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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020872 ID=TCONS_00020872|Name=TCONS_00020872|organism=Clytia hemisphaerica|type=transcript|length=842bp
CAATTGAAGGATTGGAGAAGACCAGATTAACAATGAAGTTATTATTGTTT
GTAACTGTCGCCTTTGCATTTCATGTGAGCGAATGTTCGGCAACATGGGA
ATCATGCCAGCAAATATTGCAGTCCAACCCAAACGCGCAAAGTGGTATTC
ACACCATCTACTTACCATCAGGAGCATATGACATGTATTGTGAAATGGGT
ATAAACGGTGGTGGCTACACGTTTATCCCGAATGAAGCTGTTGCCTTAAT
GACACCCCAAGATATTAACATCTTGTTCCGAAACAAACGAGATGTCTTAT
TGCGATTAGCAAATGTTGATGGGACGCAACCGTTCACTGTGATCAAACCG
AGACGTGCAAACGGTCTTTCTGTCCAATTGTCCTCGTATACAGGTTACAC
AAAGCCTGTTAACAGACATCTAGGACCGTATATCTTTTTTGGCACCCATC
CATTCGTGCATTCACATGCAGGTCAGACTCTCGGCTTCATCTCCAACCAT
CGACATGTCACCTATAAGAATTGCGGAAAAGGCGTTGGAGCAAATAATCT
GTTCGCTTTTTTCCCGAATCCTAAAGAACGTCCAGTATCCAATTATCACA
TTACCAATTTGGTTTACGAGAGACAAGGTGTTGCTGTTGATTGGAGAGCT
ACTGCTAAGAGACCACAATCCACCAGAAGAATCcctgaaaatttcttcat
gttCACCGAAATGCATTTTGGGGGATGTGGAACATACACTTCAAGTGACC
GATGGGTATTCTCTGGTACCAAACATCGTGCATTAGGAGTTGCAATCGGA
CTGAAATAAAATGTGTCGTGTTACAATGAAATTCTGAACCCA Run BLAST on NCBI protein sequence of TCONS_00020872-protein >TCONS_00020872-protein ID=TCONS_00020872-protein|Name=TCONS_00020872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
IEGLEKTRLTMKLLLFVTVAFAFHVSECSATWESCQQILQSNPNAQSGIH
TIYLPSGAYDMYCEMGINGGGYTFIPNEAVALMTPQDINILFRNKRDVLL
RLANVDGTQPFTVIKPRRANGLSVQLSSYTGYTKPVNRHLGPYIFFGTHP
FVHSHAGQTLGFISNHRHVTYKNCGKGVGANNLFAFFPNPKERPVSNYHI
TNLVYERQGVAVDWRATAKRPQSTRRIPENFFMFTEMHFGGCGTYTSSDR
WVFSGTKHRALGVAIGLK Run BLAST on NCBI transcript from alignment at sc0000373:60211..61496+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020872 ID=TCONS_00020872|Name=TCONS_00020872|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at sc0000373:60211..61496+ (Clytia hemisphaerica)
CAATTGAAGGATTGGAGAAGACCAGATTAACAATGAAGTTATTATTGTTT
GTAACTGTCGCCTTTGCATTTCATGTAAgtattcaataaatctaattttt
taTGGGATTTTTGGACTCTTGCGATGTATATGATCAAGCTCTTTGCTGGT
TTGTTTGTACAATCCGGAAATCTTAACATTTTAGTCGAGTTGATTTAATA
AGGTCATTCCTTCAATTTCAGACCACGTTcacacgtgacggttccgtaTT
GTTCCGAAGCGAAATGAAGCTATTCTATTGGTCAATTTTCGGACCAACGT
CATTTCTAACCAtagaatagttttttttttcggaacaATAGAGAATCGTC
atgtgcgaacatggtctaagaATCGGCTGAAATGAGACAATTTAGAGTCT
ATTTCTGGACCTTGTACATATAACATAAAGGCTAGTACTCCACCTGGGAC
ACCCGTATGGTTAGAGGTGGGTGCGAGATTTCTAGTCATAATTAACATAT
TTTGTATTATTTTCCAAGGTGAGCGAATGTTCGGCAACATGGGAATCATG
CCAGCAAATATTGCAGTCCAACCCAAACGCGCAAAGTGGTATTCACACCA
TCTACTTACCATCAGGAGCATATGACATGTATTGTGAAATGGGTATAAAC
GGTGGTGGCTACACGTTTATCCCGAATGAAGCTGTTGCCTTAATGACACC
CCAAGATATTAACATCTTGTTCCGAAACAAACGAGATGTCTTATTGCGAT
TAGCAAATGTTGATGGGACGCAACCGTTCACTGTGATCAAACCGAGACGT
GCAAACGGTCTTTCTGTCCAATTGTCCTCGTATACAGGTTACACAAAGCC
TGTTAACAGACATCTAGGACCGTATATCTTTTTTGGCACCCATCCATTCG
TGCATTCACATGCAGGTCAGACTCTCGGCTTCATCTCCAACCATCGACAT
GTCACCTATAAGAATTGCGGAAAAGGCGTTGGAGCAAATAATCTGTTCGC
TTTTTTCCCGAATCCTAAAGAACGTCCAGTATCCAATTATCACATTACCA
ATTTGGTTTACGAGAGACAAGGTGTTGCTGTTGATTGGAGAGCTACTGCT
AAGAGACCACAATCCACCAGAAGAATCcctgaaaatttcttcatgttCAC
CGAAATGCATTTTGGGGGATGTGGAACATACACTTCAAGTGACCGATGGG
TATTCTCTGGTACCAAACATCGTGCATTAGGAGTTGCAATCGGACTGAAA
TAAAATGTGTCGTGTTACAATGAAATTCTGAACCCA Coding sequence (CDS) from alignment at sc0000373:60211..61496+ >TCONS_00020872 ID=TCONS_00020872|Name=TCONS_00020872|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at sc0000373:60211..61496+ (Clytia hemisphaerica)
ATTGAAGGATTGGAGAAGACCAGATTAACAATGAAGTTATTATTGTTTGT
AACTGTCGCCTTTGCATTTCATGTGAGCGAATGTTCGGCAACATGGGAAT
CATGCCAGCAAATATTGCAGTCCAACCCAAACGCGCAAAGTGGTATTCAC
ACCATCTACTTACCATCAGGAGCATATGACATGTATTGTGAAATGGGTAT
AAACGGTGGTGGCTACACGTTTATCCCGAATGAAGCTGTTGCCTTAATGA
CACCCCAAGATATTAACATCTTGTTCCGAAACAAACGAGATGTCTTATTG
CGATTAGCAAATGTTGATGGGACGCAACCGTTCACTGTGATCAAACCGAG
ACGTGCAAACGGTCTTTCTGTCCAATTGTCCTCGTATACAGGTTACACAA
AGCCTGTTAACAGACATCTAGGACCGTATATCTTTTTTGGCACCCATCCA
TTCGTGCATTCACATGCAGGTCAGACTCTCGGCTTCATCTCCAACCATCG
ACATGTCACCTATAAGAATTGCGGAAAAGGCGTTGGAGCAAATAATCTGT
TCGCTTTTTTCCCGAATCCTAAAGAACGTCCAGTATCCAATTATCACATT
ACCAATTTGGTTTACGAGAGACAAGGTGTTGCTGTTGATTGGAGAGCTAC
TGCTAAGAGACCACAATCCACCAGAAGAATCcctgaaaatttcttcatgt
tCACCGAAATGCATTTTGGGGGATGTGGAACATACACTTCAAGTGACCGA
TGGGTATTCTCTGGTACCAAACATCGTGCATTAGGAGTTGCAATCGGACT
GAAATAAATTGAAGGATTGGAGAAGACCAGATTAACAATGAAGTTATTAT
TGTTTGTAACTGTCGCCTTTGCATTTCATGTGAGCGAATGTTCGGCAACA
TGGGAATCATGCCAGCAAATATTGCAGTCCAACCCAAACGCGCAAAGTGG
TATTCACACCATCTACTTACCATCAGGAGCATATGACATGTATTGTGAAA
TGGGTATAAACGGTGGTGGCTACACGTTTATCCCGAATGAAGCTGTTGCC
TTAATGACACCCCAAGATATTAACATCTTGTTCCGAAACAAACGAGATGT
CTTATTGCGATTAGCAAATGTTGATGGGACGCAACCGTTCACTGTGATCA
AACCGAGACGTGCAAACGGTCTTTCTGTCCAATTGTCCTCGTATACAGGT
TACACAAAGCCTGTTAACAGACATCTAGGACCGTATATCTTTTTTGGCAC
CCATCCATTCGTGCATTCACATGCAGGTCAGACTCTCGGCTTCATCTCCA
ACCATCGACATGTCACCTATAAGAATTGCGGAAAAGGCGTTGGAGCAAAT
AATCTGTTCGCTTTTTTCCCGAATCCTAAAGAACGTCCAGTATCCAATTA
TCACATTACCAATTTGGTTTACGAGAGACAAGGTGTTGCTGTTGATTGGA
GAGCTACTGCTAAGAGACCACAATCCACCAGAAGAATCcctgaaaatttc
ttcatgttCACCGAAATGCATTTTGGGGGATGTGGAACATACACTTCAAG
TGACCGATGGGTATTCTCTGGTACCAAACATCGTGCATTAGGAGTTGCAA
TCGGACTGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020872-exon-sc0000373-1491911889:60211..60284 | TCONS_00020872-exon-sc0000373-1491911889:60211..60284 | Clytia hemisphaerica | exon |
| TCONS_00020872-exon-sc0000373-1510915933:60211..60284 | TCONS_00020872-exon-sc0000373-1510915933:60211..60284 | Clytia hemisphaerica | exon |
| TCONS_00020872-exon-sc0000373-1575043694:60211..60284 | TCONS_00020872-exon-sc0000373-1575043694:60211..60284 | Clytia hemisphaerica | exon |
| TCONS_00020872-exon-sc0000373-1491911889:60729..61496 | TCONS_00020872-exon-sc0000373-1491911889:60729..61496 | Clytia hemisphaerica | exon |
| TCONS_00020872-exon-sc0000373-1510915933:60729..61496 | TCONS_00020872-exon-sc0000373-1510915933:60729..61496 | Clytia hemisphaerica | exon |
| TCONS_00020872-exon-sc0000373-1575043694:60729..61496 | TCONS_00020872-exon-sc0000373-1575043694:60729..61496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:60211..61496 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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