TCONS_00020867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020867
Unique NameTCONS_00020867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020867 ID=TCONS_00020867|Name=TCONS_00020867|organism=Clytia hemisphaerica|type=transcript|length=1108bp
gcttgtaatattagaaatggcccaaatctttagtcggtcttaattattag
tcggcccttagtgactaaattttgacgaggtgactaaaattagggccgac
acataattaaggccgactaaaattaaggccgactaagttttggccgataa
ggtatcttaTATGTATATATTAACATATCAATTTAAATTGTGATTATTTA
CTGTAACTAGAATACAAATAATTATAGTCTCTTTTCACTTTAGACTCTTC
TGCTCTTCCTGTTCCTTGCTACTCTTGTAGCTTTTGCTTGTGGTTCTAAG
CATCCTAAAGAATCCAATGACGACAACATCGACTTTGGGGATGACTCCAT
ATCCTCATTGCTGCGAAACGAAGTCTTAAATAGTGATGAGGAAAACGAAG
ATAACGATGATAATGAGATTGAAGACAATGAAGAATTTGAAGATGAGGAA
CTTTTACAGAATGATGTAATGCAAAAAGATCCATTTCTTTTTTCTCgaag
aagacgaagaagaagaagatgtgCAAGTCCTGCTAAAAAAAAATGTCATG
TGAAAACCAATGGCTGTGGATCTGGCTGGTCCGCGAAAATTCCATACATG
TACAAGAAATTGTTGACTCCTGCATGTAACAAACATGATGTTTGTTATAG
CTGTGGCAAAAAATTTGGTTGGTCACAAAAACCTTGTGATGTTCGATTCA
AAAAAGACATGTATCGATTATGCAGGTGCAAGTTAACTGGATGGAGGGTT
GTTCTTCGACCGCTTTGCTATAAGAAAGCACTTCTATTGTACAGCATCGT
TCGTCTCTTTGGAAAGAAGCATTACAACAAAGTTGCTTCGAATTGGTGCA
AAAGCTGTGCGATTCCATACGGAAGCCCTAATTATACtgtttgaattatt
ttcatcttttgaaattttgctgtaGCCAAAACAAAGTCATTATGTATTTG
AATGATACTAAAAATGTTAGAAGTTTTATTTTACCACGATACTACCAGTC
CCGCGCCTAGCTCGATCGGTTAGGTTCTATCCGAATTGGAAAGAGATTTC
CCGAGCTTGAAGAATTAGCTCAAATCGAAAAATGACTCAACACTAAGCCT
ACGATGAC
Run BLAST on NCBI

transcript from alignment at sc0000373:39083..41784+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020867 ID=TCONS_00020867|Name=TCONS_00020867|organism=Clytia hemisphaerica|type=transcript|length=2702bp|location=Sequence derived from alignment at sc0000373:39083..41784+ (Clytia hemisphaerica)
gcttgtaatattagaaatggcccaaatctttagtcggtcttaattattag
tcggcccttagtgactaaattttgacgaggtgactaaaattagggccgac
acataattaaggccgactaaaattaaggccgactaagttttggccgataa
ggtatcttaTATGTATATATTAACATATCAATTTAAATTGTGATTATTTA
CTGTAACTAGAATACAAATAATTATAGTCTCTTTTCACTTTAGACTCTTC
TGCTCTTCCTGTTCCTTGCTACTCTTGTAGCTTTTGCTTGTGGTTCTAAG
CATCCTAAAGAATCCAATGACGACAACATCGACTTTGGGGATGACTCCAT
ATCCTCATTGCTGCGAAACGAAGTCTTAAATAGGTAATTACTTTGATTAT
CTTGTCAGCTAAGTAACTAAAACATAACTAGCCGTTCCGGTGTCGTCCGA
GACGACCCTTTTGCAattatttttctcgcttcgctcgctttaaTTTTGCC
GTCGAACTCTtgataatttgaaaaactttggcGCCAAGATAAAGGAGTGA
GATATAAAACGTACATCGTCCTACACCAGGAAGTCATGAACTTTAAAGCT
GCTATCATTTTTTTTGTAGTGATGAGGAAAACGAAGATAACGATGATAAT
GAGATTGAAGACAATGAAGAATTTGAAGATGAGGAACTTTTACAGAATGA
TGTAATGCAAAAAGATCCATTTCTTTTTTCTCgaagaagacgaagaagaa
gaagatgtgCAAGTCCTGCTAAAAAAAGTAGGTTTCggttttaatgattt
tattaAGAAAAATCCCCTTCTGATATTGCGAATTAGTCTAAAACTATTTC
TCGAGACTTATTCCGATGCataagaatttaatttttttctcccaaAAAGG
AAAGATCTTTTTCACCTAAAACAATCTACTTTTTTACATCATACAGTAAC
CCCAAAGATCATAATTATAAGTCCATACAAAAGAGTTGATACtgatagac
aaaatattttatagAATGGTCTCTAGACAAGATATTCTATTATTGTTTCG
TTTAGAATGTCATGTGAAAACCAATGGCTGTGGATCTGGCTGGTCCGCGA
AAATTCCATACATGTACAAGAAATTGTTGACTCCTGCATGTAACAAACAT
GATGTTTGTTATAGCTGTGTAAGTCAATGATATATTTGATACTTTTTCGG
CAAATTTAAACCCAGCCCCTAGTTTacctttttatgattttatggcTTTT
ATGATTCTTATAGCTCTCACGATAGGCGTGTGTCACTTCCATTGGTATAG
TTAAAAAGTGATGAAGGTGGCTGTGACATTGACCTAGATCTAGATTGATC
TTTTTGGTCTTCATAATGGAGTGTCTATGCAAAAGCATCACTTCTGATGA
AACTCATGCTTTTTTATTACAACAAAATTGATAATTCTTTAGTCTGtgta
aaattttgactttttggctacTTCAAATAAAAGCACGCCTTTTTTCTTCC
AAGCCCGAGTTACCCTgaagatccatgctatgatttcttattatttatat
actgatggcgaaatatatagcatgctTTGGGCTAGGAGTTCctagatcct
aataacggttgaaaacacagccaatcaaattttgttattctcttactggt
cacactttcttagaaaaaGTGCAAGCTCcgaattttggtttttattttag
tatgtGAGAACatcgctaaattcgaatttcgcactgtaaattttttgagg
cagaaatctaCCTCACAGCTCATACGCGTCCTGTATAtatcagattttaa
aaaaatacaggacgggtctcctgtctaagCCCGAGTTACAACTCTTCCTT
ACTTGGCTTTTTGATAAAACCACATTTATAACTCGTTTACTGTAACTCAG
CTTTTCTGGACGTAAGTTTCCGACGAACTGAGATAATTTCGGTTGAATGA
atatgatagtttctttttgAATGAGATAGCttcgtttaaaaaaagatagt
ttcgttttaaatgagatagtttctccTGAAATGAacttagtttcttttta
agggAAATAGTATCCCTTGAATGAaacatagtttctttttaaacgagata
gtaAATGACagtttcgttttaaacaagatagtatttattggcgCTTCCGC
GCGCCATAATAAAGCTCCCTTTGGTAAAGCAACTTATGAAATGGAATTGT
CAAAGATTTTAATGTAATTTTCACTAAACACTTTTTTGTTAATTCCAGGG
CAAAAAATTTGGTTGGTCACAAAAACCTTGTGATGTTCGATTCAAAAAAG
ACATGTATCGATTATGCAGGTGCAAGTTAACTGGATGGAGGGTTGTTCTT
CGACCGCTTTGCTATAAGAAAGCACTTCTATTGTACAGCATCGTTCGTCT
CTTTGGAAAGAAGCATTACAACAAAGTTGCTTCGAATTGGTGCAAAAGCT
GTGCGATTCCATACGGAAGCCCTAATTATACtgtttgaattattttcatc
ttttgaaattttgctgtaGCCAAAACAAAGTCATTATGTATTTGAATGAT
ACTAAAAATGTTAGAAGTTTTATTTTACCACGATACTACCAGTCCCGCGC
CTAGCTCGATCGGTTAGGTTCTATCCGAATTGGAAAGAGATTTCCCGAGC
TTGAAGAATTAGCTCAAATCGAAAAATGACTCAACACTAAGCCTACGATG
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011701XLOC_011701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020867-exon-sc0000373-1491911889:39083..39465TCONS_00020867-exon-sc0000373-1491911889:39083..39465Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1510915933:39083..39465TCONS_00020867-exon-sc0000373-1510915933:39083..39465Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1575043694:39083..39465TCONS_00020867-exon-sc0000373-1575043694:39083..39465Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1491911889:39702..39859TCONS_00020867-exon-sc0000373-1491911889:39702..39859Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1510915933:39702..39859TCONS_00020867-exon-sc0000373-1510915933:39702..39859Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1575043694:39702..39859TCONS_00020867-exon-sc0000373-1575043694:39702..39859Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1491911889:40138..40250TCONS_00020867-exon-sc0000373-1491911889:40138..40250Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1510915933:40138..40250TCONS_00020867-exon-sc0000373-1510915933:40138..40250Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1575043694:40138..40250TCONS_00020867-exon-sc0000373-1575043694:40138..40250Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1491911889:41331..41784TCONS_00020867-exon-sc0000373-1491911889:41331..41784Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1510915933:41331..41784TCONS_00020867-exon-sc0000373-1510915933:41331..41784Clytia hemisphaericaexon
TCONS_00020867-exon-sc0000373-1575043694:41331..41784TCONS_00020867-exon-sc0000373-1575043694:41331..41784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:39083..41784 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.058047	0	0.133112	0.0444027	0.0527836	0.0493174	0	0.0425341	0.210452	0	11.6851	18.9941	0.0850889	0	0.612824	0.54489	20.7106	17.9924	0.468076	0.349146	4.69195e-07	0.565976	0.0676937	0.102163	1.79686	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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