TCONS_00020914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020914
Unique NameTCONS_00020914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020914 ID=TCONS_00020914|Name=TCONS_00020914|organism=Clytia hemisphaerica|type=transcript|length=523bp
AAAATCTTTCTGTATATTAAGTAGGAGTATGTTAAGTAGATGAGAACAGT
TGATAGATTGTATATATAAAATCACCATGCCTACCTTCATCATGGCTCTT
GAGGAGTGAAGCTCTTGttgtttttgataaaagtttgatTTGATCTAATT
TTGATTACAAAGGATTAATTTAATCTACGTTGTATATGTTGGTTGATTAT
AATTTATTAATCTCTTTCTGAGCCAGCCCAATTTGCACGTTGAAAGGATA
AGCCCTGCTAAAATTGGCGACGAGTACGTGCTACTGGAGTTTGAAAATTA
ACCCTAACAAAAACCAATTTTAAAGAACAGCATTGCGCCGGAATTTGGCC
TCTTACAAATGTGTCAGACTTAAAATATGCAATTCTATTACCCAAAATGC
TAGACAACTCTTACTCCCAAAAGCTAGATATTTGTAATGATATAATCTGC
TTAACATCAGGATTTGCTTTCTCCATCTTCAATTCTTTGAACAATTTGCT
CGTCCTTATACCTATCATTTTGC
Run BLAST on NCBI

transcript from alignment at sc0000373:36327..36849

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020914 ID=TCONS_00020914|Name=TCONS_00020914|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000373:36327..36849 (Clytia hemisphaerica)
GCAAAATGATAGGTATAAGGACGAGCAAATTGTTCAAAGAATTGAAGATG
GAGAAAGCAAATCCTGATGTTAAGCAGATTATATCATTACAAATATCTAG
CTTTTGGGAGTAAGAGTTGTCTAGCATTTTGGGTAATAGAATTGCATATT
TTAAGTCTGACACATTTGTAAGAGGCCAAATTCCGGCGCAATGCTGTTCT
TTAAAATTGGTTTTTGTTAGGGTTAATTTTCAAACTCCAGTAGCACGTAC
TCGTCGCCAATTTTAGCAGGGCTTATCCTTTCAACGTGCAAATTGGGCTG
GCTCAGAAAGAGATTAATAAATTATAATCAACCAACATATACAACGTAGA
TTAAATTAATCCTTTGTAATCAAAATTAGATCAAatcaaacttttatcaa
aaacaaCAAGAGCTTCACTCCTCAAGAGCCATGATGAAGGTAGGCATGGT
GATTTTATATATACAATCTATCAACTGTTCTCATCTACTTAACATACTCC
TACTTAATATACAGAAAGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011728XLOC_011728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020914-exon-sc0000373-1491911889:36327..36849TCONS_00020914-exon-sc0000373-1491911889:36327..36849Clytia hemisphaericaexon
TCONS_00020914-exon-sc0000373-1510915933:36327..36849TCONS_00020914-exon-sc0000373-1510915933:36327..36849Clytia hemisphaericaexon
TCONS_00020914-exon-sc0000373-1575043694:36327..36849TCONS_00020914-exon-sc0000373-1575043694:36327..36849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:36327..36849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.150287	0.234113	0	0	0.508911	0.869362	3.60321	6.7869	0.983175	0.479558	0.64774	0.353334	1.69832	0.974385	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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