TCONS_00020817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020817
Unique NameTCONS_00020817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020817 ID=TCONS_00020817|Name=TCONS_00020817|organism=Clytia hemisphaerica|type=transcript|length=257bp
ctcgagttaggtacagaaatcacctatactcgcaatatatgtctaaactt
aattttttgagagttttCCAGGCACCTGGAAAATATGGGCGCGTGAAAAA
ATTAGGCGTGTGAAAAAATCAGGCTCGTGAAAAAATTAGGGGCGTGAAAA
ATATAGGGTACGCTAGGCGCGTGGTTTGGCAGACTCTTAATTGAAACAAG
AGTGTCTTTTTTACTCTTTCTCTAAGTTTTTATTCAGTGTCAGGTATCTG
ATCTTTC
Run BLAST on NCBI

transcript from alignment at sc0000370:188181..188437

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020817 ID=TCONS_00020817|Name=TCONS_00020817|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0000370:188181..188437 (Clytia hemisphaerica)
GAAAGATCAGATACCTGACACTGAATAAAAACTTAGAGAAAGAGTAAAAA
AGACACTCTTGTTTCAATTAAGAGTCTGCCAAACCACGCGCCTAGCGTAC
CCTATATTTTTCACGCCCCTAATTTTTTCACGAGCCTGATTTTTTCACAC
GCCTAATTTTTTCACGCGCCCATATTTTCCAGGTGCCTGGaaaactctca
aaaaattaagtttagacatatattgcgagtataggtgatttctgtaccta
actcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011679XLOC_011679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020817-exon-sc0000370-1491911889:188181..188437TCONS_00020817-exon-sc0000370-1491911889:188181..188437Clytia hemisphaericaexon
TCONS_00020817-exon-sc0000370-1510915933:188181..188437TCONS_00020817-exon-sc0000370-1510915933:188181..188437Clytia hemisphaericaexon
TCONS_00020817-exon-sc0000370-1575043694:188181..188437TCONS_00020817-exon-sc0000370-1575043694:188181..188437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:188181..188437 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.5563	1.28038	0	0	0	0	0	0	8.35543	0.925091	0.914149	1.8987	0	0.418796	0	0	0.730572	0	0	0	0.787998	0	0	1.31708	0	0	0.762804	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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