TCONS_00020918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020918
Unique NameTCONS_00020918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020918 ID=TCONS_00020918|Name=TCONS_00020918|organism=Clytia hemisphaerica|type=transcript|length=1558bp
TTTCATGATAAAACATacaatttattaaaaaatttatacttttcaatttc
acaattttACTGCCTTTAGTTTGGTAACACTGATTACTATTACTtacaaa
ttaattaaaaatgtaTACTAATCATTAGTTAATTATCATCATTTGTCAAA
AACATAAtactcaaaactcaaaattaacATTGTTAATGTATACTCCATCT
CTGGTGATACAGAATATTCGATCCTATTCATGAGGAGGAGTTAATAAACT
TATATCTCGTCTTCCTCTTCCACTGCAACTGGTACTCGATGAAGCCAAAC
CATCCTGCAGATCGGATAAATCACTGAAACGTCTTATATTGATGATATCA
TGTTTCGGTGAATCTCCTATATCTACGCTTTTATAAAAGGACGGGTTTTC
CGGCGCCATGACTGAACGACGTCGAATCGAAACTTCTGGAGTGATATTAT
GATCTTGGTTTAATCCGGCAATTCTATCTATATTGTCCCCTACGTGCGGC
TCTGTGACGCCACTACTTGTCACTTGTAAGGGTAACACTTTACCATTTCT
TTTACGATGGATGGAGACGGTGCACAACAGATCGTAAAATGCACGACGAA
ATTTCTTACTCATGCCAGCATAAATCCAAAAATTACACATTGAATTTGTA
TATGCGAGAAAAAGAGCTGCAAAACTGAATGCGGGTGACGTTTTGGTGTC
GGTAAGACCTTCTAAGTAAATGATAATGGCATACGGTGTATAGAGCGAGA
AAAACACAACAACAACAGTCAATAAACAGATCGATAGAGAAATGTCTCTC
GTGTTCAATCTCAAATTATGCCGATCCGATGATGCTCGTAACCGTTTACG
AGACGCGTAACTGTGCGTAAATACTTTATAGTAGCTGAAAACCATAATAC
CTAGAGGTATTGGAAATCCACATAGTtggataaaaaataaataactttta
cTGTACGCCCAATCCACCATACAGTGCATACGCCCTGAATTGTAACTAAT
TTTTCCCCACCCAAAAAAGGGCGGTAAGCAAACGGCGATACCAAAAATCC
ATATACTAGAAACATAGATTGCAAGTTTAGAAGAGGTGAACAAACGCTTG
TGGTACCCGTTTAAAACAACCAGGATATAGCGATGAAATGCAATTAAAGC
AAGGTTGAAATTCGAAACTAGGAATGGAACTAGAATAAAAACACCAGTGA
ATGTACAGCATATTCCGTCTTTGATAGGTGTAGCCACGAGGTTTGAGATA
TTGATGGTTGTACCAAATACAATAATTAACCAATCACAAACAGCAAGACT
TGCCAGTAGAAAGTTAGTCTTGGTGTGAAGTTTCTTGGTGAATCCGAGAA
CTAAGAATAACAATGTGTTTGAAATGAGAGAAACGAGACCAATGATAGAA
TATAACGTGATTTGGATGTTACGGTTTGGTACCAAGTGATCATAATCGCT
GACGGTTGTTGAtgatgaatttttcattttttaccgcATTGTTGGTAGGA
TTAAGGTTGCTATTGTCTGTAACGTTTTAGATTTTCTGAAAACAAGATTA
TCTGATAA
Run BLAST on NCBI

protein sequence of TCONS_00020918-protein

>TCONS_00020918-protein ID=TCONS_00020918-protein|Name=TCONS_00020918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MKNSSSTTVSDYDHLVPNRNIQITLYSIIGLVSLISNTLLFLVLGFTKKL
HTKTNFLLASLAVCDWLIIVFGTTINISNLVATPIKDGICCTFTGVFILV
PFLVSNFNLALIAFHRYILVVLNGYHKRLFTSSKLAIYVSSIWIFGIAVC
LPPFFGWGKISYNSGRMHCMVDWAYSKSYLFFIQLCGFPIPLGIMVFSYY
KVFTHSYASRKRLRASSDRHNLRLNTRDISLSICLLTVVVVFFSLYTPYA
IIIYLEGLTDTKTSPAFSFAALFLAYTNSMCNFWIYAGMSKKFRRAFYDL
LCTVSIHRKRNGKVLPLQVTSSGVTEPHVGDNIDRIAGLNQDHNITPEVS
IRRRSVMAPENPSFYKSVDIGDSPKHDIINIRRFSDLSDLQDGLASSSTS
CSGRGRRDISLLTPPHE
Run BLAST on NCBI

transcript from alignment at sc0000373:75249..76806

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020918 ID=TCONS_00020918|Name=TCONS_00020918|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at sc0000373:75249..76806 (Clytia hemisphaerica)
TTATCAGATAATCTTGTTTTCAGAAAATCTAAAACGTTACAGACAATAGC
AACCTTAATCCTACCAACAATgcggtaaaaaatgaaaaattcatcaTCAA
CAACCGTCAGCGATTATGATCACTTGGTACCAAACCGTAACATCCAAATC
ACGTTATATTCTATCATTGGTCTCGTTTCTCTCATTTCAAACACATTGTT
ATTCTTAGTTCTCGGATTCACCAAGAAACTTCACACCAAGACTAACTTTC
TACTGGCAAGTCTTGCTGTTTGTGATTGGTTAATTATTGTATTTGGTACA
ACCATCAATATCTCAAACCTCGTGGCTACACCTATCAAAGACGGAATATG
CTGTACATTCACTGGTGTTTTTATTCTAGTTCCATTCCTAGTTTCGAATT
TCAACCTTGCTTTAATTGCATTTCATCGCTATATCCTGGTTGTTTTAAAC
GGGTACCACAAGCGTTTGTTCACCTCTTCTAAACTTGCAATCTATGTTTC
TAGTATATGGATTTTTGGTATCGCCGTTTGCTTACCGCCCTTTTTTGGGT
GGGGAAAAATTAGTTACAATTCAGGGCGTATGCACTGTATGGTGGATTGG
GCGTACAgtaaaagttatttattttttatccaACTATGTGGATTTCCAAT
ACCTCTAGGTATTATGGTTTTCAGCTACTATAAAGTATTTACGCACAGTT
ACGCGTCTCGTAAACGGTTACGAGCATCATCGGATCGGCATAATTTGAGA
TTGAACACGAGAGACATTTCTCTATCGATCTGTTTATTGACTGTTGTTGT
TGTGTTTTTCTCGCTCTATACACCGTATGCCATTATCATTTACTTAGAAG
GTCTTACCGACACCAAAACGTCACCCGCATTCAGTTTTGCAGCTCTTTTT
CTCGCATATACAAATTCAATGTGTAATTTTTGGATTTATGCTGGCATGAG
TAAGAAATTTCGTCGTGCATTTTACGATCTGTTGTGCACCGTCTCCATCC
ATCGTAAAAGAAATGGTAAAGTGTTACCCTTACAAGTGACAAGTAGTGGC
GTCACAGAGCCGCACGTAGGGGACAATATAGATAGAATTGCCGGATTAAA
CCAAGATCATAATATCACTCCAGAAGTTTCGATTCGACGTCGTTCAGTCA
TGGCGCCGGAAAACCCGTCCTTTTATAAAAGCGTAGATATAGGAGATTCA
CCGAAACATGATATCATCAATATAAGACGTTTCAGTGATTTATCCGATCT
GCAGGATGGTTTGGCTTCATCGAGTACCAGTTGCAGTGGAAGAGGAAGAC
GAGATATAAGTTTATTAACTCCTCCTCATGAATAGGATCGAATATTCTGT
ATCACCAGAGATGGAGTATACATTAACAATgttaattttgagttttgagt
aTTATGTTTTTGACAAATGATGATAATTAACTAATGATTAGTAtacattt
ttaattaatttgtaAGTAATAGTAATCAGTGTTACCAAACTAAAGGCAGT
aaaattgtgaaattgaaaagtataaattttttaataaattgtATGTTTTA
TCATGAAA

Coding sequence (CDS) from alignment at sc0000373:75249..76806

>TCONS_00020918 ID=TCONS_00020918|Name=TCONS_00020918|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at sc0000373:75249..76806 (Clytia hemisphaerica)
atgaaaaattcatcaTCAACAACCGTCAGCGATTATGATCACTTGGTACC
AAACCGTAACATCCAAATCACGTTATATTCTATCATTGGTCTCGTTTCTC
TCATTTCAAACACATTGTTATTCTTAGTTCTCGGATTCACCAAGAAACTT
CACACCAAGACTAACTTTCTACTGGCAAGTCTTGCTGTTTGTGATTGGTT
AATTATTGTATTTGGTACAACCATCAATATCTCAAACCTCGTGGCTACAC
CTATCAAAGACGGAATATGCTGTACATTCACTGGTGTTTTTATTCTAGTT
CCATTCCTAGTTTCGAATTTCAACCTTGCTTTAATTGCATTTCATCGCTA
TATCCTGGTTGTTTTAAACGGGTACCACAAGCGTTTGTTCACCTCTTCTA
AACTTGCAATCTATGTTTCTAGTATATGGATTTTTGGTATCGCCGTTTGC
TTACCGCCCTTTTTTGGGTGGGGAAAAATTAGTTACAATTCAGGGCGTAT
GCACTGTATGGTGGATTGGGCGTACAgtaaaagttatttattttttatcc
aACTATGTGGATTTCCAATACCTCTAGGTATTATGGTTTTCAGCTACTAT
AAAGTATTTACGCACAGTTACGCGTCTCGTAAACGGTTACGAGCATCATC
GGATCGGCATAATTTGAGATTGAACACGAGAGACATTTCTCTATCGATCT
GTTTATTGACTGTTGTTGTTGTGTTTTTCTCGCTCTATACACCGTATGCC
ATTATCATTTACTTAGAAGGTCTTACCGACACCAAAACGTCACCCGCATT
CAGTTTTGCAGCTCTTTTTCTCGCATATACAAATTCAATGTGTAATTTTT
GGATTTATGCTGGCATGAGTAAGAAATTTCGTCGTGCATTTTACGATCTG
TTGTGCACCGTCTCCATCCATCGTAAAAGAAATGGTAAAGTGTTACCCTT
ACAAGTGACAAGTAGTGGCGTCACAGAGCCGCACGTAGGGGACAATATAG
ATAGAATTGCCGGATTAAACCAAGATCATAATATCACTCCAGAAGTTTCG
ATTCGACGTCGTTCAGTCATGGCGCCGGAAAACCCGTCCTTTTATAAAAG
CGTAGATATAGGAGATTCACCGAAACATGATATCATCAATATAAGACGTT
TCAGTGATTTATCCGATCTGCAGGATGGTTTGGCTTCATCGAGTACCAGT
TGCAGTGGAAGAGGAAGACGAGATATAAGTTTATTAACTCCTCCTCATGA
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011732XLOC_011732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020918-proteinTCONS_00020918-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020918-exon-sc0000373-1491911889:75249..76806TCONS_00020918-exon-sc0000373-1491911889:75249..76806Clytia hemisphaericaexon
TCONS_00020918-exon-sc0000373-1510915933:75249..76806TCONS_00020918-exon-sc0000373-1510915933:75249..76806Clytia hemisphaericaexon
TCONS_00020918-exon-sc0000373-1575043694:75249..76806TCONS_00020918-exon-sc0000373-1575043694:75249..76806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:75249..76806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5504	4.92402	2.5013	2.09754	0.354661	0.392361	5.64659	6.04597	7.09181	5.73728	5.19572	5.20201	3.84798	3.05162	3.22566	4.95205	1.48071	1.1332	0.391394	0.702113	0.661119	0.855787	1.29663	1.17883	0.423546	0.478806	2.12763	0.615774	0.262711	0.327142
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00020918 vs. Swiss-Prot (Human)
Match: OPSX (Visual pigment-like receptor peropsin OS=Homo sapiens GN=RRH PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.752e-16
Identity = 80/329 (24.32%), Postives = 147/329 (44.68%), Query Frame = -1 
Query:  512 KNSSSTTVSDYDHLVPNRNIQITLYSIIGLVSLISNTLLFLVLGFTKKLHTKTNFLLASLAVCDWLIIVFGTTINISNLVATPIKDGI--CCTFTGVFILVPFLVSNFNLALIAFHRYILVVLNGYHKRLFTSSKLAIYVSSIWIFGIAVCLPPFFGWGKISYNSGRMHCMVDWAYSK----SYLFFIQLCGFPIPLGIMVFSYYKVFTHSYASRKRLRASSDRHNLRLNTRD-ISLSICLLTVVVVFFSLYTPYAIIIYLEGLTDTKT-SPXXXXXXXXXAYTNSMCNFWIYAGMSKKFRRAFYDLLCTVSIHRKRNGKVLPLQVTSS 1474
            KN   +  S  +H     NI  T   + G++S+ISN ++  +    K+L T TN ++ +LAV D  +   G  ++ ++ +    K G   C  + G+ I    + S   L ++A  RY+ + L    +R+ T++ + + + + WI G+   L P  GW   + +     C ++W  +     SY   +    F +PL +M + YY    H   S K    S    +L  +  D I ++   + ++ +F   ++PY+I+       D K   P  +  A   A +++  N  IY   +KKFRRA   +    +        +LP+ V+ +
Sbjct:   13 KNEDGSVFSQTEH-----NIVATYLIMAGMISIISNIIVLGIFIKYKELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFG-MASIGLLTVVAVDRYLTICLPDVGRRMTTNTYIGLILGA-WINGLFWALMPIIGWASYAPDPTGATCTINWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYY----HVTLSIKHHTTSDCTESLNRDWSDQIDVTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSSTFYNPCIYVVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQN 330
The following BLAST results are available for this feature:
BLAST of TCONS_00020918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OPSX6.752e-1624.32Visual pigment-like receptor peropsin OS=Homo sapi... [more]
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