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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020889 ID=TCONS_00020889|Name=TCONS_00020889|organism=Clytia hemisphaerica|type=transcript|length=843bp
AAGTTCGAAGCCAAAAGTTAAATCACTTTTTACGCTCTTTCTTTCAGTTT
GCAGCGCAGCACAACCTCACCCCCATCAACCCTGCCCAGACTCCTTATGT
GTATGGAAATCAGTTGGAGATATCTTCGCATATAACGAGCACAAACCATA
TTATTTTGTGACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTG
ATGGTTTGGAATTCAACGAGAAAAACAAAGCTTGTGTTCGATCattcaaa
aaatcaacaacaacgacaacaacaacaactacgACCACCCCAACTACAAC
GACCACCCGAGCCATCGACACACCAGAATGCAACGACTCTTTGTGCAAAT
GGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATAC
TATGTTCAATGCAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCA
catgtatttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAA
AAGATTGGTAAACATCCAACCCTAACCAATTGGCCGATATAAGGAGCGGG
TCATTGAAACTTCTTCTTTTATCAACTTTTGTAAATTcattttgatagtt
ttttttATGTAGAATAAACATTATTGAGCATTAATACTCCTGCGTATTTT
TTGTGTTCCTTAAAAAGAAATTACAGCtgtgatgctctctaattcgacgc
tCTACTAATCGTTACGCTCCatttttcgataatattgaaaaccATTGAAC
CAACCATGTGTTTCcctaaacgacgctctactaaaCGATATTCTCCCTTA
TTCGAGATGTAAttctccttgaaaatcgaattagagagcttcA Run BLAST on NCBI transcript from alignment at sc0000373:151893..156780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020889 ID=TCONS_00020889|Name=TCONS_00020889|organism=Clytia hemisphaerica|type=transcript|length=4888bp|location=Sequence derived from alignment at sc0000373:151893..156780+ (Clytia hemisphaerica)
AAGTTCGAAGCCAAAAGTTAAATCACTTTTTACGCTCTTTCTTTCAGTTT
GCAGCGCAGCACAACCTCACCCCCATCAACCCTGCCCAGACTCCTTATGT
GTATGGAAATCAGTTGGAGATATCTTCGCATATAACGAGCACAAACCATA
TTATTTTGTGACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTG
ATGGTTTGGAATTCAACGAGAAAAACAAAGCTTGTGTTCGATCattcaaa
aaatcaacaacaacgacaacaacaacaactacgACCACCCCAACTACAAC
GACCACCCGAGCCATCGACACACCAGAATGTAAGTATTGTTTCAAATTGA
ATANTACCACAACAACTACGACCACCACCccaactacaacaaccaccCGA
GCCATCGATGCACCAGAATGTAAGTATTGTTTCAAGTTgaacaaaaatca
ttttcttcttcagcaTATTTATTCTTAATAAAGGCTGTCATTGCTAGTTT
CTGGCTTTTGTTAAAGTTTAAAGAATACTTAAAACATTTAAGGAGCAATC
GTTAACTTAATCTTGGAAATGTCTATTAAAAGctctaatttttcttttct
cattttcttttctCACTTTAGGCAACGACTCTTTATGCAAATGGGTTCCA
AATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGTTCA
ATGCAGTAATGGAATCGCTTCTTGCCGTCAATGTCCACCTCAcatgtatt
tcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGATTGG
TAATTTATCACCCAACAAGATGTCGACTGCCCGTTCCTGATTGAATAACA
ATCGAAAGAGTTATTCATTAACCcttattgtaaatttttaataatcttTA
AGAATAAATATCTAccatcagaaaatcaaaataattgtcTGCTACTAACT
CAAATTAATTATAGGAAAATCTTCCAAGGGCTGAAATTTTCTATTAATAT
CTTTCGTTTAAAAATACCCCATTCTTGACAAAAGATAGACCCTTCGTGTA
TCATTGGATTGGGAACTTGGAACTTCTCCGACACACAAATCAAATCTTAA
cgatacagggggggggggtgggaaGGGCTCCAGTTTTACTAGGGTTGAAT
GTGTATTTAGTCATTATTAAGTATAAGTGTACGCAAAATGAAATATGACC
CCACTACAAGTTGACCCAAAGCAGTTTGACAGTTCCATACTGAGTCCTAa
aggttctttgtttttattgctGAGAATCTTGATCAGTTAGAAGAAGTCaa
tttaaaccaaaaaaataatttcttcaaaaaaaattttagacaGAGTACAA
TGTTTTCAAACCATGCAGGTTTTCCGTTTTTTAATCAAAGGTTTAACTAT
AGCTTTAATACTGAAAAGATCCGGTCTGCTTTTCtttgaacttttaaaaa
tgattttgcaTAATTTTGGCAGCTcctagttgtttttggaaggtataaaa
ttgatgtttttaaatataattGGGCATTCCACATCATTAATGTTTCTCTC
CTATCCTCCATCTTGTTAGTGCCTCTAGTCTAATTCACTGAACTCGGCAT
AATAAAAAGTTACCAAAAAGCAAAGTCCCAGcaagaagtagactctagtc
tatgtCTAGGTTATAAATTAAATATGGCCTAAATATTACCCCGACCCTAG
AAGAGGAAGAAAAAACGCCTATTTCTGAAAGCGGTTCTGACTACTTTGAT
ACCCCTTGCCTATCCATCTCTTGTCAGTTCCTTCTTGAAAGAATGGCCTT
GAAGCATCCAAAAGAAAGGAGACCCTGAATCTATCCGAGGAGCTATCTAT
GATCGAATTTTAGATTATCTTCAGAGTCTGTCGTAAAAGTGTGTAAACAT
TTTCTTAGCCCCCGCTTATGATGCGCCACacacccactgggaccccagcN
GGCCCTGAATCTATCCGAGGAGCTATATATGATCGAATTTTAGATTATCT
TCAGAGTCTGTCGTAAAAGTGTGTAAACATTGTCTTAGCCCCCGCTTATG
GTGCGTCACACACCCACTGGAACCCCAgcccaatgaagtataacccgaag
ggctagaagcgaatctccttggtaggatttgaagccaacaaatcctacca
aagttgcgcggccaaGCGCggcccgcctggtttttacacaaatgccggat
tgaaactaaagtTTACcgctgaatttcgaaaaacatATCACTCAAAAATA
AAGGagtcgctagattcaatccgtcgttaCTTTTTCTTACCTGAGAAAGG
TTatagattcgcttctagcccttcgggcttatacttcattgcatCAGCAC
AACTGGAAAATTTGttcgaaattattttgtttcCGGTGGGAAAactaccc
tacaatttcagccccagtgggaaatcgactttgattttatccccattcga
aattcaaagtATAAAatttgtactccaaaaccactGGATTTCTTAAGcat
gaaacaatagaatttctatcaccttgggattttgaaagaacattttatcc
ccgctgtgggGAGaattttcaccggggctgtgagacaggcttgtttaaaa
agttattcaCCTAAAAAAGAAACAACTTCTTTTGAAACAAAGTCGGCTGA
AATTTGATAggataaaagaaatattttgtccaATAAGAATTTAGCACTTT
GCAAactggtctttaaaatacacGTGAACGTAAGACCACTTGTCCAATCT
CGCTGAACTTTTGGTTACAAAGTTGTGTGGTCGATAACTTGTATTGACAA
TTAACACAGGTAAAAAGTCTATGACGATTTTAAATTCTCAGATATAAAAT
TTATGGCTATAGGGATTAAGAACATATATTTAGCTCAGTCTGTAAATCCA
CATTACCACAATCCTCGAGTAAGCTACATTTTGATACTTTTCTTTGTTAA
AATGCTGGCTTATACGATCAGCATGCATGCATGCTAATGAAACTAAATTG
TTTTTATCATACCATTTCGTTCGAACTGTTCGATAGTTTGATCCTTTCTT
CTAAAATATGTACTTCTTACAGAAATTTTCAAAGCAAGCTAAAAACATGA
AACTCAGGCTTAAGAGCCACTATATTACTCActtaaatttttcaatcaag
TACTGAGAGAAAGTTACAGAGGGAAGTTATACCTTACGTTTCTTAACTTA
AGTAATAACCCTGGTGTTGACCAATTTAAATCGTGGTTTTCAATCAAACA
GTCTGATTATCTAATTACTTAACTACGCTAAGGGTGTTTTTATTTATCTA
AGGTATTCAAAtaattaagaaaatttcaaacccaCTTTTTGAGGTCAGGA
AGTAGTTTGTGCCAGGGACCAAAAACTAATTGCTTTTAATTCTACAACAA
TTCAAACAGGATGATTCAGCATTTGGAAAATCAGTATAAATAGAGCTGGA
AAATATGTGGAAAATCATTCAGTGTTCTCACCaagcaagcaaacaaacaa
aaagtttcttgaagaATCTACAAAGTTTCAATCATGAAGATCATCATTCT
TGCTGTTCTTGTTGCAGGTAAATTTTAATATCATTTTGAATAAGTTTTGA
ATAAGCTTTCATTTTAACATATTGaccactttttgaaaaggtatgAAGCC
GGATAATCATACTCTGAAAAATAAGCGTAAAAGGAAAAACAAgaacaagt
gaaaaaaattaaatactgaCACATCTAATGCGTCAATTGTTAAATGTGTT
AAAGCCaataatttgactttttaatttgttttttcagTTTGCAGTGCAGC
AAAACCTCACCCCCATCAACCCTGCCCAGAATCCTTATGCGTATGGAGAT
CAGTTGGAGACATCTTTGCATACAACGAGCACAAACCATATTATTTTGTG
ACTTGCACAAACAGTGGTCCAGTATGCCGAAGATGTGCTGATGGTTTGGA
ATTCAACGAGAAAAACAAAGCTTGTGTTCGCTCATTCAAGAAATCATCCA
CAACAACAACTACCACAACAACTACAACCCAGTCCCCACCAGAATGTAAG
TATCTCCCAGTGACAGTAACTTACAGTATTAACCTATCAAAATATTAcag
ttcaaaaatatttaaatcgtaatttttttcattaatttcatGCATATACA
TTAAATCTTACAAATAAAGTCTTAAGTTTGTTTAAGCCTCTCTCCTTGTC
TTGGAAAAGAATTTTGTTAAATCTCCCTAGGAAAACTATGAAATTTATTT
CATATGGTTTCACTCTAAATAGCATTAAGTTAATTATGCTATTAGAAGAG
TCAAAGAGaatgcaaaaaagaaaatattaacctcCTGAATTTGTGACATT
ACCATCTAACTACTTCTTTAATAGGCAACGACTCTTTGTGCAAATGGGTT
CCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGT
TCAATGCAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCAcatgt
atttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGAT
TGGTAAACATCCAACCCTAACCAATTGGCCGATATAAGGAGCGGGTCATT
GAAACTTCTTCTTTTATCAACTTTTGTAAATTcattttgatagttttttt
tATGTAGAATAAACATTATTGAGCATTAATACTCCTGCGTATTTTTTGTG
TTCCTTAAAAAGAAATTACAGCtgtgatgctctctaattcgacgctCTAC
TAATCGTTACGCTCCatttttcgataatattgaaaaccATTGAACCAACC
ATGTGTTTCcctaaacgacgctctactaaaCGATATTCTCCCTTATTCGA
GATGTAAttctccttgaaaatcgaattagagagcttcA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020889-exon-sc0000373-1491911889:151893..152221 | TCONS_00020889-exon-sc0000373-1491911889:151893..152221 | Clytia hemisphaerica | exon |
| TCONS_00020889-exon-sc0000373-1510915933:151893..152221 | TCONS_00020889-exon-sc0000373-1510915933:151893..152221 | Clytia hemisphaerica | exon |
| TCONS_00020889-exon-sc0000373-1575043694:151893..152221 | TCONS_00020889-exon-sc0000373-1575043694:151893..152221 | Clytia hemisphaerica | exon |
| TCONS_00020889-exon-sc0000373-1491911889:156267..156780 | TCONS_00020889-exon-sc0000373-1491911889:156267..156780 | Clytia hemisphaerica | exon |
| TCONS_00020889-exon-sc0000373-1510915933:156267..156780 | TCONS_00020889-exon-sc0000373-1510915933:156267..156780 | Clytia hemisphaerica | exon |
| TCONS_00020889-exon-sc0000373-1575043694:156267..156780 | TCONS_00020889-exon-sc0000373-1575043694:156267..156780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:151893..156780 + |
Blast
The following BLAST results are available for this feature:
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