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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020885 ID=TCONS_00020885|Name=TCONS_00020885|organism=Clytia hemisphaerica|type=transcript|length=842bp
GTGAGATGTGAGCGCCTATAAATAAGAATCAGAGTTTTGAGGAACAGCAG
TTCATTCATAAACAGTAGAATTAAATCGTAGAATAAAAACCAAGAAGCAA
AAAGAAGATTTATCAAATTGAGAACCTGAAATATCAAGACTAACAATCCA
ATCCAACACAACGACAGACATGGAACAAAAAACACTGCTGATCCAAATCA
TTGCACTTTTCAATATCATCCTTCTCACGAACACTGCATTAACAACAGAT
CCAAACAGTATGCCGTTAACTTCATGTTACCGCAGATGCGGGATGAGAAA
TCCAAATTGCCATTCTTTGAACGACAATAAATCACATCAATGCCAACTTA
TGATAACCTGCATAAAATCTTGTTATGGTGAATACTTATCAGAGCACAGG
GATTACGTTAACCAACGTAGAGAATACGCCGTCAATAACAACGTAGAGGA
GACGGGATCTTTCACTGAAATGACCAACAAGAGAGCTGTTTACAAAAGGG
CGTGTTTGAGCCAATGTGATGCGGACAGATATATGTGTTTTCATTTGTCA
GACACTGTAAGGGGAGTTTTCAGTTGCAATCTGTCTAATAATATGTGTAG
AAGCAATTGCGCTTAAAAGTGCAAAGAAATTGAacgtaatattttttcaa
agactaTTGTATTATCAAATTTAAAGCAATATTTTAATATTAGAAGCTTT
CTTCCTTCAAAAAGCCCAAATCAGATTACTCTATATTGAACTTGGTCGAA
TCTAATCGAACTATTAAGTTCAGTCGAATACACAGGTtgtaaaaattaaa
ttctgaagacaaatcacgctttacTCGAAATTGTTATGTGGT Run BLAST on NCBI transcript from alignment at sc0000373:124754..126846+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020885 ID=TCONS_00020885|Name=TCONS_00020885|organism=Clytia hemisphaerica|type=transcript|length=2093bp|location=Sequence derived from alignment at sc0000373:124754..126846+ (Clytia hemisphaerica)
GTGAGATGTGAGCGCCTATAAATAAGAATCAGAGTTTTGAGGAACAGCAG
TTCATTCATAAACAGTAGAATTAAATCGTAGAATAAAAACCAAGAAGCAA
AAAGAAGATTTATCAAATTGAGAACCTGAAATATCAAGGTAAGATTTTTA
TTGTCTTTGAGATTTTGGTGAGCCCaatttttgatttcataaaGTGATCC
CGATGGGGAAATATATAATTCTTTATGAGTAAATTGTATATTTTGCGTAG
AGCAGATTTTACCCCTGGGACTATGCAAATGAATACAAAAATTGTaataa
gaattattttgaaaaatgactattCTAAAAGCTCTTTAAAATCACCCCTT
AGATAAATCTCCTAGAATCATGGTGCGTCTGGAAGgctaaaaacctttac
tttttCAACAATTTAGAAGTATCAAAGCGCTTTAACACCTGAACACAGCT
CTCCAACAGTTTAGACTTAGTCTAACTGTGGATTTGAAGTAAAATTTGCT
TTGATTCATAGCGTTTTTAGTGCTCTGAATGGTTTCTAACaattcttgaa
atttctttCCAATAAGAATTGCTAAACACTTTTTAAGacgattttttact
tttaacaaTTCAAATAGGGGGTACTTAAGCCACAAAGAgggtaaaatgtt
tttatatagtatCATTTTAAACTAGCAGAGTAAGATATAATACTTTTCGC
TTGCTTAACTATCGACAAGGTAATGATCAGACCACGGAGGGATAGGGGAG
AGGAGGGATAAACCATGTTCTGGGAGGGTGAATTAGGAGAATTTTTGTTA
AAAGGGCAAAGTATTGGCTCGTCTAGAAAGGAGGCAACTAATTCGACTTT
AATTTCTAATTTTAGATCCTTACACATGGTTGAAATCCTAAcagttttct
ttttctattcCGAACTGATAGAGCCCACACCCTAAAATCGTCCGTTAcaa
tgatagtaaaggcgggaaaatattaTAGCGCGGAGCTTACAGCCGTTATG
GCGGTAGACggaaaaaaaaatcggcgggagatgATCCAAGTATCCAAGAA
TAtccaaaaagaaagatattatttCTTGGGATCACTCTTGTCTCAGTTCA
GTTTCTCTCTCCCgcctgtttttattttattttgattttttcaaataccG
AACACACAGTTGGCGCCAAGTTATTTTGCGCCAAAATTGTAAGTTtggca
aactctaccggctgtaaattcttttcggcaaaaaaaaacaatttgtgaAT
ATTCTttggctttgggcttttttcttagatagtgattcgtcttaaaCTAT
AGCATAGTCGAcctacacccctgcctcacagacATTTGGATGATCCTTAT
CAATAATAAGTAGCTAATGTGTAACTCTTTTTTTAGAAGACTAACAATCC
AATCCAACACAACGACAGACATGGAACAAAAAACACTGCTGATCCAAATC
ATTGCACTTTTCAATATCATCCTTCTCACGAACACTGCATTAACAACAGA
TCCAAACAGTATGCCGTTAACTTCATGTTACCGCAGATGCGGGATGAGAA
ATCCAAATTGCCATTCTTTGAACGACAATAAATCACATCAATGCCAACTT
ATGATAACCTGCATAAAATCTTGTTATGGTGAATACTTATCAGAGCACAG
GGATTACGTTAACCAACGTAGAGAATACGCCGTCAATAACAACGTAGAGG
AGACGGGATCTTTCACTGAAATGACCAACAAGAGAGCTGTTTACAAAAGG
GCGTGTTTGAGCCAATGTGATGCGGACAGATATATGTGTTTTCATTTGTC
AGACACTGTAAGGGGAGTTTTCAGTTGCAATCTGTCTAATAATATGTGTA
GAAGCAATTGCGCTTAAAAGTGCAAAGAAATTGAacgtaatattttttca
aagactaTTGTATTATCAAATTTAAAGCAATATTTTAATATTAGAAGCTT
TCTTCCTTCAAAAAGCCCAAATCAGATTACTCTATATTGAACTTGGTCGA
ATCTAATCGAACTATTAAGTTCAGTCGAATACACAGGTtgtaaaaattaa
attctgaagacaaatcacgctttacTCGAAATTGTTATGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020885-exon-sc0000373-1491911889:124754..124891 | TCONS_00020885-exon-sc0000373-1491911889:124754..124891 | Clytia hemisphaerica | exon |
| TCONS_00020885-exon-sc0000373-1510915933:124754..124891 | TCONS_00020885-exon-sc0000373-1510915933:124754..124891 | Clytia hemisphaerica | exon |
| TCONS_00020885-exon-sc0000373-1575043694:124754..124891 | TCONS_00020885-exon-sc0000373-1575043694:124754..124891 | Clytia hemisphaerica | exon |
| TCONS_00020885-exon-sc0000373-1491911889:126143..126846 | TCONS_00020885-exon-sc0000373-1491911889:126143..126846 | Clytia hemisphaerica | exon |
| TCONS_00020885-exon-sc0000373-1510915933:126143..126846 | TCONS_00020885-exon-sc0000373-1510915933:126143..126846 | Clytia hemisphaerica | exon |
| TCONS_00020885-exon-sc0000373-1575043694:126143..126846 | TCONS_00020885-exon-sc0000373-1575043694:126143..126846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:124754..126846 + |
Blast
The following BLAST results are available for this feature:
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