TCONS_00020920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020920
Unique NameTCONS_00020920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020920 ID=TCONS_00020920|Name=TCONS_00020920|organism=Clytia hemisphaerica|type=transcript|length=250bp
TATTGAtgtgttttttacaaaaaatatttctatttatCAAAATTAAGTAA
TATAGATATAGTAGATATACTagtaaatttttcacaaaaataaatttgtc
tgAAATGTTCCCGAATCTAATGAGAATAATGTCCCCTTTCAATTGTCTTT
TCCAATATAAAggttcattttctaatttttgtcttttcaaAACCAGTCAT
GGCTTGTTTTGCTGCACTTTTTCTTTGCTGTGGCCTGGTGATGCAAAGTA
Run BLAST on NCBI

transcript from alignment at sc0000373:115905..116154

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020920 ID=TCONS_00020920|Name=TCONS_00020920|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at sc0000373:115905..116154 (Clytia hemisphaerica)
TACTTTGCATCACCAGGCCACAGCAAAGAAAAAGTGCAGCAAAACAAGCC
ATGACTGGTTttgaaaagacaaaaattagaaaatgaaccTTTATATTGGA
AAAGACAATTGAAAGGGGACATTATTCTCATTAGATTCGGGAACATTTca
gacaaatttatttttgtgaaaaatttactAGTATATCTACTATATCTATA
TTACTTAATTTTGataaatagaaatattttttgtaaaaaacacaTCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011734XLOC_011734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020920-exon-sc0000373-1491911889:115905..116154TCONS_00020920-exon-sc0000373-1491911889:115905..116154Clytia hemisphaericaexon
TCONS_00020920-exon-sc0000373-1510915933:115905..116154TCONS_00020920-exon-sc0000373-1510915933:115905..116154Clytia hemisphaericaexon
TCONS_00020920-exon-sc0000373-1575043694:115905..116154TCONS_00020920-exon-sc0000373-1575043694:115905..116154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:115905..116154 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	9.85604	5.53626	6.46012	2.40057	3.10673	2.04224	10.197	13.2371	9.5768	22.4234	17.2648	11.7973	0	0	3.70603	4.33842	6.1529	4.79475	2.46924	0.73458	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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