TCONS_00020921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020921
Unique NameTCONS_00020921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020921 ID=TCONS_00020921|Name=TCONS_00020921|organism=Clytia hemisphaerica|type=transcript|length=731bp
ACATTTTCACACGCGCTTTATGAATACTATCTTCTCTCCTTAGAAATGCA
GTATCTTATCGAATATATTGTTTTATCTCTGTTACTAAATATTGTTGTTG
CAACTGCCAAAGATGGTTTTGGTTTATGATGAAAAGGCTAGTGAACAGTT
TTGGTTTGAAGGAGATAAAGACTTCATGGTAAATGACTTTTTCCAAAGAA
AGATAGATCAAGTTCGCGATTTTGACCGAATTGATAGAATGTTTCATCAA
AAAACTAACGCCAAAGATAACATGATTCAACAAGACTTTTATGGATTTGA
TGGAGAACTTAATGACTTTGGTAATCGTAAAATTATTCCACAGCCTGATC
ACAACATTGATGAACTTTATAGTGATCCTAGTTGGTCAGATTGCAAACGA
AAATGCGATGGAACGCATCAACTTTGTTCATCAGCAGTTCAAAGTCCATT
TGGAAAATGGAGATGTAATATTGCGAGATTGAGGTGCAGAAAATCTTGCC
ATAATGCTCCTCATCTTtaggatttttttataaaatttctttacGGTACA
GCGTTTAAGGACCGATCTCAAAAATAAGGCTTTAGTCATTTTAGTCATTA
TATTTATTTAGGGACTTGTTTCTTTTTTAATCCACATTAACATATCCATC
AATATaatgaatatattttcaacaagcacaaaacctcCAAATTCAAATTC
TATTAAAAACTAAAGTCTTTTTTGATTCAGc
Run BLAST on NCBI

protein sequence of TCONS_00020921-protein

>TCONS_00020921-protein ID=TCONS_00020921-protein|Name=TCONS_00020921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MVLVYDEKASEQFWFEGDKDFMVNDFFQRKIDQVRDFDRIDRMFHQKTNA
KDNMIQQDFYGFDGELNDFGNRKIIPQPDHNIDELYSDPSWSDCKRKCDG
THQLCSSAVQSPFGKWRCNIARLRCRKSCHNAPHL
Run BLAST on NCBI

transcript from alignment at sc0000373:127901..128631

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020921 ID=TCONS_00020921|Name=TCONS_00020921|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0000373:127901..128631 (Clytia hemisphaerica)
gCTGAATCAAAAAAGACTTTAGTTTTTAATAGAATTTGAATTTGgaggtt
ttgtgcttgttgaaaatatattcattATATTGATGGATATGTTAATGTGG
ATTAAAAAAGAAACAAGTCCCTAAATAAATATAATGACTAAAATGACTAA
AGCCTTATTTTTGAGATCGGTCCTTAAACGCTGTACCgtaaagaaatttt
ataaaaaaatcctaAAGATGAGGAGCATTATGGCAAGATTTTCTGCACCT
CAATCTCGCAATATTACATCTCCATTTTCCAAATGGACTTTGAACTGCTG
ATGAACAAAGTTGATGCGTTCCATCGCATTTTCGTTTGCAATCTGACCAA
CTAGGATCACTATAAAGTTCATCAATGTTGTGATCAGGCTGTGGAATAAT
TTTACGATTACCAAAGTCATTAAGTTCTCCATCAAATCCATAAAAGTCTT
GTTGAATCATGTTATCTTTGGCGTTAGTTTTTTGATGAAACATTCTATCA
ATTCGGTCAAAATCGCGAACTTGATCTATCTTTCTTTGGAAAAAGTCATT
TACCATGAAGTCTTTATCTCCTTCAAACCAAAACTGTTCACTAGCCTTTT
CATCATAAACCAAAACCATCTTTGGCAGTTGCAACAACAATATTTAGTAA
CAGAGATAAAACAATATATTCGATAAGATACTGCATTTCTAAGGAGAGAA
GATAGTATTCATAAAGCGCGTGTGAAAATGT

Coding sequence (CDS) from alignment at sc0000373:127901..128631

>TCONS_00020921 ID=TCONS_00020921|Name=TCONS_00020921|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000373:127901..128631 (Clytia hemisphaerica)
ctaAAGATGAGGAGCATTATGGCAAGATTTTCTGCACCTCAATCTCGCAA
TATTACATCTCCATTTTCCAAATGGACTTTGAACTGCTGATGAACAAAGT
TGATGCGTTCCATCGCATTTTCGTTTGCAATCTGACCAACTAGGATCACT
ATAAAGTTCATCAATGTTGTGATCAGGCTGTGGAATAATTTTACGATTAC
CAAAGTCATTAAGTTCTCCATCAAATCCATAAAAGTCTTGTTGAATCATG
TTATCTTTGGCGTTAGTTTTTTGATGAAACATTCTATCAATTCGGTCAAA
ATCGCGAACTTGATCTATCTTTCTTTGGAAAAAGTCATTTACCATGAAGT
CTTTATCTCCTTCAAACCAAAACTGTTCACTAGCCTTTTCATCATAAACC
AAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011735XLOC_011735Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020921-proteinTCONS_00020921-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020921-exon-sc0000373-1491911889:127901..128631TCONS_00020921-exon-sc0000373-1491911889:127901..128631Clytia hemisphaericaexon
TCONS_00020921-exon-sc0000373-1510915933:127901..128631TCONS_00020921-exon-sc0000373-1510915933:127901..128631Clytia hemisphaericaexon
TCONS_00020921-exon-sc0000373-1575043694:127901..128631TCONS_00020921-exon-sc0000373-1575043694:127901..128631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:127901..128631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24285	2.58479	2.23165	1.20459	0.458273	0.362134	0.262139	0.245412	0.515455	0.283767	0.550861	0.226322	1.62725	1.26744	9.14649	8.78019	0.102042	0.62754	0.216745	0.529219	0.26285	0.0961567	1.79233	1.27525	0.218913	0.846624	0.559161	0.0994587	0.905231	0.614858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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