TCONS_00020820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020820
Unique NameTCONS_00020820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020820 ID=TCONS_00020820|Name=TCONS_00020820|organism=Clytia hemisphaerica|type=transcript|length=234bp
CTCTTATCCCGAACGCctatcaccctgggtttacaattgAGCTTTCTCTT
ATCCCGAGTAACcattaccctgggtttacaatttGACCTTCCTTAATCAC
GAGCGCCTATCACCCTGGGTTTGCAACGGCCTTCTATTATCATGAGAGCC
CATCGCcctgttttaaaaaagtgtttacaattgggccttccaCTTTCACA
CgtacactgaagttgagcccagtgctttaGCACG
Run BLAST on NCBI

transcript from alignment at sc0000370:294249..294482

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020820 ID=TCONS_00020820|Name=TCONS_00020820|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at sc0000370:294249..294482 (Clytia hemisphaerica)
CGTGCtaaagcactgggctcaacttcagtgtacGTGTGAAAGtggaaggc
ccaattgtaaacacttttttaaaacaggGCGATGGGCTCTCATGATAATA
GAAGGCCGTTGCAAACCCAGGGTGATAGGCGCTCGTGATTAAGGAAGGTC
aaattgtaaacccagggtaatgGTTACTCGGGATAAGAGAAAGCTcaatt
gtaaacccagggtgatagGCGTTCGGGATAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011682XLOC_011682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020820-exon-sc0000370-1491911889:294249..294482TCONS_00020820-exon-sc0000370-1491911889:294249..294482Clytia hemisphaericaexon
TCONS_00020820-exon-sc0000370-1510915933:294249..294482TCONS_00020820-exon-sc0000370-1510915933:294249..294482Clytia hemisphaericaexon
TCONS_00020820-exon-sc0000370-1575043694:294249..294482TCONS_00020820-exon-sc0000370-1575043694:294249..294482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:294249..294482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.9625	3.86406	4.48654	1.09735	0	2.11131	1.2736	5.96167	1.66956	3.10203	0	1.3195	1.9765	6.15785	2.81255	1.81098	0.743658	6.09781	9.47751	6.61168	0.957792	0	0	2.06527	0	5.69537	2.71669	1.44966	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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