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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020939 ID=TCONS_00020939|Name=TCONS_00020939|organism=Clytia hemisphaerica|type=transcript|length=2882bp
GATCGATGAAGGAAGCATTAGTTGCATGATATAATATTTAGAAGTATGGG
AATATACGGCGGAATCTAACAGAACAACCAAGGATGGCGACACAAATGAC
TCAAGGGGTAATTCTACTCCTGGTTTGTTTCACACTGGCCAATGTTTATT
ACTTCATACAAAACTACAGCCAGAATACGTATTTCCAAGAGGTTAGAAGG
ACTTTGACCATcgtcaaaaataaagaagagaACGTCGATGTTACTAACAC
GGCGAAATCAAGTTCCGGTGGGTTGACTCAAGTTAATGAGATATTGAAAC
GTTTACAAACTTTGGAAACGAAGCGAAATGTAGACATGGCcaataaaaca
aaaactgtTTTGGATGGACTGATGGGTAAGTTCTGGCCAAACGGTCAACA
GGCTAGTGTGGCTGACGAAGCTGAAAATCTGAAATGGTTAAATCGTACGA
ATGCGAAAGGCTTCGCGGAATACGGCGACGGTACGTGTCCCGTCACAACA
GATCGTCCACCGTGGCAAAAATTACTTCGCGAATGGGTAAAAATCGCTAA
GAAGTATAAAATCCGTTATTTCTTATCTGCCGGTTCGTTACTCGGGGCGT
GGCGTGCGGAAGACGTGATCCCGTATGATGCAGATATGGACATACGTATC
CACAtcgatgattttgaaaaactctaTCCGTTACGTCAACGTAAGTTCGT
GTGGGACGCGTATGATGATTACGAATcgcatttttattttacgaaggATT
GGCGATTGCCGTACGATTTACGGCGTCGGTATACGTGTAAAGGGAAGAAG
GTTCATGAGTATGAAGGACAATGCTCATTTACGGACCCGAACGCACGTAT
GATTTACCGTCAATGGCATATGGACTTATACGCATACACAACGTATACTG
ACGTCGTCAAATTTTTGCCACGCGACGCCGCGTACGAGTACCGTAAGGAA
GATATTCTACCGATCACTAAATGTATGTTTATGGAAATTGAAACACGATG
TCCACAAAATCCGACGGCCATTTTTAAAAGACTTTACGGTAGTTCAAGAC
CTTTGCCTACCAAGAAATGTGTAAACAAAAAGTACGTTAGAGTCTAGATT
TAGAGCATCATGAATTTAAGCGTTCTGACATTTGCGTTTTgtaatagggg
gggggggttcaactTTTTCAGTGTATGTTTTTAGTTAGCCATAAGATAGC
ATTTTGAAGCTTCTGTCTTGTTTATCtcaatattttatctttttttaaca
ttatatTCTTTACTCGCGCTATCATTTGGGAATTTTTCCTCACCATGACC
TTTTTAGGGAAATTCAAGTTTAcaaacactgggcgaaataagagatatct
tgaaaatatgatatttccaattacttttgtaaatatggaaatatgacttt
tctatatttccaaagttgaggaaatatcatatttcatgatatttccaaat
ctgaaacatcaaattttcaaaatatgatgtttcaacaatgaatttcagaa
aagtcatatttccatcaaggtcaaattttatcaatgaatacacatacacg
ttttttataagactaTCCAAGATTTTGAAGCCTGcggatgttcttaagtt
tttgagttttaagcctagaaaTGATCTTAAAGAGTTCTTATTTTCTCACT
ATTTTGTTGGTATATTtctccattttcctaagaaattggatgttttagag
tccacaaacatataaaaaaaacgtgtaagctaacgaaattttgtacaaaa
tttcgaatgtttttttcaaataattatcAATAAGATTCTATTATCATGAA
ACTTTGAACCTATCTCGTTAAGTTGacaaagttcttataaaattagtGTA
ATGATATcttataaaatttacaaaaacaacaacaatttatgaaaaataac
aattacATTTGGAGACGCTTATGCATCATGTTATAACTTGCAATACCAAA
ATATCTTTGatgcaaaatatttgtttaaggTGAAACGATCCTCCTTCGAA
AAAGCCACTAAGGATTTCTTAATTCTAAAAAAATAGGGTGTCAGATATGA
AATATATCAATATTGCCCTAAAACAGAGTACAGGACAACAGCAGATAGGA
CATAGACAACAGGACATAAAGTTAGAGGACTTGAATAATTAGAAGTTCCC
CTTTAATTATGTCTTCTCCTTCAAGAGTATTCGCTGGTCTTCGCCAGCGA
TCAATAACCTCCTTTGCTTCGACTTTGATTTTGCCTTGTTTGACGTCATT
GTCGAGAAAGGCGAGGTCGGTCACGTGTCTACTTTCAATACATGAATCCA
CGTGTCGATGTGCGATAATGATGTGACCACCTGGTTTCACATATCGTATA
ATGTCCGTCAAGCATTCGTACCCAGGGTGTGATGCTGAACAAAACAAAAC
ACCTGATGAACAAACAACGTCATATTCTTGAGACGGGATGACAGAATCAT
CGTCTCCACTTTTCAGTTGATAGAATTTCTGCATTTTTCCTTTCGATCGA
GCAACATCAATGATTTCTTTGCACGGATCTAACCCATCAATATTTTGATA
ACCATGTTCAGAAAGAAGATCAGAGGTTGCGCCTGTACCACATCCATAGT
CAAGGATCTTGATATTTTTCTCATTCGAATACAACTTCAGGATTTTTGTA
GCCACAGCTTTAGGGCCAGAATATTCTTCCTCAGAAGCCCACTCATCGTA
CGTTTTTGCGTATTTACTGTAAAGTTCTTGTTGCTTGGCAAACTCTTCAC
TCGTATCTTCACGTACATCGATGAAATATGACCATGCTACACTGGAAAAG
TTTTCCGCTTGTTGTGTTACTGCAGCCATCCTTTTTTAGGTATGTTATGT
CTGCACAACTCTCTCTGCAGAAAATGACACTT Run BLAST on NCBI transcript from alignment at sc0000374:158478..161872+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020939 ID=TCONS_00020939|Name=TCONS_00020939|organism=Clytia hemisphaerica|type=transcript|length=3395bp|location=Sequence derived from alignment at sc0000374:158478..161872+ (Clytia hemisphaerica)
GATCGATGAAGGAAGCATTAGTTGCATGATATAATGTAATCTACAAgtat
tcaaaactttttgtaaTGTCTCTCTCTAGAAGAAACTTGTTGAGCAGTGT
TTTGataccgtgagatcaggtaacttgcatcattggagggaaacttgcat
agccatcaaatgactgaccaatcaaagcagcaaaatttcaaagcaaatga
actacgcagcttcgctcacagctctactctactatttttgttttgattta
actttgtattttaatgaccagccaggtcattcatttgagggctatgcatg
ttagcctccattgatgcaagttacccgatctcacggtatatcaCGGCTTG
CACTTTTGGTTTTTGGTAAAACGCATTTTAAAGAGAGAATGATCTAAATA
TCTAACTGTAAAAAGAACAAGCGGATGCTCCTCAGATAGAAAATAGGCTT
ATAATAGAAAGTCAcagatttcaaactttcagccaAACTCTATCAGGTTC
TGGTGTCATGAAATAAGTGTATtagtatattttttgttttcatttcagAT
TTAGAAGTATGGGAATATACGGCGGAATCTAACAGAACAACCAAGGATGG
CGACACAAATGACTCAAGGGGTAATTCTACTCCTGGTTTGTTTCACACTG
GCCAATGTTTATTACTTCATACAAAACTACAGCCAGAATACGTATTTCCA
AGAGGTTAGAAGGACTTTGACCATcgtcaaaaataaagaagagaACGTCG
ATGTTACTAACACGGCGAAATCAAGTTCCGGTGGGTTGACTCAAGTTAAT
GAGATATTGAAACGTTTACAAACTTTGGAAACGAAGCGAAATGTAGACAT
GGCcaataaaacaaaaactgtTTTGGATGGACTGATGGGTAAGTTCTGGC
CAAACGGTCAACAGGCTAGTGTGGCTGACGAAGCTGAAAATCTGAAATGG
TTAAATCGTACGAATGCGAAAGGCTTCGCGGAATACGGCGACGGTACGTG
TCCCGTCACAACAGATCGTCCACCGTGGCAAAAATTACTTCGCGAATGGG
TAAAAATCGCTAAGAAGTATAAAATCCGTTATTTCTTATCTGCCGGTTCG
TTACTCGGGGCGTGGCGTGCGGAAGACGTGATCCCGTATGATGCAGATAT
GGACATACGTATCCACAtcgatgattttgaaaaactctaTCCGTTACGTC
AACGTAAGTTCGTGTGGGACGCGTATGATGATTACGAATcgcatttttat
tttacgaaggATTGGCGATTGCCGTACGATTTACGGCGTCGGTATACGTG
TAAAGGGAAGAAGGTTCATGAGTATGAAGGACAATGCTCATTTACGGACC
CGAACGCACGTATGATTTACCGTCAATGGCATATGGACTTATACGCATAC
ACAACGTATACTGACGTCGTCAAATTTTTGCCACGCGACGCCGCGTACGA
GTACCGTAAGGAAGATATTCTACCGATCACTAAATGTATGTTTATGGAAA
TTGAAACACGATGTCCACAAAATCCGACGGCCATTTTTAAAAGACTTTAC
GGTAGTTCAAGACCTTTGCCTACCAAGAAATGTGTAAACAAAAAGTACGT
TAGAGTCTAGATTTAGAGCATCATGAATTTAAGCGTTCTGACATTTGCGT
TTTgtaatagggggggggggttcaactTTTTCAGTGTATGTTTTTAGTTA
GCCATAAGATAGCATTTTGAAGCTTCTGTCTTGTTTATCtcaatatttta
tctttttttaacattatatTCTTTACTCGCGCTATCATTTGGGAATTTTT
CCTCACCATGACCTTTTTAGGGAAATTCAAGTTTAcaaacactgggcgaa
ataagagatatcttgaaaatatgatatttccaattacttttgtaaatatg
gaaatatgacttttctatatttccaaagttgaggaaatatcatatttcat
gatatttccaaatctgaaacatcaaattttcaaaatatgatgtttcaaca
atgaatttcagaaaagtcatatttccatcaaggtcaaattttatcaatga
atacacatacacgttttttataagactaTCCAAGATTTTGAAGCCTGcgg
atgttcttaagtttttgagttttaagcctagaaaTGATCTTAAAGAGTTC
TTATTTTCTCACTATTTTGTTGGTATATTtctccattttcctaagaaatt
ggatgttttagagtccacaaacatataaaaaaaacgtgtaagctaacgaa
attttgtacaaaatttcgaatgtttttttcaaataattatcAATAAGATT
CTATTATCATGAAACTTTGAACCTATCTCGTTAAGTTGacaaagttctta
taaaattagtGTAATGATATcttataaaatttacaaaaacaacaacaatt
tatgaaaaataacaattacATTTGGAGACGCTTATGCATCATGTTATAAC
TTGCAATACCAAAATATCTTTGatgcaaaatatttgtttaaggTGAAACG
ATCCTCCTTCGAAAAAGCCACTAAGGATTTCTTAATTCTAAAAAAATAGG
GTGTCAGATATGAAATATATCAATATTGCCCTAAAACAGAGTACAGGACA
ACAGCAGATAGGACATAGACAACAGGACATAAAGTTAGAGGACTTGAATA
ATTAGAAGTTCCCCTTTAATTATGTCTTCTCCTTCAAGAGTATTCGCTGG
TCTTCGCCAGCGATCAATAACCTCCTTTGCTTCGACTTTGATTTTGCCTT
GTTTGACGTCATTGTCGAGAAAGGCGAGGTCGGTCACGTGTCTACTTTCA
ATACATGAATCCACGTGTCGATGTGCGATAATGATGTGACCACCTGGTTT
CACATATCGTATAATGTCCGTCAAGCATTCGTACCCAGGGTGTGATGCTG
AACAAAACAAAACACCTGATGAACAAACAACGTCATATTCTTGAGACGGG
ATGACAGAATCATCGTCTCCACTTTTCAGTTGATAGAATTTCTGCATTTT
TCCTTTCGATCGAGCAACATCAATGATTTCTTTGCACGGATCTAACCCAT
CAATATTTTGATAACCATGTTCAGAAAGAAGATCAGAGGTTGCGCCTGTA
CCACATCCATAGTCAAGGATCTTGATATTTTTCTCATTCGAATACAACTT
CAGGATTTTTGTAGCCACAGCTTTAGGGCCAGAATATTCTTCCTCAGAAG
CCCACTCATCGTACGTTTTTGCGTATTTACTGTAAAGTTCTTGTTGCTTG
GCAAACTCTTCACTCGTATCTTCACGTACATCGATGAAATATGACCATGC
TACACTGGAAAAGTTTTCCGCTTGTTGTGTTACTGCAGCCATCCTTTTTT
AGGTATGTTATGTCTGCACAACTCTCTCTGCAGAAAATGACACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020939-exon-sc0000374-1491911889:158478..158512 | TCONS_00020939-exon-sc0000374-1491911889:158478..158512 | Clytia hemisphaerica | exon |
| TCONS_00020939-exon-sc0000374-1510915933:158478..158512 | TCONS_00020939-exon-sc0000374-1510915933:158478..158512 | Clytia hemisphaerica | exon |
| TCONS_00020939-exon-sc0000374-1575043694:158478..158512 | TCONS_00020939-exon-sc0000374-1575043694:158478..158512 | Clytia hemisphaerica | exon |
| TCONS_00020939-exon-sc0000374-1491911889:159026..161872 | TCONS_00020939-exon-sc0000374-1491911889:159026..161872 | Clytia hemisphaerica | exon |
| TCONS_00020939-exon-sc0000374-1510915933:159026..161872 | TCONS_00020939-exon-sc0000374-1510915933:159026..161872 | Clytia hemisphaerica | exon |
| TCONS_00020939-exon-sc0000374-1575043694:159026..161872 | TCONS_00020939-exon-sc0000374-1575043694:159026..161872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:158478..161872 + |
Blast
The following BLAST results are available for this feature:
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