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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020878 ID=TCONS_00020878|Name=TCONS_00020878|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CGGATCACTTCTTCATCTCAACAACTTGTCAACTACAAAGGCTTAtctat
ttttaagtttttaaaaatgaagataatCTGGCTGAAACACAATTTGATCA
CATTTCTTTACTATGTTATAAACATGTCTTTGGCTGTCAATCCCTGCTTT
TTTGAGCTATCTGTCGAAGATCATAGAATTGAGCAggagtttatttttca
aaaccaaaCTGCGCAAAGTTTGCTTCAATGCAGTCATCATTGCGAAAAGG
CTGTGAAGAAGATAAAGATTTGCACGGGCTTCAACTATTGCAAGAGTCAG
CATAAATGTGAGCTGTTTTCTATTGGACATCCTCTGAAACTACATCATGG
AATCACAAGTGAAGGGTGTGCGATTTATACGCGAATGgatGTGAGTCATC
CCTTATCTTGCGACAAACGCCAAAACATGGTTTGCAACGATTCAGAAGGA
TGTCAATGCCAGTGTGATGGTCTGCGATTTCTCGGTGAAAAATGTCAATA
CGAAATTGGTTTCCAACTCAACATAGAAAATAATATCGGTTCCTCTGTTA
GTTACGTTTGGATCCCGTCCATCAAAAACACAAATGAAGATCACATCAGT
ATTTGCTTCACATTCAAAACACGCCACCTAGGTGATCAACATCAAACTGT
CTTAGCGTTGTATCAAGCTAATGGGTTCATGGACGGGGGTTATCAAAAGA
TGATGAATTTCTCAATCAAAAGTACTGGTTACATGCTCCATGTTGATTCT
GTATCTCAAGGTGAAgccttcaaaaatattttaatggaGCAAGGGGTATG
GTACCCAGTCTGTATTTCATGGTCAGCTTACAGTAGCACAATGAATGTTT
CATTTGATGGTCAATTTGATTCTTACCCTGATGATAGACCAAAACATATA
GCACACACTGAAGTTGACATGAAAATGATGTTGGGCACATCCTTAAAAGG
AGATGGTTCTAAAGGAGACACTATAGCTGGTCAAGAGGAAAACAAATTCA
ATGGTGAAATCTCCTATTTGTTTATTTACAAtcggattttgagtttgacg
gAAATGCAAAGATATGACCAGAAGCAATGGATCGATGATGACTCTGTAAG
CTTTCGTTGGAATGAAGCCAATTTCCAGGAGAATTTTCATGGCAATGTTT
CAGTGACCATAGTTTAAATGTATGGAAGTAGACTAATGCGTGAAAAGGGT
GACAGTAAAGGCATAACCTATCAGATAGTAATGCCAAATTTTAAACTTAC
ATCTACATGAAAAAATTCGATGGAGG Run BLAST on NCBI protein sequence of TCONS_00020878-protein >TCONS_00020878-protein ID=TCONS_00020878-protein|Name=TCONS_00020878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
RITSSSQQLVNYKGLSIFKFLKMKIIWLKHNLITFLYYVINMSLAVNPCF
FELSVEDHRIEQEFIFQNQTAQSLLQCSHHCEKAVKKIKICTGFNYCKSQ
HKCELFSIGHPLKLHHGITSEGCAIYTRMDVSHPLSCDKRQNMVCNDSEG
CQCQCDGLRFLGEKCQYEIGFQLNIENNIGSSVSYVWIPSIKNTNEDHIS
ICFTFKTRHLGDQHQTVLALYQANGFMDGGYQKMMNFSIKSTGYMLHVDS
VSQGEAFKNILMEQGVWYPVCISWSAYSSTMNVSFDGQFDSYPDDRPKHI
AHTEVDMKMMLGTSLKGDGSKGDTIAGQEENKFNGEISYLFIYNRILSLT
EMQRYDQKQWIDDDSVSFRWNEANFQENFHGNVSVTIV Run BLAST on NCBI transcript from alignment at sc0000373:95660..99034+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020878 ID=TCONS_00020878|Name=TCONS_00020878|organism=Clytia hemisphaerica|type=transcript|length=3375bp|location=Sequence derived from alignment at sc0000373:95660..99034+ (Clytia hemisphaerica)
CGGATCACTTCTTCATCTCAACAACTTGTCAACTACAAAGGCTTAtctat
ttttaagtttttaaaaatgaagataatCTGGCTGAAACACAATTTGATCA
CATTTCTTTACTATGTTATAAACATGTCTTTGGCTGTCAATCCCTGCTTT
TTTGAGCTATCTGTCGAAGATCATAGAATTGAGCAggagtttatttttca
aaaccaaaCTGCGCAAAGTTTGCTTCAATGCAGTCATCATTGCGAAAAGG
CTGTGAAGAAGATAAAGATTTGCACGGGCTTCAACTATTGCAAGAGTCAG
CATAAATGTGAGCTGTTTTCTATTGGACATCCTCTGAAACTACATCATGG
AATCACAAGTGAAGGGTGTGCGATTTATACGCGAATGGTAAGGataacat
tttttcaatttaattgacCAAAAGCAATCGGTCACGAGGCAGACAAACGT
GTTCAACGTatatatttttccatttttgttaATGGAAATCCGTATTGTAT
TACCCTTAACGATTTTATGGTGACTTGGTCGGCCCTTCGTTTAGGATTTG
AATATTTCTGGGTTTCCATTCATGCTGAGACAAAACCACTAGCTTCAATT
CTTTCTGCAGCCATCTAAAATTATGACAACTCCTCCCTTTACTACTTTAC
CGTAACTTATAAGacataatattttcaggatGTGAGTCATCCCTTATCTT
GCGACAAACGCCAAAACATGGTTTGCAACGATTCAGAAGGATGTCAATGC
CAGTGTGATGGTCTGCGATTTCTCGGTGAAAAATGTCAATACGGTGAgaa
gatgttttttttatcatatcaATCCATAACATAACGTGAAAAGCACATGC
CGAAATCATATTCCGACCTGTGCCGACTAAtggagattctattcagcgca
caATCGACttaagtaaccatgacgacaatccaagatcttggttTGAATTC
AAAgttgattattttattttcgtcgttgaaaacacaactcaaaaatgtca
tcaacgctttttaaaaagagtcaagatctatttgttattttgattccaAT
GAAAGTAAATTGCCATAATagtaatagtttagtaattactgttatacatt
tgggaatcatgtagaagatttcttttgcaagtaactcatttcaattacac
ttggaggtttctggggattTTGTCAATTAGTAAACATTTATATtgatcat
agaggtataaagaaaaacaggagttgaatgtgtcggtaattggtcgttaa
agtcttttgatttcctttataaaatgtatcaaaagaaattctaagcttac
acgatgaaataagacattttagtagaactcaagtttgttCTGATCATTCT
aattatcagtattgaagatttgtatatgtaatcacatgataacgagtgca
attcgaatataattgcacgagtgattttttgttattaattttccgagtcc
gagtccgaaaggacgaggaaaattagaaacaaaaaaatcacgagtgcaat
tttcgaattgtacgagttattatgtgattacgagctaatcacACAATGGc
tgtcactactttttcccagttaggaaagtaaattacagaaattacactga
gagttttatatttttcttttctctttatgtctttcttttattgttgttta
ttgattttctttctcacaaaataaatttcgaatgcaattaaaacgttcga
tgcaaaaaaaatgtaagaaataatattaaattcaattttgtaaacattgg
cgccgcatcggagagtgtgattaacgattaattgctctctacaggatgca
gcgtgccaaataagaaaaaataacccaccGTGCGATTatagccttttaat
atacgaaaatttgGATAAAACTTTGTCCatgaaacaagtttatgttccat
tttgttatccgttcaattttgttttcaaaagatattttctcaaaccagaa
aatgaaaatttctttataagcacacacgatttcagactcaatttgtagac
ataaagtcgctggagaattttggaggaaagtatcaagcaatagagttcac
tttaaagaaaacattgattaaaaaatcttatcatttgatgaaggattgcc
aagtttacaggcatttttttagtcaaaatattttcttacactaatgtcag
aaacaatgaatctcgtctcatctaatttctaaagcttaaatgagccaata
agatttcacctatgaataaaagagctcattaaaaatgcacgtaatatgag
attatgagcatgcatacatcgtaatttttttaatcgtagggcgagcttgg
ttacaatagcatacttctcctgtttctttatacctccatgtattgataca
gtctgctagacaatGATATTCATCTTGATTAAATTGACACATACACTCGA
TAAAATTACTACACTTGgtcgtcagaggttgatattttctcttaaaactc
aacctctgatactcagggtatacATAACACTGCACAACCTTTCAAATGAT
GTTATACTTCAtcacccagtcccccaaaaaaCCTCAACCAGGCCAGCCTA
GGTTCTTCCTTAAGTCTATCATTCATAAAATTTCACACTTTATCTTTTCA
GAAATTGGTTTCCAACTCAACATAGAAAATAATATCGGTTCCTCTGTTAG
TTACGTTTGGATCCCGTCCATCAAAAACACAAATGAAGATCACATCAGTA
TTTGCTTCACATTCAAAACACGCCACCTAGGTGATCAACATCAAACTGTC
TTAGCGTTGTATCAAGCTAATGGGTTCATGGACGGGGGTTATCAAAAGAT
GATGAATTTCTCAATCAAAAGTACTGGTTACATGCTCCATGTTGATTCTG
TATCTCAAGGTGAAgccttcaaaaatattttaatggaGCAAGGGGTATGG
TACCCAGTCTGTATTTCATGGTCAGCTTACAGTAGCACAATGAATGTTTC
ATTTGATGGTCAATTTGATTCTTACCCTGATGATAGACCAAAACATATAG
CACACACTGAAGTTGACATGAAAATGATGTTGGGCACATCCTTAAAAGGA
GATGGTTCTAAAGGAGACACTATAGCTGGTCAAGAGGAAAACAAATTCAA
TGGTGAAATCTCCTATTTGTTTATTTACAAtcggattttgagtttgacgg
AAATGCAAAGATATGACCAGAAGCAATGGATCGATGATGACTCTGTAAGC
TTTCGTTGGAATGAAGCCAATTTCCAGGAGAATTTTCATGGCAATGTTTC
AGTGACCATAGTTTAAATGTATGGAAGTAGACTAATGCGTGAAAAGGGTG
ACAGTAAAGGCATAACCTATCAGATAGTAATGCCAAATTTTAAACTTACA
TCTACATGAAAAAATTCGATGGAGG Coding sequence (CDS) from alignment at sc0000373:95660..99034+ >TCONS_00020878 ID=TCONS_00020878|Name=TCONS_00020878|organism=Clytia hemisphaerica|type=CDS|length=3501bp|location=Sequence derived from alignment at sc0000373:95660..99034+ (Clytia hemisphaerica)
CGGATCACTTCTTCATCTCAACAACTTGTCAACTACAAAGGCTTAtctat
ttttaagtttttaaaaatgaagataatCTGGCTGAAACACAATTTGATCA
CATTTCTTTACTATGTTATAAACATGTCTTTGGCTGTCAATCCCTGCTTT
TTTGAGCTATCTGTCGAAGATCATAGAATTGAGCAggagtttatttttca
aaaccaaaCTGCGCAAAGTTTGCTTCAATGCAGTCATCATTGCGAAAAGG
CTGTGAAGAAGATAAAGATTTGCACGGGCTTCAACTATTGCAAGAGTCAG
CATAAATGTGAGCTGTTTTCTATTGGACATCCTCTGAAACTACATCATGG
AATCACAAGTGAAGGGTGTGCGATTTATACGCGAATGgatGTGAGTCATC
CCTTATCTTGCGACAAACGCCAAAACATGGTTTGCAACGATTCAGAAGGA
TGTCAATGCCAGTGTGATGGTCTGCGATTTCTCGGTGAAAAATGTCAATA
CGAAATTGGTTTCCAACTCAACATAGAAAATAATATCGGTTCCTCTGTTA
GTTACGTTTGGATCCCGTCCATCAAAAACACAAATGAAGATCACATCAGT
ATTTGCTTCACATTCAAAACACGCCACCTAGGTGATCAACATCAAACTGT
CTTAGCGTTGTATCAAGCTAATGGGTTCATGGACGGGGGTTATCAAAAGA
TGATGAATTTCTCAATCAAAAGTACTGGTTACATGCTCCATGTTGATTCT
GTATCTCAAGGTGAAgccttcaaaaatattttaatggaGCAAGGGGTATG
GTACCCAGTCTGTATTTCATGGTCAGCTTACAGTAGCACAATGAATGTTT
CATTTGATGGTCAATTTGATTCTTACCCTGATGATAGACCAAAACATATA
GCACACACTGAAGTTGACATGAAAATGATGTTGGGCACATCCTTAAAAGG
AGATGGTTCTAAAGGAGACACTATAGCTGGTCAAGAGGAAAACAAATTCA
ATGGTGAAATCTCCTATTTGTTTATTTACAAtcggattttgagtttgacg
gAAATGCAAAGATATGACCAGAAGCAATGGATCGATGATGACTCTGTAAG
CTTTCGTTGGAATGAAGCCAATTTCCAGGAGAATTTTCATGGCAATGTTT
CAGTGACCATAGTTTAACGGATCACTTCTTCATCTCAACAACTTGTCAAC
TACAAAGGCTTAtctatttttaagtttttaaaaatgaagataatCTGGCT
GAAACACAATTTGATCACATTTCTTTACTATGTTATAAACATGTCTTTGG
CTGTCAATCCCTGCTTTTTTGAGCTATCTGTCGAAGATCATAGAATTGAG
CAggagtttatttttcaaaaccaaaCTGCGCAAAGTTTGCTTCAATGCAG
TCATCATTGCGAAAAGGCTGTGAAGAAGATAAAGATTTGCACGGGCTTCA
ACTATTGCAAGAGTCAGCATAAATGTGAGCTGTTTTCTATTGGACATCCT
CTGAAACTACATCATGGAATCACAAGTGAAGGGTGTGCGATTTATACGCG
AATGgatGTGAGTCATCCCTTATCTTGCGACAAACGCCAAAACATGGTTT
GCAACGATTCAGAAGGATGTCAATGCCAGTGTGATGGTCTGCGATTTCTC
GGTGAAAAATGTCAATACGAAATTGGTTTCCAACTCAACATAGAAAATAA
TATCGGTTCCTCTGTTAGTTACGTTTGGATCCCGTCCATCAAAAACACAA
ATGAAGATCACATCAGTATTTGCTTCACATTCAAAACACGCCACCTAGGT
GATCAACATCAAACTGTCTTAGCGTTGTATCAAGCTAATGGGTTCATGGA
CGGGGGTTATCAAAAGATGATGAATTTCTCAATCAAAAGTACTGGTTACA
TGCTCCATGTTGATTCTGTATCTCAAGGTGAAgccttcaaaaatatttta
atggaGCAAGGGGTATGGTACCCAGTCTGTATTTCATGGTCAGCTTACAG
TAGCACAATGAATGTTTCATTTGATGGTCAATTTGATTCTTACCCTGATG
ATAGACCAAAACATATAGCACACACTGAAGTTGACATGAAAATGATGTTG
GGCACATCCTTAAAAGGAGATGGTTCTAAAGGAGACACTATAGCTGGTCA
AGAGGAAAACAAATTCAATGGTGAAATCTCCTATTTGTTTATTTACAAtc
ggattttgagtttgacggAAATGCAAAGATATGACCAGAAGCAATGGATC
GATGATGACTCTGTAAGCTTTCGTTGGAATGAAGCCAATTTCCAGGAGAA
TTTTCATGGCAATGTTTCAGTGACCATAGTTTAACGGATCACTTCTTCAT
CTCAACAACTTGTCAACTACAAAGGCTTAtctatttttaagtttttaaaa
atgaagataatCTGGCTGAAACACAATTTGATCACATTTCTTTACTATGT
TATAAACATGTCTTTGGCTGTCAATCCCTGCTTTTTTGAGCTATCTGTCG
AAGATCATAGAATTGAGCAggagtttatttttcaaaaccaaaCTGCGCAA
AGTTTGCTTCAATGCAGTCATCATTGCGAAAAGGCTGTGAAGAAGATAAA
GATTTGCACGGGCTTCAACTATTGCAAGAGTCAGCATAAATGTGAGCTGT
TTTCTATTGGACATCCTCTGAAACTACATCATGGAATCACAAGTGAAGGG
TGTGCGATTTATACGCGAATGgatGTGAGTCATCCCTTATCTTGCGACAA
ACGCCAAAACATGGTTTGCAACGATTCAGAAGGATGTCAATGCCAGTGTG
ATGGTCTGCGATTTCTCGGTGAAAAATGTCAATACGAAATTGGTTTCCAA
CTCAACATAGAAAATAATATCGGTTCCTCTGTTAGTTACGTTTGGATCCC
GTCCATCAAAAACACAAATGAAGATCACATCAGTATTTGCTTCACATTCA
AAACACGCCACCTAGGTGATCAACATCAAACTGTCTTAGCGTTGTATCAA
GCTAATGGGTTCATGGACGGGGGTTATCAAAAGATGATGAATTTCTCAAT
CAAAAGTACTGGTTACATGCTCCATGTTGATTCTGTATCTCAAGGTGAAg
ccttcaaaaatattttaatggaGCAAGGGGTATGGTACCCAGTCTGTATT
TCATGGTCAGCTTACAGTAGCACAATGAATGTTTCATTTGATGGTCAATT
TGATTCTTACCCTGATGATAGACCAAAACATATAGCACACACTGAAGTTG
ACATGAAAATGATGTTGGGCACATCCTTAAAAGGAGATGGTTCTAAAGGA
GACACTATAGCTGGTCAAGAGGAAAACAAATTCAATGGTGAAATCTCCTA
TTTGTTTATTTACAAtcggattttgagtttgacggAAATGCAAAGATATG
ACCAGAAGCAATGGATCGATGATGACTCTGTAAGCTTTCGTTGGAATGAA
GCCAATTTCCAGGAGAATTTTCATGGCAATGTTTCAGTGACCATAGTTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020878-exon-sc0000373-1491911889:95660..96046 | TCONS_00020878-exon-sc0000373-1491911889:95660..96046 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1510915933:95660..96046 | TCONS_00020878-exon-sc0000373-1510915933:95660..96046 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1575043694:95660..96046 | TCONS_00020878-exon-sc0000373-1575043694:95660..96046 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1491911889:96338..96452 | TCONS_00020878-exon-sc0000373-1491911889:96338..96452 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1510915933:96338..96452 | TCONS_00020878-exon-sc0000373-1510915933:96338..96452 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1575043694:96338..96452 | TCONS_00020878-exon-sc0000373-1575043694:96338..96452 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1491911889:98261..99034 | TCONS_00020878-exon-sc0000373-1491911889:98261..99034 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1510915933:98261..99034 | TCONS_00020878-exon-sc0000373-1510915933:98261..99034 | Clytia hemisphaerica | exon |
| TCONS_00020878-exon-sc0000373-1575043694:98261..99034 | TCONS_00020878-exon-sc0000373-1575043694:98261..99034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:95660..99034 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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