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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020888 ID=TCONS_00020888|Name=TCONS_00020888|organism=Clytia hemisphaerica|type=transcript|length=463bp
CAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGGAATTCAAC
GAGAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatcaacaacaacaac
tactacaaCCACAACAACTACGACCCCTACCCCAACTACAACGACCACCC
GAGCCGTCGATGCACCAGAATGCAATGACTCTTTGTGCAAATGGGTTCCA
AATGGTTCTTTATTCCGATTAAACAACAACAAACCACAATACTATGTTCA
ATGCAGCAATGGAATCGCTTCTTGTCGTCAATGTCCACCTCAcatgtatt
tcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGACTGG
TAATATATCACCCCAACAAGATGTAGACTGACCTGACCTGATTGAATAAC
AATCGAAAGAGTTATTCATTAACCcttattgtaaatttttaataatcttT
AAGAATAAATATC Run BLAST on NCBI protein sequence of TCONS_00020888-protein >TCONS_00020888-protein ID=TCONS_00020888-protein|Name=TCONS_00020888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
NSGPVCRRCADGLEFNEKNKACVRSFKKSTTTTTTTTTTTTPTPTTTTTR
AVDAPECNDSLCKWVPNGSLFRLNNNKPQYYVQCSNGIASCRQCPPHMYF
NNKFDVCVRRTVPKDW Run BLAST on NCBI transcript from alignment at sc0000373:143539..144278+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020888 ID=TCONS_00020888|Name=TCONS_00020888|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at sc0000373:143539..144278+ (Clytia hemisphaerica)
CAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGGAATTCAAC
GAGAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatcaacaacaacaac
tactacaaCCACAACAACTACGACCCCTACCCCAACTACAACGACCACCC
GAGCCGTCGATGCACCAGAATGTAAGTATTCATCcagttgaaaaaaatat
ttttcttcctcAGTAGGAAATCTTTTTCTGATGTAAACTGTCATTGCTAA
TTTTTTGTCGCTGCTGAAATTCTGATATTGAAAGATTCTACGTACCAATA
TTATACAGACGTGACAATCTATACGCATGTTGGTATTCATGTTAGTTAAA
TTCTGAGCATTTTAGGAACAgttaaaaactataaaaatcTACAGCACCAA
CCTTCAAAAATTCGGAAACATTTACCATCATTCCTTTTGTTTCTTTAGGC
AATGACTCTTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCGATTAAA
CAACAACAAACCACAATACTATGTTCAATGCAGCAATGGAATCGCTTCTT
GTCGTCAATGTCCACCTCAcatgtatttcaacaacaaatttGATGTCTGT
GTTCGACGCACTGTACCAAAAGACTGGTAATATATCACCCCAACAAGATG
TAGACTGACCTGACCTGATTGAATAACAATCGAAAGAGTTATTCATTAAC
CcttattgtaaatttttaataatcttTAAGAATAAATATC Coding sequence (CDS) from alignment at sc0000373:143539..144278+ >TCONS_00020888 ID=TCONS_00020888|Name=TCONS_00020888|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000373:143539..144278+ (Clytia hemisphaerica)
AACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGGAATTCAACGA
GAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatcaacaacaacaacta
ctacaaCCACAACAACTACGACCCCTACCCCAACTACAACGACCACCCGA
GCCGTCGATGCACCAGAATGCAATGACTCTTTGTGCAAATGGGTTCCAAA
TGGTTCTTTATTCCGATTAAACAACAACAAACCACAATACTATGTTCAAT
GCAGCAATGGAATCGCTTCTTGTCGTCAATGTCCACCTCAcatgtatttc
aacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGACTGGTA
AAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGGAATTCAACG
AGAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatcaacaacaacaact
actacaaCCACAACAACTACGACCCCTACCCCAACTACAACGACCACCCG
AGCCGTCGATGCACCAGAATGCAATGACTCTTTGTGCAAATGGGTTCCAA
ATGGTTCTTTATTCCGATTAAACAACAACAAACCACAATACTATGTTCAA
TGCAGCAATGGAATCGCTTCTTGTCGTCAATGTCCACCTCAcatgtattt
caacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGACTGGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020888-exon-sc0000373-1491911889:143539..143709 | TCONS_00020888-exon-sc0000373-1491911889:143539..143709 | Clytia hemisphaerica | exon |
| TCONS_00020888-exon-sc0000373-1510915933:143539..143709 | TCONS_00020888-exon-sc0000373-1510915933:143539..143709 | Clytia hemisphaerica | exon |
| TCONS_00020888-exon-sc0000373-1575043694:143539..143709 | TCONS_00020888-exon-sc0000373-1575043694:143539..143709 | Clytia hemisphaerica | exon |
| TCONS_00020888-exon-sc0000373-1491911889:143987..144278 | TCONS_00020888-exon-sc0000373-1491911889:143987..144278 | Clytia hemisphaerica | exon |
| TCONS_00020888-exon-sc0000373-1510915933:143987..144278 | TCONS_00020888-exon-sc0000373-1510915933:143987..144278 | Clytia hemisphaerica | exon |
| TCONS_00020888-exon-sc0000373-1575043694:143987..144278 | TCONS_00020888-exon-sc0000373-1575043694:143987..144278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:143539..144278 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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