TCONS_00020896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020896
Unique NameTCONS_00020896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020896 ID=TCONS_00020896|Name=TCONS_00020896|organism=Clytia hemisphaerica|type=transcript|length=2467bp
aaaaaaaaaaaaaaaaaaaaatcaggagATGAATAAGGCTAAGAATAATA
TATCATGCTTTGAAAAGAGTTCAAGGGTTAAAGGGAGTTTGAGAAAACAC
GTTCAGTTTTGAAGGAAAGTTTTAGAGGCTAGCCCTCATCAAGTATTGGC
GTGTTCAAGGAATcagaatagcttgttttttagACGATTGTTTGTCAATA
GATTATCCAAGCCTGTAACTGAGATTCAAGGGTTGGGTATACAggtcaat
ttcaaaaataaaacttactcTGTTTCTGAAAAACGCATCAAATCTTTACT
GACTTcacttgaaaacatttttcgacACCCAACACGCGTCACAGCAAGAG
AGTTATCTTGTGTAGCAGGAAAAATAGTTTCTATGAAATTCGTTTTAAGA
AATGTTATTCGTCTAAAAACTCGTTTGATTTACAAAATTAATAGAATTCA
GAGTGTCTTGGGATAAGAGAATAGATTTGACATTTTATCACGACGTCCTT
AGGGaattgttattttgaaaattaaacttACGTGATTTGAATAAAAGATC
AATTAGAAAATATGAAGTACCACAGTTAAAAACCTTTTCAGATGCTAGCG
CCACGGGAATTGGAGCAATTTTAAATATTATGTTTGTTATAAACAATTTA
CAACAGATAGAAAGAGGGGAGAGTTCCACGTACATGGAGTTATTGGCTAT
TAAATATGCCATGGAGTCGTTATTGACCAGTTTTTAGacaataaaccaat
tttgtgTCATACGGCAGATAACATAAGTACAGCCATAATTGTCAGGATGG
GCAAGAATTAAAGTTTGTTACAACAGTTGGCAAATGATGTATTTACGATT
TGTAAGAGAAAAGATATAAAATTGACAGTGACTTGGATTGCTCGAAAATA
CAACGAGAAAGCAGACGAAAGTTTTTAACATCTACACAGATTTTAGGAAA
AGCAAACGCGTCGATTACATGCTCAACAATCAGGGATGAGTTGAAACAAA
TTTTGGAATTCGTGGTTTATCACAAATCGTTATATTGGTTGCACAGTTTA
AGGTCAGCAGCTGTGTTCGCAGCTTCTAATGTCAGTATAAAGAAAGGATT
TTTGACGAAACATGGACGTTGACGTCTGGAAAGTATCAAGAATAGAGATG
TATCAAAGAATATGGAAGTTTATTATACGTTTCTAAAAATAAAGGGTTAA
TTAGCGTTAATTATTGTCAATTTATAAAACTATTCTTCCTCAGTTCAAGC
AAAAGTGCACTTTGTTTCATGCTCTTAGTCGACAGGATTTGGTACGGCTC
CTACTACTACTAGAATACATTAAATCTGTCTCGAAATCGAGATTTCAGTT
GTTGTTTCATcgtgttttcaattttcattgggTCTTTGACAAGATTTTAG
AAGAATTaggaaataaattaatttattttcgttTCGTAGATAAGAAAATA
AGTGTATTTATTTACGTTTTCGTATAAAACCAAAGGTGGTCAGGGGCGTT
TAaaattattattactattaccGTTCTGTAGATTGAGAGTTTCGCGTGTt
cataaaaatggtagattttgTTATTTGCATCACACGTCGTTCAAACCTGT
TACAAGTCGTATTCTCGAAACTTCTCTTCCTCCCTTTTTGTTTTTGGAGA
ATTAGAATTTACGCGAAaggcaaaatattttatgataCGTTATATTGTTT
TTAAACGAATATGATTTTCAATTTCGGATTTTAGGTATTTTAGCATATAA
TTGCCCAATTAGATTAAAAAATTCGATTATCGAGTAATCTCATACATTTT
CAGGTTGCAAACATTTCAAATTGCATAAGTTTTCAAATTGCATAAGTTTT
CAAATTGcgtaagtttttaaaaattgcttACGTTTTCAAATTCCTTACCT
TTTCAAGTTGTATACGTTTTCAAGTTGTATACGTTTTCGGGTTGTATACG
TTTTCGGGTTGTATACGTTTTCGGGTTGTATACGTTTTCAAGTTGCATAC
GTTTTCAAGTTGCATACATTTTCGGGTCACATACGTTTTCAGGTTGTATA
CGTTTTCGGGTTGTATAAGTTTTCAGGCTACATACGGTTTCAGGTTGTAT
GCGTTTTCAAGTTGTATAAGTTTTTAGGTGGGGTGCGTTTTTTAGGTCGG
ATGCGTTTTTAGGTGGGATGCGTTTTCAGGTTGTATGCGTTTTTGGGTTA
CATACGTTTTCAGGTTGTATGCGTTTTCGGGCTACACACGTTTTCAGGTT
GTATGCGTTTTCGGGTTACATACGTTTTCGAGTGACATACGTTTTCAAGT
TTATATGGTTTCAAGTTGTTTTATTGAGTTTTTTAGGGCTCGAACTGCGA
CCCTCCACGGTTTTTGTTTCTAGCAGCCTAGTTCTCAGAGACAGTCAGGG
CACCCAAATTGGCGAACCGGGGCTAGAAAGTGTTTTCATCCGAGGGGGTC
AAGGAACGAGAGTAGNN
Run BLAST on NCBI

transcript from alignment at sc0000373:28889..31758-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020896 ID=TCONS_00020896|Name=TCONS_00020896|organism=Clytia hemisphaerica|type=transcript|length=2870bp|location=Sequence derived from alignment at sc0000373:28889..31758- (Clytia hemisphaerica)
AAAAAAAAAAAAAAAAAAAAATCAGGAGATGAATAAGGCTAAGAATAATA
TATCATGCTTTGAAAAGAGTTCAAGGGTTAAAGGGAGTTTGAGAAAACAC
GTTCAGTTTTGAAGGAAAGTTTTAGAGGCTAGCCCTCATCAAGTATTGGC
GTGTTCAAGGAATCAGAATAGCTTGTTTTTTAGACGATTGTTTGTCAATA
GATTATCCAAGCCTGTAACTGAGATTCAAGGGTTGGGTATACAGGTCAAT
TTCAAAAATAAAACTTACTCTGTTTCTGAAAAACGCATCAAATCTTTACT
GACTTCACTTGAAAACATTTTTCGACACCCAACACGCGTCACAGCAAGAG
AGTTATCTTGTGTAGCAGGAAAAATAGTTTCTATGAAATTCGTTTTAAGA
AATGTTATTCGTCTAAAAACTCGTTTGATTTACAAAATTAATAGAATTCA
GAGTGTCTTGGGATAAGAGAATAGATTTGACATTTTATCACGACGTCCTT
AGGGAATTGTTATTTTGAAAATTAAACTTACGTGATTTGAATAAAAGATC
AATTAGAAAATATGAAGTACCACAGTTAAAAACCTTTTCAGATGCTAGCG
CCACGGGAATTGGAGCAATTTTAAATATTATGTTTGTTATAAACAATTTA
CAACAGATAGAAAGAGGGGAGAGTTCCACGTACATGGAGTTATTGGCTAT
TAAATATGCCATGGAGTCGTTATTGACCAGTTTTTAGACAATAAACCAAT
TTTGTGTCATACGGCAGATAACATAAGTACAGCCATAATTGTCAGGATGG
GCAAGAATTAAAGTTTGTTACAACAGTTGGCAAATGATGTATTTACGATT
TGTAAGAGAAAAGATATAAAATTGACAGTGACTTGGATTGCTCGAAAATA
CAACGAGAAAGCAGACGAAGTAAGTAAAACAGTAGACTGGTTTATAAAAA
CAAAATTTTGCGAATGCGATACAGAAAATTGGGGGAAAGTAACGATAGAT
TTATTTGCCGACAGTGTCAACATAAAGTGTGATCGGTTTTGTTCCAAGTA
TTTTTGCCCCGGAAGTTTTAAGACACAGATGCTTTTTCCTTTGATTGGAC
AGGAGAATTTTGTCATATTATATCACCCATCTATTTAATTCCCAAAGCAA
TTAAGCATTTTCTAGCTTCTAAAGGGAGAACAAAAGGTGTTTTGATCGTG
CCTTACTGGACTTTGCAGCAGTATTTTGGCCATTCCGTTTCACGTTTTTC
TAATTGATAATCACGTTATTCAGATTTCGGTACAAGGAGGAACGTTCTTA
ATTCTAACATTTTTACTTTTAGAGTTTTTAACATCTACACAGATTTTAGG
AAAAGCAAACGCGTCGATTACATGCTCAACAATCAGGGATGAGTTGAAAC
AAATTTTGGAATTCGTGGTTTATCACAAATCGTTATATTGGTTGCACAGT
TTAAGGTCAGCAGCTGTGTTCGCAGCTTCTAATGTCAGTATAAAGAAAGG
ATTTTTGACGAAACATGGACGTTGACGTCTGGAAAGTATCAAGAATAGAG
ATGTATCAAAGAATATGGAAGTTTATTATACGTTTCTAAAAATAAAGGGT
TAATTAGCGTTAATTATTGTCAATTTATAAAACTATTCTTCCTCAGTTCA
AGCAAAAGTGCACTTTGTTTCATGCTCTTAGTCGACAGGATTTGGTACGG
CTCCTACTACTACTAGAATACATTAAATCTGTCTCGAAATCGAGATTTCA
GTTGTTGTTTCATCGTGTTTTCAATTTTCATTGGGTCTTTGACAAGATTT
TAGAAGAATTAGGAAATAAATTAATTTATTTTCGTTTCGTAGATAAGAAA
ATAAGTGTATTTATTTACGTTTTCGTATAAAACCAAAGGTGGTCAGGGGC
GTTTAAAATTATTATTACTATTACCGTTCTGTAGATTGAGAGTTTCGCGT
GTTCATAAAAATGGTAGATTTTGTTATTTGCATCACACGTCGTTCAAACC
TGTTACAAGTCGTATTCTCGAAACTTCTCTTCCTCCCTTTTTGTTTTTGG
AGAATTAGAATTTACGCGAAAGGCAAAATATTTTATGATACGTTATATTG
TTTTTAAACGAATATGATTTTCAATTTCGGATTTTAGGTATTTTAGCATA
TAATTGCCCAATTAGATTAAAAAATTCGATTATCGAGTAATCTCATACAT
TTTCAGGTTGCAAACATTTCAAATTGCATAAGTTTTCAAATTGCATAAGT
TTTCAAATTGCGTAAGTTTTTAAAAATTGCTTACGTTTTCAAATTCCTTA
CCTTTTCAAGTTGTATACGTTTTCAAGTTGTATACGTTTTCGGGTTGTAT
ACGTTTTCGGGTTGTATACGTTTTCGGGTTGTATACGTTTTCAAGTTGCA
TACGTTTTCAAGTTGCATACATTTTCGGGTCACATACGTTTTCAGGTTGT
ATACGTTTTCGGGTTGTATAAGTTTTCAGGCTACATACGGTTTCAGGTTG
TATGCGTTTTCAAGTTGTATAAGTTTTTAGGTGGGGTGCGTTTTTTAGGT
CGGATGCGTTTTTAGGTGGGATGCGTTTTCAGGTTGTATGCGTTTTTGGG
TTACATACGTTTTCAGGTTGTATGCGTTTTCGGGCTACACACGTTTTCAG
GTTGTATGCGTTTTCGGGTTACATACGTTTTCGAGTGACATACGTTTTCA
AGTTTATATGGTTTCAAGTTGTTTTATTGAGTTTTTTAGGGCTCGAACTG
CGACCCTCCACGGTTTTTGTTTCTAGCAGCCTAGTTCTCAGAGACAGTCA
GGGCACCCAAATTGGCGAACCGGGGCTAGAAAGTGTTTTCATCCGAGGGG
GTCAAGGAACGAGAGTAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011720XLOC_011720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020896-exon-sc0000373-1575043694:30840..31758TCONS_00020896-exon-sc0000373-1575043694:30840..31758Clytia hemisphaericaexon
TCONS_00020896-exon-sc0000373-1575043694:28889..30436TCONS_00020896-exon-sc0000373-1575043694:28889..30436Clytia hemisphaericaexon
TCONS_00020896-exon-sc0000373-1510915933:30840..31758TCONS_00020896-exon-sc0000373-1510915933:30840..31758Clytia hemisphaericaexon
TCONS_00020896-exon-sc0000373-1510915933:28889..30436TCONS_00020896-exon-sc0000373-1510915933:28889..30436Clytia hemisphaericaexon
TCONS_00020896-exon-sc0000373-1491911889:30840..31758TCONS_00020896-exon-sc0000373-1491911889:30840..31758Clytia hemisphaericaexon
TCONS_00020896-exon-sc0000373-1491911889:28889..30436TCONS_00020896-exon-sc0000373-1491911889:28889..30436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:28889..31758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09975	0.503203	0.326674	0.307673	2.60528	2.10757	6.91228	6.32663	0.978177	1.58598	1.32208	0.407769	0	0	0	0	0	0.170321	6.7032e-09	0	0.115561	0	0	0	0.0150419	0.301515	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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