TCONS_00020899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020899
Unique NameTCONS_00020899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020899 ID=TCONS_00020899|Name=TCONS_00020899|organism=Clytia hemisphaerica|type=transcript|length=549bp
GCTCAATAATGTTTATTCTACATaaaaaaaactatcaaaatgAATTTACA
AAAGTTGATAAAAGAAGAAGTTTCAATGACCCGCTCCTTATATCGGCCAA
TTGGTTAGGGTTGGATGTTTACCAATCTTTTGGTACAGTGCGTCGAACAC
AGACATCaaatttgttgttgaaatacatgTGAGGTGGACATTGACGGCAT
GAAGCGATTCCATTGCTGCATTGAACATAGTATTGTGGTTTGTTGTTGTC
CAATCGGAATAAAGAACCATTTGGAACCCATTTGCACAAAGAGTCGTTGC
CTATTAAAGAAGTAGTTAGATGGTAATGTCACAAATTCAGgagGAACGGG
CAGTCGACATCTTGTTGGGTGATAAATTACCAATCTTTTGGTACAGTGCG
TCGAACACAGACATCaaatttgttgttgaaatacatgTGAGGTGGACATT
GACGGCAAGAAGCGATTCCATTACTGCATTGAACATAGTATTGTGGTTTG
TTGTTGTCCAATCGGAATAAAGAACCATTTGGAACCCATTTGCATAAAG
Run BLAST on NCBI

transcript from alignment at sc0000373:152523..156566-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020899 ID=TCONS_00020899|Name=TCONS_00020899|organism=Clytia hemisphaerica|type=transcript|length=4044bp|location=Sequence derived from alignment at sc0000373:152523..156566- (Clytia hemisphaerica)
GCTCAATAATGTTTATTCTACATAAAAAAAACTATCAAAATGAATTTACA
AAAGTTGATAAAAGAAGAAGTTTCAATGACCCGCTCCTTATATCGGCCAA
TTGGTTAGGGTTGGATGTTTACCAATCTTTTGGTACAGTGCGTCGAACAC
AGACATCAAATTTGTTGTTGAAATACATGTGAGGTGGACATTGACGGCAT
GAAGCGATTCCATTGCTGCATTGAACATAGTATTGTGGTTTGTTGTTGTC
CAATCGGAATAAAGAACCATTTGGAACCCATTTGCACAAAGAGTCGTTGC
CTATTAAAGAAGTAGTTAGATGGTAATGTCACAAATTCAGGAGGTTAATA
TTTTCTTTTTTGCATTCTCTTTGACTCTTCTAATAGCATAATTAACTTAA
TGCTATTTAGAGTGAAACCATATGAAATAAATTTCATAGTTTTCCTAGGG
AGATTTAACAAAATTCTTTTCCAAGACAAGGAGAGAGGCTTAAACAAACT
TAAGACTTTATTTGTAAGATTTAATGTATATGCATGAAATTAATGAAAAA
AATTACGATTTAAATATTTTTGAACTGTAATATTTTGATAGGTTAATACT
GTAAGTTACTGTCACTGGGAGATACTTACATTCTGGTGGGGACTGGGTTG
TAGTTGTTGTGGTAGTTGTTGTTGTGGATGATTTCTTGAATGAGCGAACA
CAAGCTTTGTTTTTCTCGTTGAATTCCAAACCATCAGCACATCTTCGGCA
TACTGGACCACTGTTTGTGCAAGTCACAAAATAATATGGTTTGTGCTCGT
TGTATGCAAAGATGTCTCCAACTGATCTCCATACGCATAAGGATTCTGGG
CAGGGTTGATGGGGGTGAGGTTTTGCTGCACTGCAAACTGAAAAAACAAA
TTAAAAAGTCAAATTATTGGCTTTAACACATTTAACAATTGACGCATTAG
ATGTGTCAGTATTTAATTTTTTTCACTTGTTCTTGTTTTTCCTTTTACGC
TTATTTTTCAGAGTATGATTATCCGGCTTCATACCTTTTCAAAAAGTGGT
CAATATGTTAAAATGAAAGCTTATTCAAAACTTATTCAAAATGATATTAA
AATTTACCTGCAACAAGAACAGCAAGAATGATGATCTTCATGATTGAAAC
TTTGTAGATTCTTCAAGAAACTTTTTGTTTGTTTGCTTGCTTGGTGAGAA
CACTGAATGATTTTCCACATATTTTCCAGCTCTATTTATACTGATTTTCC
AAATGCTGAATCATCCTGTTTGAATTGTTGTAGAATTAAAAGCAATTAGT
TTTTGGTCCCTGGCACAAACTACTTCCTGACCTCAAAAAGTGGGTTTGAA
ATTTTCTTAATTATTTGAATACCTTAGATAAATAAAAACACCCTTAGCGT
AGTTAAGTAATTAGATAATCAGACTGTTTGATTGAAAACCACGATTTAAA
TTGGTCAACACCAGGGTTATTACTTAAGTTAAGAAACGTAAGGTATAACT
TCCCTCTGTAACTTTCTCTCAGTACTTGATTGAAAAATTTAAGTGAGTAA
TATAGTGGCTCTTAAGCCTGAGTTTCATGTTTTTAGCTTGCTTTGAAAAT
TTCTGTAAGAAGTACATATTTTAGAAGAAAGGATCAAACTATCGAACAGT
TCGAACGAAATGGTATGATAAAAACAATTTAGTTTCATTAGCATGCATGC
ATGCTGATCGTATAAGCCAGCATTTTAACAAAGAAAAGTATCAAAATGTA
GCTTACTCGAGGATTGTGGTAATGTGGATTTACAGACTGAGCTAAATATA
TGTTCTTAATCCCTATAGCCATAAATTTTATATCTGAGAATTTAAAATCG
TCATAGACTTTTTACCTGTGTTAATTGTCAATACAAGTTATCGACCACAC
AACTTTGTAACCAAAAGTTCAGCGAGATTGGACAAGTGGTCTTACGTTCA
CGTGTATTTTAAAGACCAGTTTGCAAAGTGCTAAATTCTTATTGGACAAA
ATATTTCTTTTATCCTATCAAATTTCAGCCGACTTTGTTTCAAAAGAAGT
TGTTTCTTTTTTAGGTGAATAACTTTTTAAACAAGCCTGTCTCACAGCCC
CGGTGAAAATTCTCCCCACAGCGGGGATAAAATGTTCTTTCAAAATCCCA
AGGTGATAGAAATTCTATTGTTTCATGCTTAAGAAATCCAGTGGTTTTGG
AGTACAAATTTTATACTTTGAATTTCGAATGGGGATAAAATCAAAGTCGA
TTTCCCACTGGGGCTGAAATTGTAGGGTAGTTTTCCCACCGGAAACAAAA
TAATTTCGAACAAATTTTCCAGTTGTGCTGATGCAATGAAGTATAAGCCC
GAAGGGCTAGAAGCGAATCTATAACCTTTCTCAGGTAAGAAAAAGTAACG
ACGGATTGAATCTAGCGACTCCTTTATTTTTGAGTGATATGTTTTTCGAA
ATTCAGCGGTAAACTTTAGTTTCAATCCGGCATTTGTGTAAAAACCAGGC
GGGCCGCGCTTGGCCGCGCAACTTTGGTAGGATTTGTTGGCTTCAAATCC
TACCAAGGAGATTCGCTTCTAGCCCTTCGGGTTATACTTCATTGGGCTGG
GGTTCCAGTGGGTGTGTGACGCACCATAAGCGGGGGCTAAGACAATGTTT
ACACACTTTTACGACAGACTCTGAAGATAATCTAAAATTCGATCATATAT
AGCTCCTCGGATAGATTCAGGGCCNGCTGGGGTCCCAGTGGGTGTGTGGC
GCATCATAAGCGGGGGCTAAGAAAATGTTTACACACTTTTACGACAGACT
CTGAAGATAATCTAAAATTCGATCATAGATAGCTCCTCGGATAGATTCAG
GGTCTCCTTTCTTTTGGATGCTTCAAGGCCATTCTTTCAAGAAGGAACTG
ACAAGAGATGGATAGGCAAGGGGTATCAAAGTAGTCAGAACCGCTTTCAG
AAATAGGCGTTTTTTCTTCCTCTTCTAGGGTCGGGGTAATATTTAGGCCA
TATTTAATTTATAACCTAGACATAGACTAGAGTCTACTTCTTGCTGGGAC
TTTGCTTTTTGGTAACTTTTTATTATGCCGAGTTCAGTGAATTAGACTAG
AGGCACTAACAAGATGGAGGATAGGAGAGAAACATTAATGATGTGGAATG
CCCAATTATATTTAAAAACATCAATTTTATACCTTCCAAAAACAACTAGG
AGCTGCCAAAATTATGCAAAATCATTTTTAAAAGTTCAAAGAAAAGCAGA
CCGGATCTTTTCAGTATTAAAGCTATAGTTAAACCTTTGATTAAAAAACG
GAAAACCTGCATGGTTTGAAAACATTGTACTCTGTCTAAAATTTTTTTTG
AAGAAATTATTTTTTTGGTTTAAATTGACTTCTTCTAACTGATCAAGATT
CTCAGCAATAAAAACAAAGAACCTTTAGGACTCAGTATGGAACTGTCAAA
CTGCTTTGGGTCAACTTGTAGTGGGGTCATATTTCATTTTGCGTACACTT
ATACTTAATAATGACTAAATACACATTCAACCCTAGTAAAACTGGAGCCC
TTCCCACCCCCCCCCCCTGTATCGTTAAGATTTGATTTGTGTGTCGGAGA
AGTTCCAAGTTCCCAATCCAATGATACACGAAGGGTCTATCTTTTGTCAA
GAATGGGGTATTTTTAAACGAAAGATATTAATAGAAAATTTCAGCCCTTG
GAAGATTTTCCTATAATTAATTTGAGTTAGTAGCAGACAATTATTTTGAT
TTTCTGATGGTAGATATTTATTCTTAAAGATTATTAAAAATTTACAATAA
GGGTTAATGAATAACTCTTTCGATTGTTATTCAATCAGGAACGGGCAGTC
GACATCTTGTTGGGTGATAAATTACCAATCTTTTGGTACAGTGCGTCGAA
CACAGACATCAAATTTGTTGTTGAAATACATGTGAGGTGGACATTGACGG
CAAGAAGCGATTCCATTACTGCATTGAACATAGTATTGTGGTTTGTTGTT
GTCCAATCGGAATAAAGAACCATTTGGAACCCATTTGCATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011722XLOC_011722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020899-exon-sc0000373-1575043694:156224..156566TCONS_00020899-exon-sc0000373-1575043694:156224..156566Clytia hemisphaericaexon
TCONS_00020899-exon-sc0000373-1575043694:152523..152728TCONS_00020899-exon-sc0000373-1575043694:152523..152728Clytia hemisphaericaexon
TCONS_00020899-exon-sc0000373-1510915933:156224..156566TCONS_00020899-exon-sc0000373-1510915933:156224..156566Clytia hemisphaericaexon
TCONS_00020899-exon-sc0000373-1510915933:152523..152728TCONS_00020899-exon-sc0000373-1510915933:152523..152728Clytia hemisphaericaexon
TCONS_00020899-exon-sc0000373-1491911889:156224..156566TCONS_00020899-exon-sc0000373-1491911889:156224..156566Clytia hemisphaericaexon
TCONS_00020899-exon-sc0000373-1491911889:152523..152728TCONS_00020899-exon-sc0000373-1491911889:152523..152728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:152523..156566 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13525	1.56627	1.21184	1.03808	3.0015	0.469754	0.877908	1.16814	1.01545	1.96249	0.172596	1.03226	2.39006	0.676011	2.14266	0.991715	1.33191	0.95454	0.955691	0.309499	0.422252	0.374707	0.864902	0.967016	1.38423	0.811479	0.705341	0.410776	0.810154	0.318237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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