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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020923 ID=TCONS_00020923|Name=TCONS_00020923|organism=Clytia hemisphaerica|type=transcript|length=820bp
GTTCGCACATTCCCTTATCTGCCAACCCTAGTACTCCCTCTGGGGGTAAG
TTTTGGCGTTTTTTTGCTAACACATCCTAATGTTATGAACTGCTGTGCTT
ACAAGAGGAACATACTTTTTTCGTAGAAAAAATGTCGTCTTTTCGTTCTG
TTTCTCCTGGCAAGAAAGGTGGAAAATGGAGTGGGAAACTTTACTTTGAT
TCAGACGCATCTGGCAAGAGCGATGATACTGCTGGTTACTACATAACGGA
TGAGAAACTTCAAGTTACATTAAAACATTTGATCAGAACCGATGAAAAGA
TCAATCATGTTTGGATTTATACAACTCCTTTATTTAAAAACCAATGGAGT
CATGTTATCATGTATCATGCTTATGTTGTTATGGAAACAAATACACATTG
GTGGTCCCTTGAAAAGAATTCAGAGAATTTGGTCCTACAACGCAGTAAAA
CGCTTGAATACGTTAAGGATTATTGTCAAGGAAAAAagagaaatgttttg
aaaaacaaatctGAACCTGAACTCTGGAAACACCGGGAGAGCGATTTCTC
TTTATTACAGCTCTTTCAAAACTTATGGCAAAAGGATGAACTCAACAGTA
ATTTTGACTTGATGATGCGTAATTGCCAAGGGTTTGCAAGAAGAATATTC
AATTCTTGCtctatttcaaagaaaaagtacCCCATTGATTGTTTTGATCC
TTCCGAGCTCGCATCGAAACAAACAGAACTAAAAGTGATACCTCTAATGG
GAGCTTAACCTTTAATAAAGCtataataaaagttttgttttatatatttt
accaaGCATACATGTTCATT Run BLAST on NCBI protein sequence of TCONS_00020923-protein >TCONS_00020923-protein ID=TCONS_00020923-protein|Name=TCONS_00020923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MSSFRSVSPGKKGGKWSGKLYFDSDASGKSDDTAGYYITDEKLQVTLKHL
IRTDEKINHVWIYTTPLFKNQWSHVIMYHAYVVMETNTHWWSLEKNSENL
VLQRSKTLEYVKDYCQGKKRNVLKNKSEPELWKHRESDFSLLQLFQNLWQ
KDELNSNFDLMMRNCQGFARRIFNSCSISKKKYPIDCFDPSELASKQTEL
KVIPLMGA Run BLAST on NCBI transcript from alignment at sc0000373:159221..160040 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020923 ID=TCONS_00020923|Name=TCONS_00020923|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0000373:159221..160040 (Clytia hemisphaerica)
AATGAACATGTATGCttggtaaaatatataaaacaaaacttttattataG
CTTTATTAAAGGTTAAGCTCCCATTAGAGGTATCACTTTTAGTTCTGTTT
GTTTCGATGCGAGCTCGGAAGGATCAAAACAATCAATGGGgtactttttc
tttgaaatagaGCAAGAATTGAATATTCTTCTTGCAAACCCTTGGCAATT
ACGCATCATCAAGTCAAAATTACTGTTGAGTTCATCCTTTTGCCATAAGT
TTTGAAAGAGCTGTAATAAAGAGAAATCGCTCTCCCGGTGTTTCCAGAGT
TCAGGTTCagatttgtttttcaaaacatttctctTTTTTCCTTGACAATA
ATCCTTAACGTATTCAAGCGTTTTACTGCGTTGTAGGACCAAATTCTCTG
AATTCTTTTCAAGGGACCACCAATGTGTATTTGTTTCCATAACAACATAA
GCATGATACATGATAACATGACTCCATTGGTTTTTAAATAAAGGAGTTGT
ATAAATCCAAACATGATTGATCTTTTCATCGGTTCTGATCAAATGTTTTA
ATGTAACTTGAAGTTTCTCATCCGTTATGTAGTAACCAGCAGTATCATCG
CTCTTGCCAGATGCGTCTGAATCAAAGTAAAGTTTCCCACTCCATTTTCC
ACCTTTCTTGCCAGGAGAAACAGAACGAAAAGACGACATTTTTTCTACGA
AAAAAGTATGTTCCTCTTGTAAGCACAGCAGTTCATAACATTAGGATGTG
TTAGCAAAAAAACGCCAAAACTTACCCCCAGAGGGAGTACTAGGGTTGGC
AGATAAGGGAATGTGCGAAC Coding sequence (CDS) from alignment at sc0000373:159221..160040 >TCONS_00020923 ID=TCONS_00020923|Name=TCONS_00020923|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000373:159221..160040 (Clytia hemisphaerica)
TTAAGCTCCCATTAGAGGTATCACTTTTAGTTCTGTTTGTTTCGATGCGA
GCTCGGAAGGATCAAAACAATCAATGGGgtactttttctttgaaatagaG
CAAGAATTGAATATTCTTCTTGCAAACCCTTGGCAATTACGCATCATCAA
GTCAAAATTACTGTTGAGTTCATCCTTTTGCCATAAGTTTTGAAAGAGCT
GTAATAAAGAGAAATCGCTCTCCCGGTGTTTCCAGAGTTCAGGTTCagat
ttgtttttcaaaacatttctctTTTTTCCTTGACAATAATCCTTAACGTA
TTCAAGCGTTTTACTGCGTTGTAGGACCAAATTCTCTGAATTCTTTTCAA
GGGACCACCAATGTGTATTTGTTTCCATAACAACATAAGCATGATACATG
ATAACATGACTCCATTGGTTTTTAAATAAAGGAGTTGTATAAATCCAAAC
ATGATTGATCTTTTCATCGGTTCTGATCAAATGTTTTAATGTAACTTGAA
GTTTCTCATCCGTTATGTAGTAACCAGCAGTATCATCGCTCTTGCCAGAT
GCGTCTGAATCAAAGTAAAGTTTCCCACTCCATTTTCCACCTTTCTTGCC
AGGAGAAACAGAACGAAAAGACGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020923-exon-sc0000373-1491911889:159221..160040 | TCONS_00020923-exon-sc0000373-1491911889:159221..160040 | Clytia hemisphaerica | exon |
| TCONS_00020923-exon-sc0000373-1510915933:159221..160040 | TCONS_00020923-exon-sc0000373-1510915933:159221..160040 | Clytia hemisphaerica | exon |
| TCONS_00020923-exon-sc0000373-1575043694:159221..160040 | TCONS_00020923-exon-sc0000373-1575043694:159221..160040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:159221..160040 . |
Blast
The following BLAST results are available for this feature:
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