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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020902 ID=TCONS_00020902|Name=TCONS_00020902|organism=Clytia hemisphaerica|type=transcript|length=2074bpRun BLAST on NCBI transcript from alignment at sc0000373:184195..245819- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020902 ID=TCONS_00020902|Name=TCONS_00020902|organism=Clytia hemisphaerica|type=transcript|length=61625bp|location=Sequence derived from alignment at sc0000373:184195..245819- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020902 vs. Swiss-Prot (Human)
Match: ACO11 (Acyl-coenzyme A thioesterase 11 OS=Homo sapiens GN=ACOT11 PE=1 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 1.252e-70 Identity = 149/377 (39.52%), Postives = 207/377 (54.91%), Query Frame = 1
Query: 22 PKTEEEKSLFALANERKKMRLDYRSSLKRLKDNKEELQSKFVADETSDKNSHVTSDNTYSECVEIVLPQHANHHQTTFGGQLMAWMEQTCSISARRLCHGHPRLLTVDEVFFRAPSKVGDRIVIKSRVNHIFDRCMEVGARVEAYAVGGET--RHIQSAFFTFIAPDEKGNPKVLPNMKPMNKDDFYRMKRAEARVKLRSERRMILGNDGLN---AVSLNEKNQKILCYKNILELMALYNKDTFKFKLEMAPVRLSQLKIDDSLCIRLETEVDFSAADVYRALSDHTKRIHWDMFITEVEILKEIKKSEDHVLRYKMSNLKPGCNTKGDDIIVLASCRQEKDYA---IIAYRSVKLDEFPPVPEYHRAINRCSGFII 1128
P+TEEEK ++A ER++MRL Y ++K L N +Q E+ D + V ++ T E VE+VLP HANH TFGGQ+MAWME +I+A RLC HP L ++ FR PS+VGDR+V+K+ VN+ F MEVG VEAY ET RHI SAF TF+ D P++LP ++P D R + A AR K+R +R+ I+ +V + NQ L Y N+ L L KD + E++ VRL L+ D L +E V AA + LSD +R WD VE+++++ ED + Y +++ G +TK D ++LAS R+ D +IA RSV L PEY R CSGF +
Sbjct: 165 PRTEEEKMEHSVAAERRRMRLVYADTIKDLLANCA-IQGDL---ESRDCSRMVPAEKTRVESVELVLPPHANHQGNTFGGQIMAWMENVATIAASRLCRAHPTLKAIEMFHFRGPSQVGDRLVLKAIVNNAFKHSMEVGVCVEAYRQEAETHRRHINSAFMTFVVLDADDQPQLLPWIRPQPGDGERRYREASARKKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQV--DEDDAI-YHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCL 534 The following BLAST results are available for this feature:
BLAST of TCONS_00020902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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