TCONS_00020891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020891
Unique NameTCONS_00020891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020891 ID=TCONS_00020891|Name=TCONS_00020891|organism=Clytia hemisphaerica|type=transcript|length=894bp
TGCTAAAAGCAATGAACTTAATACCTGAAAAACACAATAGGtattctaaa
gcctttgttctgttgaaaatgatagaaatttcaaaaacgCCAACTATATG
GTTGATAGAGAAAAAGTTCATTAACCTTTTGATGTAATCAATCAAAATCT
TTGCGTGTAATAAAAGAACATGagataaaaaatataacatatGCATCCTA
AgtgttaaaaagataatcctaAATTTCAATCCTCAGATTTTCGAGGTTTC
TTTGCACCAGGTTCACCACCATCTTCATTCACTTTCTCTTTATCAGCGAA
AAAACTTCGAAGTTTATCAAGAGAACGTCCTCGATGTGAAATTGAATTCT
TAACATCCTTATCTAATTCCGCATACGTTTTGTCAAAACCATCTGGTAAA
AAGCAAGGGTCCCAGCCGAAGGTCCTTGGTCCTCGCGGCTCTACTATTTG
GCCATCAGTTTGCCCATGAAAGAGAATGATTTCATCTTCAGGATTTCCAG
TTGAGTATGCAAATGTACATAATGCATAAGCTGTTTTATCATCGTACGCT
GATAACATTTTATGTAAACCTTCAGGCTTTAGTTTATCTAAAAACCATTT
AATATAAGGACCAGGAAGACCCTTCAGAGCATTAAAACATAAACAAGTGT
CCTCACAAATGACCGGACCTTTAACTTCTTTTGCAGCAAGTCGACATTTT
TCACGGCTAATGTCATCTGGTTCTCCTTGAAGTTCTGGCAGATCAATCTT
TTGAGATACAATCTGGAATGGAAATGAATCACCAAGGATTTGGATGACTT
CTttcaatttgttttcatttccaGTCACAAAAGTTAAAATCTTTTTGCCT
gacataactttttatttttaatttattctttttttctagctaaa
Run BLAST on NCBI

transcript from alignment at sc0000373:156897..157888+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020891 ID=TCONS_00020891|Name=TCONS_00020891|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0000373:156897..157888+ (Clytia hemisphaerica)
TGCTAAAAGCAATGAACTTAATACCTGAAAAACACAATAGGtattctaaa
gcctttgttctgttgaaaatgatagaaatttcaaaaacgCCAACTATATG
GTTGATAGAGAAAAAGTTCATTAACCTTTTGATGTAATCAATCAAAATCT
TTGCGTGTAATAAAAGAACATGagataaaaaatataacatatGCATCCTA
AgtgttaaaaagataatcctaAATTTCAATCCTCAGATTTTCGAGGTTTC
TTTGCACCAGGTTCACCACCATCTTCTTTCACTTTCTCTTTATCAGCGAA
AAAACTTCGAAGTTTATCAAGAGAACGTCCCCGATGTGAAATTGAATTCT
TANACCAGGTTCACCACCATCTTCATTCACTTTCTCTTTATCAGCGAAAA
AACTTCGAAGTTTATCAAGAGAACGTCCTCGATGTGAAATTGAATTCTTA
ACATCCTTATCTAATTCCGCATACGTTTTGTCAAAACCATCTGGTAAAAA
GCAAGGGTCCCAGCCGAAGGTCCTTGGTCCTCGCGGCTCTACTATTTGGC
CATCAGTTTGCCCATGAAAGAGAATGATTTCATCTTCAGGATTTCCAGTT
GAGTATGCAAATGTACATAATGCATAAGCTGTTTTATCATCGTACGCTGA
TAACATTTTATGTAAACCTTCAGGCTTTAGTTTATCTAAAAACCATTTAA
TATAAGGACCAGGAAGACCCTTCAGAGCATTAAAACATAAACAAGTGTCC
TCACAAATGACCGGACCTTTAACTTCTTTTGCAGCAAGTCGACATTTTTC
ACGGCTAATGTCATCTGGTTCTCCTTGAAGTTCTGGCAGATCAATCTTTT
GAGATACAATCTGGAATGGAAATGAATCACCAAGGATTTGGATGACTTCT
ttcaatttgttttcatttccaGTCACAAAAGTTAAAATCTTTTTGCCTga
cataactttttatttttaatttattctttttttctagctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011716XLOC_011716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020891-exon-sc0000373-1491911889:156897..157156TCONS_00020891-exon-sc0000373-1491911889:156897..157156Clytia hemisphaericaexon
TCONS_00020891-exon-sc0000373-1510915933:156897..157156TCONS_00020891-exon-sc0000373-1510915933:156897..157156Clytia hemisphaericaexon
TCONS_00020891-exon-sc0000373-1575043694:156897..157156TCONS_00020891-exon-sc0000373-1575043694:156897..157156Clytia hemisphaericaexon
TCONS_00020891-exon-sc0000373-1491911889:157255..157888TCONS_00020891-exon-sc0000373-1491911889:157255..157888Clytia hemisphaericaexon
TCONS_00020891-exon-sc0000373-1510915933:157255..157888TCONS_00020891-exon-sc0000373-1510915933:157255..157888Clytia hemisphaericaexon
TCONS_00020891-exon-sc0000373-1575043694:157255..157888TCONS_00020891-exon-sc0000373-1575043694:157255..157888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:156897..157888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.7583	40.4471	31.0608	27.2441	10.0926	6.12916	5.83008	5.14379	6.63138	6.64156	6.16691	4.17057	3.70331	3.24958	12.9107	9.51336	11.1616	9.76946	3.7974	2.80861	8.26616	5.13248	20.7045	22.0651	1.84471	3.92631	5.8887	5.65281	11.1913	11.4591
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002637Ham1p-like
IPR029001ITPase-like_fam
IPR027502ITPase
Vocabulary: Biological Process
TermDefinition
GO:0009143nucleoside triphosphate catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0047429nucleoside-triphosphate diphosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009143 nucleoside triphosphate catabolic process
molecular_function GO:0047429 nucleoside-triphosphate diphosphatase activity
Blast
[Close]
BLAST of TCONS_00020891 vs. Swiss-Prot (Human)
Match: ITPA (Inosine triphosphate pyrophosphatase OS=Homo sapiens GN=ITPA PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 2.671e-87
Identity = 120/188 (63.83%), Postives = 155/188 (82.45%), Query Frame = -1 
Query:  292 MSGKKILTFVTGNENKLKEVIQILGDSFPFQIVSQKIDLPELQGEPDDISREKCRLAAKEVKGPVICEDTCLCFNALKGLPGPYIKWFLDKLKPEGLHKMLSAYDDKTAYALCTFAYSTGNPEDEIILFHGQTDGQIVEPRGPRTFGWDPCFLPDGFDKTYAELDKDVKNSISHRGRSLDKLRSFFAD 855
            + GKKI+ FVTGN  KL+EV+QILGD FP  +V+QKIDLPE QGEPD+IS +KC+ A ++V+GPV+ EDTCLCFNAL GLPGPYIKWFL+KLKPEGLH++L+ ++DK+AYALCTFA STG+P   + LF G+T G+IV PRG + FGWDPCF PDG+++TYAE+ K  KN++SHR R+L +L+ +F  
Sbjct:    5 LVGKKIV-FVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGS 191
The following BLAST results are available for this feature:
BLAST of TCONS_00020891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITPA2.671e-8763.83Inosine triphosphate pyrophosphatase OS=Homo sapie... [more]
back to top