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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020901 ID=TCONS_00020901|Name=TCONS_00020901|organism=Clytia hemisphaerica|type=transcript|length=2067bpRun BLAST on NCBI transcript from alignment at sc0000373:184195..245817- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020901 ID=TCONS_00020901|Name=TCONS_00020901|organism=Clytia hemisphaerica|type=transcript|length=61623bp|location=Sequence derived from alignment at sc0000373:184195..245817- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00020901 vs. Swiss-Prot (Human)
Match: ACO11 (Acyl-coenzyme A thioesterase 11 OS=Homo sapiens GN=ACOT11 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.732e-58 Identity = 113/297 (38.05%), Postives = 159/297 (53.54%), Query Frame = 3
Query: 255 ELMAWMEQTCSISARRLCHGHPRLLTVDEVFFRAPSKVGDRIVIKSRVNHIFDRCMEVGARVEAYAVGGET--RHIQSAFFTFIAPDEKGNPKVLPNMKPMNKDDFYRMKRAEARVKLRSERRMILGNDGLN---AVSLNEKNQKILCYKNILELMALYNKDTFKFKLEMAPVRLSQLKIDDSLCIRLETEVDFSAADVYRALSDHTKRIHWDMFITEVEILKEIKKSEDHVLRYKMSNLKPGCNTKGDDIIVLASCRQEKDYA---IIAYRSVKLDEFPPVPEYHRAINRCSGFII 1121
++MAWME +I+A RLC HP L ++ FR PS+VGDR+V+K+ VN+ F MEVG VEAY ET RHI SAF TF+ D P++LP ++P D R + A AR K+R +R+ I+ +V + NQ L Y N+ L L KD + E++ VRL L+ D L +E V AA + LSD +R WD VE+++++ ED + Y +++ G +TK D ++LAS R+ D +IA RSV L PEY R CSGF +
Sbjct: 241 QIMAWMENVATIAASRLCRAHPTLKAIEMFHFRGPSQVGDRLVLKAIVNNAFKHSMEVGVCVEAYRQEAETHRRHINSAFMTFVVLDADDQPQLLPWIRPQPGDGERRYREASARKKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQV--DEDDAI-YHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCL 534 HSP 2 Score: 57.7658 bits (138), Expect = 3.732e-58 Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 2
Query: 20 PKTEEEKSLFALANERKKMRLDYRSSLKRLKDNKEELQSKFVADETSDKNSHVTSDNTYSECVEIVLPQHANHHQTTFG 256
P+TEEEK ++A ER++MRL Y ++K L N +Q E+ D + V ++ T E VE+VLP HANH TFG
Sbjct: 165 PRTEEEKMEHSVAAERRRMRLVYADTIKDLLANCA-IQGDL---ESRDCSRMVPAEKTRVESVELVLPPHANHQGNTFG 239 The following BLAST results are available for this feature:
BLAST of TCONS_00020901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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