TCONS_00020863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020863
Unique NameTCONS_00020863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020863 ID=TCONS_00020863|Name=TCONS_00020863|organism=Clytia hemisphaerica|type=transcript|length=1194bp
caaacttttatcaaaaacaaCAAGCTAGCTCTTGTCAGCTTAGATAAAGT
ATAAATGTAGCTCCAAAAATTAGAGTAGTATATTTTCATTTAGCGCTTCA
CCCCTCAAGAGCCATGATGAAGAACTTCCTACTGGTTTTACTTTTGGTGA
CACTTTCAATTTATCCATCTGCTTCTAAACATCCGGAAGAAACCAACGTT
GAGAATGCAACTGACAATGATTCCATGCAGGAgagagaacaattaaaaag
TGATGAGAGAAACGAGAGAAACGACAAAGAAGCTGGAGCTGGCGAGATTG
AAGACAATGAAGACTTCGAAGATGAAGAACTTTTAAAAAAGAATGTAATG
CGAAAAGATCCATTGCTTTTTTCTCGAAGAAGACGGAGAAGAAGAAGACG
TGCAAGTCCTGCAAAACAACCTTGCTATGTGGAAACCAATGGCTGTGGAT
CGggcattttcacaaaaattccaTACACATTCAAGAAATTGTTGACCCCT
GCATGTAACAAGCATGATGTTTGTTTTCGTTGTGGCCAGAAATATAGTTG
GTCACGAAAAGCTTGTGATGAAACCTTCAGGAAAGACATGAACCGATTAT
GCAGATGCAAGTTGACTGGATTGAAAGCTGTGCTCCAACCGCACTGTTAT
AAAAGAGCGTTGGAGATGTATGGCATTGTACGATTATTTGGGAAGCCTTT
CTTTAGAGATCCTGCTGAAGATTGGTGTAAAAGTTGTGTGGTCCCATATG
GTAGCCCAAACTATACTGTTTGAGAATAAATGTTCCATCAAGCATGACTT
GTTTTAATGagggattgttttttttttatattttttacttgggttaaaaa
atatatgtagcTCTCTTTGATAACTTTCCTACTAGTTTGACCAAAGGAAA
TGAACtgcagatttttcaaactccatcTATCTCACGCCATCGTTCTCCTA
GATACTCCAAAAACTCTGTTGAAAGCGTTGTTACACTATTTCAGTGATTC
CATTCATCAGCtataaaagctttttaaaagcCGTTTAGCACAATCCGAAA
TGACTTTTTTGGTGTTGTTCGAGTTTAATATGCCTTCATAAACGAAACTG
GCTGATGTATTGATGAGCCCTCCCTCCTAGGACTAGCAACACCCCTCGTA
ACGCCACCACATAGATTTCTTTCTCTTATCACTAGAACGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000373:25966..28002+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020863 ID=TCONS_00020863|Name=TCONS_00020863|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at sc0000373:25966..28002+ (Clytia hemisphaerica)
caaacttttatcaaaaacaaCAAGCTAGCTCTTGTCAGCTTAGATAAAGT
ATAAATGTAGCTCCAAAAATTAGAGTAGTATATTTTCATTTAGCGCTTCA
CCCCTCAAGAGCCATGATGAAGGTAGGCATGGTGGTTTTGTACATACAAT
CTATCAACCTTTCTCATCTACTTAATATACAGAAAGATTTTCCTTGTATA
GTTATAATTTGACTATCCTACCAAAATGTTTTTAGTAACTCTCTAGTATT
CTTACTATTTATCTAACTCCAGAACTTCCTACTGGTTTTACTTTTGGTGA
CACTTTCAATTTATCCATCTGCTTCTAAACATCCGGAAGAAACCAACGTT
GAGAATGCAACTGACAATGATTCCATGCAGGAgagagaacaattaaaaag
gTATTACAACTGACATTCTTTAATTTGATGTTGTATTTGATCTTGATCCC
TGTTTTCTGTCAAACGAAGCAAGCCACTTTTAAAGAATTCCATATAAACT
ATTCTTATAAAGGTTCTGCTCTGTTTACTTCAACATTCTCTATAAGTGAA
CGAACCTTTGAAATAACTCTCAAATTTTTATAGTGATGAGAGAAACGAGA
GAAACGACAAAGAAGCTGGAGCTGGCGAGATTGAAGACAATGAAGACTTC
GAAGATGAAGAACTTTTAAAAAAGAATGTAATGCGAAAAGATCCATTGCT
TTTTTCTCGAAGAAGACGGAGAAGAAGAAGACGTGCAAGTCCTGCAAAAC
AACGTAAGGATTACTGAACATTTCCCCGACGGATTTTTCTCTTCCCGACA
ATTCCCCAACGAACGTTTCCCCAAACGGACTTACCTGAATGAACTTAAAA
TGAACGTAAAACGAGTCCCTACTTTTCCCCGACGGGTGCTTCCCTGAATT
TCGTTCTTCGGGAATCCTCGGAAGAGAATCTTCATTGTTTATACTATGAA
GtgatacagtcgctctcatatTGTCTtttgaccagccaccagaaccgttg
gaaaatcaacggatcctggcaagactcgaactcacaaccatgccattcgc
aGGAATTTGTtctaccattgagctacgggtccGAACCTAAGGACTCAATT
GCTTAATTCTTTATACTAGTATTCATATTCAATTATTCGTTTTACGTTTA
GCTTGCTATGTGGAAACCAATGGCTGTGGATCGggcattttcacaaaaat
tccaTACACATTCAAGAAATTGTTGACCCCTGCATGTAACAAGCATGATG
TTTGTTTTCGTTGTGTAAGTTGATGAAACATCCATTGCAAAAATACTTGC
GCTTGTTCCGCCGAGCCTTTATCAGCTTAATTTTCTAAAccaaattttaa
agaatacaCTTCTTTAATTTTTGCAGGGCCAGAAATATAGTTGGTCACGA
AAAGCTTGTGATGAAACCTTCAGGAAAGACATGAACCGATTATGCAGATG
CAAGTTGACTGGATTGAAAGCTGTGCTCCAACCGCACTGTTATAAAAGAG
CGTTGGAGATGTATGGCATTGTACGATTATTTGGGAAGCCTTTCTTTAGA
GATCCTGCTGAAGATTGGTGTAAAAGTTGTGTGGTCCCATATGGTAGCCC
AAACTATACTGTTTGAGAATAAATGTTCCATCAAGCATGACTTGTTTTAA
TGagggattgttttttttttatattttttacttgggttaaaaaatatatg
tagcTCTCTTTGATAACTTTCCTACTAGTTTGACCAAAGGAAATGAACtg
cagatttttcaaactccatcTATCTCACGCCATCGTTCTCCTAGATACTC
CAAAAACTCTGTTGAAAGCGTTGTTACACTATTTCAGTGATTCCATTCAT
CAGCtataaaagctttttaaaagcCGTTTAGCACAATCCGAAATGACTTT
TTTGGTGTTGTTCGAGTTTAATATGCCTTCATAAACGAAACTGGCTGATG
TATTGATGAGCCCTCCCTCCTAGGACTAGCAACACCCCTCGTAACGCCAC
CACATAGATTTCTTTCTCTTATCACTAGAACGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011701XLOC_011701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020863-exon-sc0000373-1491911889:25966..26087TCONS_00020863-exon-sc0000373-1491911889:25966..26087Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1510915933:25966..26087TCONS_00020863-exon-sc0000373-1510915933:25966..26087Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1575043694:25966..26087TCONS_00020863-exon-sc0000373-1575043694:25966..26087Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1491911889:26238..26365TCONS_00020863-exon-sc0000373-1491911889:26238..26365Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1510915933:26238..26365TCONS_00020863-exon-sc0000373-1510915933:26238..26365Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1575043694:26238..26365TCONS_00020863-exon-sc0000373-1575043694:26238..26365Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1491911889:26549..26718TCONS_00020863-exon-sc0000373-1491911889:26549..26718Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1510915933:26549..26718TCONS_00020863-exon-sc0000373-1510915933:26549..26718Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1575043694:26549..26718TCONS_00020863-exon-sc0000373-1575043694:26549..26718Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1491911889:27117..27229TCONS_00020863-exon-sc0000373-1491911889:27117..27229Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1510915933:27117..27229TCONS_00020863-exon-sc0000373-1510915933:27117..27229Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1575043694:27117..27229TCONS_00020863-exon-sc0000373-1575043694:27117..27229Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1491911889:27342..28002TCONS_00020863-exon-sc0000373-1491911889:27342..28002Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1510915933:27342..28002TCONS_00020863-exon-sc0000373-1510915933:27342..28002Clytia hemisphaericaexon
TCONS_00020863-exon-sc0000373-1575043694:27342..28002TCONS_00020863-exon-sc0000373-1575043694:27342..28002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:25966..28002 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0375955	0.0364911	0	6.56405	14.869	0	0	0	0	9.71967	12.5164	0.0468053	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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