TCONS_00020819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020819
Unique NameTCONS_00020819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020819 ID=TCONS_00020819|Name=TCONS_00020819|organism=Clytia hemisphaerica|type=transcript|length=465bp
TTCCAGCAACTTCTTTTGGTGCTCGTGATCTTTAACCAGAGCTGCCTTCT
CCATATCCTTGATTTTCATCTCCTTAGCTGCAATCTCCTTATCCTTTTCC
ACCAGTTTTTTCTCCAACTCATGATCAGCAACCATTTTCTTTGAATCTAC
TTCATGAGAGGTTTGAAGCTTCAACATTTGAAGTTGATAAGTCAAAGACT
GGTTGTCCTTTTCAAGCTGCATGATCTTCATTCGATTGTTATTTTCCGAT
TCAAgaaattttatcttattttcgaactggattttttcgatttcttttgc
ATGGTCTTCCTTGATTTTCGTCATTTCACGGTTGTCGGTTCTCATCGTGC
TCCTTCCATCTGCACAGTGAGCTAAGTTACGTTCGTCAGTATGAGCAGAA
TCCATCTTAATTTGCAATAAAATGTTACGTCTACTGTTCCTACTTTTGAG
TGAATTCCAGACTAC
Run BLAST on NCBI

protein sequence of TCONS_00020819-protein

>TCONS_00020819-protein ID=TCONS_00020819-protein|Name=TCONS_00020819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
VVWNSLKSRNSRRNILLQIKMDSAHTDERNLAHCADGRSTMRTDNREMTK
IKEDHAKEIEKIQFENKIKFLESENNNRMKIMQLEKDNQSLTYQLQMLKL
QTSHEVDSKKMVADHELEKKLVEKDKEIAAKEMKIKDMEKAALVKDHEHQ
KKLLE
Run BLAST on NCBI

transcript from alignment at sc0000370:219411..219875

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020819 ID=TCONS_00020819|Name=TCONS_00020819|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0000370:219411..219875 (Clytia hemisphaerica)
GTAGTCTGGAATTCACTCAAAAGTAGGAACAGTAGACGTAACATTTTATT
GCAAATTAAGATGGATTCTGCTCATACTGACGAACGTAACTTAGCTCACT
GTGCAGATGGAAGGAGCACGATGAGAACCGACAACCGTGAAATGACGAAA
ATCAAGGAAGACCATgcaaaagaaatcgaaaaaatccagttcgaaaataa
gataaaatttcTTGAATCGGAAAATAACAATCGAATGAAGATCATGCAGC
TTGAAAAGGACAACCAGTCTTTGACTTATCAACTTCAAATGTTGAAGCTT
CAAACCTCTCATGAAGTAGATTCAAAGAAAATGGTTGCTGATCATGAGTT
GGAGAAAAAACTGGTGGAAAAGGATAAGGAGATTGCAGCTAAGGAGATGA
AAATCAAGGATATGGAGAAGGCAGCTCTGGTTAAAGATCACGAGCACCAA
AAGAAGTTGCTGGAA

Coding sequence (CDS) from alignment at sc0000370:219411..219875

>TCONS_00020819 ID=TCONS_00020819|Name=TCONS_00020819|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000370:219411..219875 (Clytia hemisphaerica)
GTAGTCTGGAATTCACTCAAAAGTAGGAACAGTAGACGTAACATTTTATT
GCAAATTAAGATGGATTCTGCTCATACTGACGAACGTAACTTAGCTCACT
GTGCAGATGGAAGGAGCACGATGAGAACCGACAACCGTGAAATGACGAAA
ATCAAGGAAGACCATgcaaaagaaatcgaaaaaatccagttcgaaaataa
gataaaatttcTTGAATCGGAAAATAACAATCGAATGAAGATCATGCAGC
TTGAAAAGGACAACCAGTCTTTGACTTATCAACTTCAAATGTTGAAGCTT
CAAACCTCTCATGAAGTAGATTCAAAGAAAATGGTTGCTGATCATGAGTT
GGAGAAAAAACTGGTGGAAAAGGATAAGGAGATTGCAGCTAAGGAGATGA
AAATCAAGGATATGGAGAAGGCAGCTCTGGTTAAAGATCACGAGCACCAA
AAGAAGTTGCTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011681XLOC_011681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020819-exon-sc0000370-1491911889:219411..219875TCONS_00020819-exon-sc0000370-1491911889:219411..219875Clytia hemisphaericaexon
TCONS_00020819-exon-sc0000370-1510915933:219411..219875TCONS_00020819-exon-sc0000370-1510915933:219411..219875Clytia hemisphaericaexon
TCONS_00020819-exon-sc0000370-1575043694:219411..219875TCONS_00020819-exon-sc0000370-1575043694:219411..219875Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020819-proteinTCONS_00020819-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:219411..219875 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40481	4.32455	2.19678	3.37733	0.373779	0	0	0.333606	0.350349	0	0	0.27689	1.38253	3.733	17.3912	15.2854	6.55422	5.5449	4.86152	7.55377	1.33992	1.76463	14.9365	13.8684	6.10049	7.70204	1.90027	2.83923	7.84474	8.61942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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