTCGGAAACAGGTAAAAAGATGCCGGATCCTACCCTC
ACCCAGCCAGAACTGAACGAAATGTTCAGCAAGATCTCCGAATCACAAGA
CTCTAATATCTTGCAAGGCATTGTGGATATTGTCGAAGCGACGGGGGATT
ACATGATTACGTCATcaactttcgatttcgatttgtGTACACTGAACAAT
GATACTTTGGTTTCTATTAAACAATATTTAGAAGCTCATTGATAAATGGT
TGAGATTGACCTTGCGCAATTGCAATGTGNCGATACTTTGGTTTCTATCA
AACAATATTTAGAAGCTCATTGATAAATGGTTGAGATTGACCTTGCGCAA
TTGCAATGTGACAAAGATAGATAGCTTGGTAAAACGGGCCATTTCAAGGT
CGAAATGAAGTGAATCATGGATAATCAGGAATCCCATCACGTCTTCCGTC
CCGTTAACTGGACACAAAACACTTCCAAACATTTTTAGTACAACAGAAAT
TCGCTTTTAATGCGTGGGTGTCCTGATTACTCATGATTTCATTCAACCGT
TAAATTATTCTTCACGGTTCCACGGATAAGTTATTTCATTGATTGGGAaa
gtttgaaaaccaaaaatgAAACCAATAGGAAGAAGTATCATCTGCTTTTG
GAATAATACAAAACAAAACGTGCAAACATGGAGGCTTAGTTTTTtactat
acaccttttcgaccgtagccgacaattgccgcgcgggcaatTTTTTGTCC
GTGCAATAGAAATAATGACTGAGACGGTTTTAGGATGGTAAAACGGACAT
AAAAATGCCCGTGCGGCAATTGGCGACTACGGTCGTAAAAGTGTATCATG
TCAAAGGGAAGTCAGAAGTATTAGCGATAAAGCGTTATAAATGGTGTTTT
GATTGTGTTGTCTACaactcttttatttttatatattttttagaaagatg
gtcatcattgttttttataagacacAAGAGTTGTTTATTTGCTGTAGATA
TCTAGCAACGCTTGTTAatagaattttattttgatgctACTGTACACGCT
TTATTTTATAAggataacttctataagaatatcagcgTGAGATTTCGGAG
TTAGGACAATAGACCTAATAAGAATACTGCTCACCCCCAGCcaaactatt
cttataaaaaagcgtgtactgttTCAGAGGGGAAAATCACTTTACGAATT
ATTGTACCCTATTTTGAGTAATTTCAATGCTGGACAAAAAATTGAATGAT
GAGTTTCACCAACCAACATACTTATTTGCATCTTATCTGCATCACTTATT
TAACTGATAGACTTGTACACTCATGACTGTCGATTACAAATGTTTGGGAG
TGGTTAAATAAAAGATATTTCACGACTAGCCACCCACTGAAGTCTAAACG
CTTATCGAGACGAATGTTTATAGAATTTCTTAGATTTTTCGGGTAAATTA
TAATTCATAAGAATATAATAAATGGATAATGCAtggatgctttgaaagct
taacGAGTTTTTCGTATTATGAAAAATGTTTCTATTAAATTTCCATGCAG
TCATGGCCAGACAATTCATTTTTACGAGTCCATTTAGGTTTTgtaattaa
aatttattttttagctATTGTACGGTTTAGATTTCTTAAAAATTCTTAAg
tataaatacaaaaaatattgacaaaatcatTGTAAAATTATGTGAAAAAG
TTGCAACATTTAGAAGCGGTAAGCCTAAACAGCAATGCCTACCTAATCCA
CTACAAACATGGACagaatatttgagacaaaaacgattttttagcgcgtt
aaactacaaaatcgaaatattcaatgaagaaggtagaagtgctaaaatag
caattctcgcccgaactttaaattctgaaaaacgttaaaatacactaaaa
tctcgaTACATTTTGAACATGATCTAGAAAAGAATTT Run BLAST on NCBI transcript from alignment at sc0000374:181956..185490+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020943 ID=TCONS_00020943|Name=TCONS_00020943|organism=Clytia hemisphaerica|type=transcript|length=3535bp|location=Sequence derived from alignment at sc0000374:181956..185490+ (Clytia hemisphaerica)
aatctttttatgttttatttgaATGGGAAGTGATTTAAATGCTTTCCGAT
GTGTTTTTCTTATAGATGCTGAGGTATTGGTTTTCGCAATTCAGATGGTC
TTTCTTGTTCAATGAGAAATAACTTTATTCTCAGGACGTTTTggtcatta
atttttgaaaaaatcatagCTTAGATATTGCTTTGTAGTTGGTGGgtgct
tgattgattgattgattaattgattgattgattttcttaatcACGTCTTC
TTTTATTTCTCAGAGATGTACCGAAAGTGAAAAGCGTTTCGCCTGCGTCC
TCAGCTGGTTCACCGAACCCTCAGAAGAAAACTAGTGCAAcgattccaaa
aattaaaaaagaatctCAAAACTCCACGACTACATCCGTTAAACGGTCCA
GCGAGGACGCGCTGTCGTCGAGTAAACCTAAAAAGAAGAAGAGTAACGAC
CACGAGCGAGCGCCCACACCTGTGAATGCTGGATTGAAAGAAATCTCTAT
TCTATCACCTGCTACTGATGCTGCTGCCAAGAGTAACAGTGCGCGGAAAG
TGAAAGATGGTACTCGGCGACGGAGTGTCGACGCTAACGAGCCAAGTCCA
AAGCACCATTCATCCAAAGAAAGTAAACATAAAAGCAAAGACTCCAAatt
gaaaaaagacaaaagtttaGACTTAAATTCGTCTAGTGGCGGCATTCcaa
aactcaaattttcaataaaaagtaaaTCGGACGGGTCGTGGGCGGCCACT
TCCGTTACGAGTAAAGAAAACGGGAACGCTCCTGAGGATAGTAATATTTC
AAACACCGTACTGGTGAATCCGAACTCAACAGTATCTCAACAAAATGAAC
TAGTCCGCAATGTTTTGGACGGTTTCCGGCAACAAAGTTCTGAAGACGAT
ATCAATGAAGAGGTTGAGAAGAGTATGAATTCTTCCCTTTCTTCAAACGG
TTCTTTAGAGACTACATCAAAATCCTCTTATAAGAAAGCGACTTCTAAAC
ACAGATCACCTTCGGTCACGGTCAAAACGAACGGTACTCATCATTCTTCG
CATCATCCGAGTAAGGGAAAGGTCATCAAAGAACCTGTAGAAACGAAGTA
AGAGCTCTTTGTTgtttctttcttcaattttttgatttgtttttgtttaa
cgTTCCTCAATTTGCTATATATGATGCTGCAATGGAGTCTCCGTAACTCG
GACACGCACGGGAAAcaaaaatttgtatatgttaaggaaatttcgagatg
TGGAGTAAGGttcataaggcattgttaacttcAGGGACGAAAaattttgt
tcgagttaaagagacattggagttatagaggttcgagttaaagagactcc
acttcAATAGATTAGCCGACTGATTGAGAAATTAGAATTTAGGGGTCTAC
TCGActattattcatgatattttgGAATAGGACTCCTCCATAATATACAC
TTTAAAGCAAACAGacttcgttcttttttttcaacgAGGCTCTCTCAATT
ACTTTACCAAGAAAAAGAGGACCGAAAGTACAATACTTAGTTCTCTCCCA
AGATCTTCTGGACTCTCCTTACTTAAACGCTATTTCGTCTTTTTGCACTT
TTTAGAACGACTTCGGAAACAGGTAAAAAGATGCCGGATCCTACCCTCAC
CCAGCCAGAACTGAACGAAATGTTCAGCAAGATCTCCGAATCACAAGACT
CTAATATCTTGCAAGGCATTGTGGATATTGTCGAAGCGACGGGGGATTAC
ATGATTACGTCATcaactttcgatttcgatttgtGTACACTGAACAATGA
TACTTTGGTTTCTATTAAACAATATTTAGAAGCTCATTGATAAATGGTTG
AGATTGACCTTGCGCAATTGCAATGTGNCGATACTTTGGTTTCTATCAAA
CAATATTTAGAAGCTCATTGATAAATGGTTGAGATTGACCTTGCGCAATT
GCAATGTGACAAAGATAGATAGCTTGGTAAAACGGGCCATTTCAAGGTCG
AAATGAAGTGAATCATGGATAATCAGGAATCCCATCACGTCTTCCGTCCC
GTTAACTGGACACAAAACACTTCCAAACATTTTTAGTACAACAGAAATTC
GCTTTTAATGCGTGGGTGTCCTGATTACTCATGATTTCATTCAACCGTTA
AATTATTCTTCACGGTTCCACGGATAAGTTATTTCATTGATTGGGAaagt
ttgaaaaccaaaaatgAAACCAATAGGAAGAAGTATCATCTGCTTTTGGA
ATAATACAAAACAAAACGTGCAAACATGGAGGCTTAGTTTTTtactatac
accttttcgaccgtagccgacaattgccgcgcgggcaatTTTTTGTCCGT
GCAATAGAAATAATGACTGAGACGGTTTTAGGATGGTAAAACGGACATAA
AAATGCCCGTGCGGCAATTGGCGACTACGGTCGTAAAAGTGTATCATGTC
AAAGGGAAGTCAGAAGTATTAGCGATAAAGCGTTATAAATGGTGTTTTGA
TTGTGTTGTCTACaactcttttatttttatatattttttagaaagatggt
catcattgttttttataagacacAAGAGTTGTTTATTTGCTGTAGATATC
TAGCAACGCTTGTTAatagaattttattttgatgctACTGTACACGCTTT
ATTTTATAAggataacttctataagaatatcagcgTGAGATTTCGGAGTT
AGGACAATAGACCTAATAAGAATACTGCTCACCCCCAGCcaaactattct
tataaaaaagcgtgtactgttTCAGAGGGGAAAATCACTTTACGAATTAT
TGTACCCTATTTTGAGTAATTTCAATGCTGGACAAAAAATTGAATGATGA
GTTTCACCAACCAACATACTTATTTGCATCTTATCTGCATCACTTATTTA
ACTGATAGACTTGTACACTCATGACTGTCGATTACAAATGTTTGGGAGTG
GTTAAATAAAAGATATTTCACGACTAGCCACCCACTGAAGTCTAAACGCT
TATCGAGACGAATGTTTATAGAATTTCTTAGATTTTTCGGGTAAATTATA
ATTCATAAGAATATAATAAATGGATAATGCAtggatgctttgaaagctta
acGAGTTTTTCGTATTATGAAAAATGTTTCTATTAAATTTCCATGCAGTC
ATGGCCAGACAATTCATTTTTACGAGTCCATTTAGGTTTTgtaattaaaa
tttattttttagctATTGTACGGTTTAGATTTCTTAAAAATTCTTAAgta
taaatacaaaaaatattgacaaaatcatTGTAAAATTATGTGAAAAAGTT
GCAACATTTAGAAGCGGTAAGCCTAAACAGCAATGCCTACCTAATCCACT
ACAAACATGGACagaatatttgagacaaaaacgattttttagcgcgttaa
actacaaaatcgaaatattcaatgaagaaggtagaagtgctaaaatagca
attctcgcccgaactttaaattctgaaaaacgttaaaatacactaaaatc
tcgaTACATTTTGAACATGATCTAGAAAAGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020943-exon-sc0000374-1491911889:181956..182028 | TCONS_00020943-exon-sc0000374-1491911889:181956..182028 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1510915933:181956..182028 | TCONS_00020943-exon-sc0000374-1510915933:181956..182028 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1575043694:181956..182028 | TCONS_00020943-exon-sc0000374-1575043694:181956..182028 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1491911889:182219..183052 | TCONS_00020943-exon-sc0000374-1491911889:182219..183052 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1510915933:182219..183052 | TCONS_00020943-exon-sc0000374-1510915933:182219..183052 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1575043694:182219..183052 | TCONS_00020943-exon-sc0000374-1575043694:182219..183052 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1491911889:183561..185490 | TCONS_00020943-exon-sc0000374-1491911889:183561..185490 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1510915933:183561..185490 | TCONS_00020943-exon-sc0000374-1510915933:183561..185490 | Clytia hemisphaerica | exon |
| TCONS_00020943-exon-sc0000374-1575043694:183561..185490 | TCONS_00020943-exon-sc0000374-1575043694:183561..185490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:181956..185490 + |
Blast
The following BLAST results are available for this feature:
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