|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020929 ID=TCONS_00020929|Name=TCONS_00020929|organism=Clytia hemisphaerica|type=transcript|length=959bp
TTAGAAAATAAAACGCAATTCAAAGTTGGATAAAAAATGGAACCAAAAAT
TATGAGCAACATCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCG
ATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCG
AAACCAAAACCGATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCC
ATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGA
AACCAAGGATTGAtaatatcgggaaatcgggaaatggAGGGATCAGAGTG
AGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGA
GATGATTGTCACCAAAAATGGAAGACGAATGTTTCCAGTACTAAAAACAT
CCATTCAAGGATTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTT
GTTCCTGTAGATGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCG
TGGTGGAAAACCGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGG
ACTCACCTAACTTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCG
AAAGTAAAACTTACcaataaagaaaataacaataatcaAGTGGTGATGCT
GAATTCACTGCACAAATACGAACCACGTATGCATGTTTTAAAGGTGGGTA
GCAAAGAATCAGAAAGAACGGTTTCCACTCACTCATTTGAAGAAACAGTT
TTTATCGCTGTCACTGCTTACCAAAATGAAGAGATCACATCACTAAAGAT
CAAATACAATCCATTCGCAAAAGCTTTCTTAGACGCCAAAGAACGTTCAG
AGCAACAAATCGCAATCCACCCAAGACGTTTTGAATTTCCTTGCATACCA
CCACCAACGGTCGGGGGTCCAGGAGCCCTATGTAGATGCAGCTTAGATGG
ATACCCTTT Run BLAST on NCBI transcript from alignment at sc0000374:62777..69012+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020929 ID=TCONS_00020929|Name=TCONS_00020929|organism=Clytia hemisphaerica|type=transcript|length=6236bp|location=Sequence derived from alignment at sc0000374:62777..69012+ (Clytia hemisphaerica)
TTAGAAAATAAAACGCAATTCAAAGTTGGATAAAAAATGGAACCAAAAAT
TATGAGCAACATCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCG
ATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCG
AAACCAAAACCGATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCC
ATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGA
AACCAAGGATTGAtaatatcgggaaatcgggaaatggAGGGATCAGAGTG
AGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGA
GATGATTGTCACCAAAAATGGAAGGTAAAAGAATTAGAATTATTTGAAGC
CACATTTATCATATTCCTTTACACAGTTGAATTTTTTcatgttcttttca
aatttcacggAAAAAACTAACAGTAAATTAATAAGCTCATTCTTACCTTC
ccaacgataccaaactttgaagattgaaaatttagtgcacacttatcgtg
aatagaatTTAGATAAGGTAACTGCTCACAGATTTCTCGtggaagtgtgt
ccagttttgaagtacagttgacgctcttcaATTTGAcgttcgatacgctc
cattattcgataatattgaaagtcactgtcaaAAAGCAACTCTCTTAAAC
Gacactctactattcgatacgctccctcttgatgaaaatcctttgatcct
tgaaaatcgaattagaggaCGCCAACAGTCCGCCGTGTTGTTTACTAATT
TACTTTAGTTTACCGAacgttcaaatttcaaaacatctgATTTGAAAACA
AGAGAACTGGCTAGTTAGCTTAATTTTGGACACGCTTCCTTTTATATGAG
AAGCCCGATCCTGTCAAATTGTTAAGAGATCAGTGATCCAGTCAAATTAT
TAAGAGATCAGTGTTTGAGGCTCATCTTTATGCCTGGATTCAATTGCCAt
ctatattttatctttttaccAATCAACTTCTTCGATCTcattttgaataa
caaactaaacctcttaaaaaaattcagtggatTTCTGAGTTTAGAGAAGA
AATACTTTAGAATAATCTTCAAACATTTCAAACAGTCGATTTTCAATTCC
CCTTTGCATTTAGCTCCTTCGTTTTGGTAAGAATCTCAACGGTTgactga
gacagggatgtgctATTACTCGCGAGCATTCGAGTCATAAAACGGATTGc
aacttcaaaattttcaatttctaatttctgAGTTAAAATCTTCTGTTCTT
TTAATCATATTTAGACGAATGTTTCCAGTACTAAAAACATCCATTCAAGG
ATTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTTGTTCCTGTAG
ATGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAA
CCGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGGACTCACCTAA
CTTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCGAAAGTAAAAC
TTACcaataaagaaaataacaataatcaAGTGGTAAGACTTACACTAAAA
ATCCAtatcctttttgaaaaaaccttCAATTCCTAAATTTCTGCCTGTAA
ACCAGGCCAATACACTGGCGGaattaagacaatagagcaagtacgtcgga
aaaatgctaaggagtgcaacgctcgttaaaaacTGAAATTACAGTTACAa
atctgataagttcgacagggTCTAAAGTCACTTTGTCACCCAGGGAAATT
CAGTTATTGTCTATTATTTGTTGGTTAGTTAACCATGTAACCCATAttat
ataaagaaaaaagtagTATTCGATATTCTCATGCTTTAAAACACCAGGGT
TtggtgaagctatgaatgccatcctcagaagcttaCAGTTACAaatctga
taagttcgacagggTCTAAAGTCACTTTGTAACCCAGGGAAATTCAGTTA
GTACCAAATACTCATGGCACTAAATTGTTTGCGTCGTTCACTCTTCAATT
TAACAAATCAACCTACTCGAAtgaatttcagccaaatcgaatgGGCTAAT
CTCTATATTTGTCTGCAAATCATGTTTATAATTATCCAAACCTACAACtg
attaaaaataccaaatcCTTCCCAGCCCCAGTGCTCGATATTGATTTCAT
GCGATTTCAAAAAGTAATGGATgctaaaaaaaaagtgaaatcaaTGTCTA
ATTTTCAGGTGATGCTGAATTCACTGCACAAATACGAACCACGTATGCAT
GTTTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGGTTTCCACTCACTC
ATTTGAAGAAACAGTTTTTATCGCTGTCACTGCTTACCAAAATGAAGAGG
TGAGTTTGGTATCCTGCAAACTGACCCTGTAAATGCAGGTCAATCACTAT
TTTCACACTTCATGTTGACACTTCATTCTAAATTTCATTTCTCcgtattt
tcaaaacatttttttttttattctgccTTCTTATAGAAGCAACTTATATC
CCATCGATCATAAACTACCTATATGGGTTAGCCACACTTTCTAATACGAG
CTTAGAAATAGAATCTACCGTCAGATAAAAAATATGTTCCACTGCAAAAG
ATTCAATGGTGTATGAATATTACAGTGTACAGTTtcgctttttggaccta
ccgggaggtcctttaatttgaccgttgtctgttcgtctgttacaagcttt
tctcgggattggctcattagttttttttaattttttgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattttggggggcaaattt
gggccaaaaactacctaaaaataaggttttttggactttgtgcaaaattg
cttcattagtttttcctgatttttggcagaaggatagagtgcaaggtacc
ctaaaatgtggctgaagtaatttttctcagaaaattttttttcgtcataa
aattttcaaaaaaagacgaccaagttacacaatgataaaagaaaataaat
cagacgtttttgcattgttctaaaacttattgtgtttgctcaataccaat
agtaaaatATAGAACACCTACTTTTTgatcaacaggtaggtccattcagc
atgttgcttgttcttCAGGGGTTTGAGTATACCGCATTTGTGTCCCCTGT
ATCTctttgtgtcacagacccactgggaccccagccccactggaagattt
agcaaaaatttcgtccccggtggaaaaatatcaaaatatcacAATCATCC
CTACTGGGTTGTTTAACCTTAAAACATAGAATTTCTAACCCcctgaggaa
aaagttccacaggggttgtgagacaggggtgtcactTGGTATCAAGGGGA
GATCTGTCATTAATTATCACATTTAAAATTGTtaacataaaatcaaaaaa
aaaactattaagTAGAAAATCTATCCAAAATCTAAAAAACTCTACCTGCA
GGGTTTTACGATTACACAAGATTGAATGCATGGTTTGggaaagaaaggag
aaaaataaacacttacagtatatggccccaaaacggagacggcccccaaa
acggaggttttcattaaaatgaagattctgacttgtagatttatcagaat
taaacaatttttgtttattttgaaagaatgatggttatacttaaaaatga
gcctgtttttgctggtttgggacagattcaaaataacatatttgcgtcca
aaggaaatattttaacaccaaaattagataaaaattgcatatagctcact
ctagctccttggatattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgttaaaggtttt
catgcagcaaaaatttttgtaaaatctcttttcctctagatttgagagaa
atttcaaatttgatcgccgttttgggggccacatactgtacggAAGACCC
TTGTCATCAAAAAGCTTCCCATataattttagtgtttttgaaaaacattc
ctATGCCAATAGGATTATCTTTCTATGTCATCAAGGTGATAAAAACACGC
AGGCATGTTAAGTAGTCTAGCAGATATGCTGAATTGAAGTTTGCAACATT
CGTAGAGAATGAGACTTATCCTTCAGTGAAGTTTTCCCAGggcctttttt
caaatattgtatTTCCGCCCTAACTAACCCTGTGGCGAAGCTGGTAATTT
CGAcgctgaaaaaaatgaaatccttcaattttttttgttgaaaaacaaTA
AACGTGGAATGAGTAGGCGTGGCTTCTGAGGGTAGCAGAGTCAGACATTT
ATGACAGGTCTCAGAATTGAGCTTATTTTGACGTGCAAAATTCTCTCATT
AATCTGAAGTTTAttaaattagtaaatttgatcTCACGATATTAAGTCAC
TTGTATGATTTAGAGAAATTCTTAAGTGCCTTCTCGTAGGGAGTTTTCAC
TGTGTCTGCTAGATTTGGTATTTTCATGTCACTAATCTGAATTTAAAATC
AGCCGTGtcagatttttattacaaaaatggattttatttttctttaaccc
gACGATATCATTTTAATCTCTGGGGACTCAACGAAAGGAGCTTAAAGGAG
ATTGAAGTCTtgtgtttaaaaattttaggaTATTCTTATCACAGGGGCGT
AAATTTAGGTCAACTTTGCTAGTTGGTAGAGTCCAACCTTCTGTGACACA
GGGTGTATCATGTATTATGTACAAGACGTCCACGAATTTTAGACAAATTG
GCAAAGCAATTATTATTTTCCTGGTGTGAATACAAAAAATTCTAGACAAG
GCATCGACAGTTGTGAAGCAAAGataaattaaaatcaataaatctCTCCT
ATCTTCCTAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAAG
CTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAATCCACCCA
AGACGTTTTGAATTTCCTTGCATACCACCACCAACGGTCGGGGGTCCAGG
AGCCCTATGTAGATGCAGCTTAGATGGATACCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020929-exon-sc0000374-1491911889:62777..63150 | TCONS_00020929-exon-sc0000374-1491911889:62777..63150 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1510915933:62777..63150 | TCONS_00020929-exon-sc0000374-1510915933:62777..63150 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1575043694:62777..63150 | TCONS_00020929-exon-sc0000374-1575043694:62777..63150 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1491911889:64091..64358 | TCONS_00020929-exon-sc0000374-1491911889:64091..64358 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1510915933:64091..64358 | TCONS_00020929-exon-sc0000374-1510915933:64091..64358 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1575043694:64091..64358 | TCONS_00020929-exon-sc0000374-1575043694:64091..64358 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1491911889:65035..65175 | TCONS_00020929-exon-sc0000374-1491911889:65035..65175 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1510915933:65035..65175 | TCONS_00020929-exon-sc0000374-1510915933:65035..65175 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1575043694:65035..65175 | TCONS_00020929-exon-sc0000374-1575043694:65035..65175 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1491911889:68837..69012 | TCONS_00020929-exon-sc0000374-1491911889:68837..69012 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1510915933:68837..69012 | TCONS_00020929-exon-sc0000374-1510915933:68837..69012 | Clytia hemisphaerica | exon |
| TCONS_00020929-exon-sc0000374-1575043694:68837..69012 | TCONS_00020929-exon-sc0000374-1575043694:68837..69012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:62777..69012 + |
Blast
BLAST of TCONS_00020929 vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 7.098e-92 Identity = 133/189 (70.37%), Postives = 155/189 (82.01%), Query Frame = 1
Query: 292 IRVRLDEMGLWKSFHQLTNEMIVTKNGRRMFPVLKTSIQGLDPNAMYSIMLDFVPVDEHRWKFVNGEWSRGGKPEPTSSSRVYVHPDSPNFGAHWMKNSIVFSKVKLTNKENNNNQVVMLNSLHKYEPRMHVLKVGSKESERTVSTHSFEETVFIAVTAYQNEEITSLKIKYNPFAKAFLDAKERSEQQ 858
+RV L+E LW F +LTNEMIVTKNGRRMFPVLK ++ GLDPNAMYS +LDFV D HRWK+VNGEW GGKPEP + S VY+HPDSPNFGAHWMK + FSKVKLTNK N Q +MLNSLHKYEPR+H+++VG +R +++H F ET FIAVTAYQNEEIT+LKIKYNPFAKAFLDAKERS+ +
Sbjct: 42 LRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQ-IMLNSLHKYEPRIHIVRVGGP--QRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHK 227
The following BLAST results are available for this feature:
|
