TCONS_00020811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020811
Unique NameTCONS_00020811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020811 ID=TCONS_00020811|Name=TCONS_00020811|organism=Clytia hemisphaerica|type=transcript|length=258bp
NGGAGTTTTAATGACATATCCATAAAATGAAATGGACTTATATGGATTGA
ATAATAAAGTATTATAAGATTATAATCTGTGTATACCTACAACTGAACTT
GGCTTTGTCCTTGTATAACTTTGTGTGCGTAACCTGATGCCTTACACAAG
TAACAGTACAAATATGGATTGACGTGAAAtgtatataatgagatatggAT
TTGAATAGCGGTAAATGATAATGACTGAATGATATTTGGGGAACGTCTTT
TGACGCNN
Run BLAST on NCBI

transcript from alignment at sc0000370:45272..45529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020811 ID=TCONS_00020811|Name=TCONS_00020811|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at sc0000370:45272..45529 (Clytia hemisphaerica)
NNGCGTCAAAAGACGTTCCCCAAATATCATTCAGTCATTATCATTTACCG
CTATTCAAATccatatctcattatatacaTTTCACGTCAATCCATATTTG
TACTGTTACTTGTGTAAGGCATCAGGTTACGCACACAAAGTTATACAAGG
ACAAAGCCAAGTTCAGTTGTAGGTATACACAGATTATAATCTTATAATAC
TTTATTATTCAATCCATATAAGTCCATTTCATTTTATGGATATGTCATTA
AAACTCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011673XLOC_011673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020811-exon-sc0000370-1491911889:45272..45529TCONS_00020811-exon-sc0000370-1491911889:45272..45529Clytia hemisphaericaexon
TCONS_00020811-exon-sc0000370-1510915933:45272..45529TCONS_00020811-exon-sc0000370-1510915933:45272..45529Clytia hemisphaericaexon
TCONS_00020811-exon-sc0000370-1575043694:45272..45529TCONS_00020811-exon-sc0000370-1575043694:45272..45529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:45272..45529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.75883	2.29889	0.749702	34.3398	24.9122	41.06	34.7062	25.3364	23.8169	47.4869	31.9904	17.6147	22.896	6.96438	9.27513	8.0868	11.088	15.8584	21.0193	33.1485	32.5985	45.8101	58.655	19.8272	24.5032	41.8116	21.9558	27.8711	17.2606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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