TCONS_00020806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020806
Unique NameTCONS_00020806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020806 ID=TCONS_00020806|Name=TCONS_00020806|organism=Clytia hemisphaerica|type=transcript|length=1397bp
TACTGAATAAGGTTTTTGGTGAGGAAGAAATATCGACCTGACCAAGGCAA
ATCGATAAATTGTGACATTGCTTGAAGACATTGAATGCACAAATAATTTA
ACGACGCAAGCACAACCAAGGAATACAACGTCAAGTCTAACCAAAGATAA
CATCACAACTACACGATTAGACGATACCAACGACCAAACAACTTCTTCAC
CAAAACCTTTGCAAAGAAACCTCACAAGACAAACACCGTTACATCCGCAT
GAAAACATCACAACTGTATCGCTGAACGACACTCAACCAACATCAACGAT
TAAAACGACGTCGCCGATCAACAATCCTCGTGCAACGAATTTGTCTCAAA
CAAATCTAACAACGCCAGTGACAATAACACAGAACGACACTCGAACAACA
TATCCACCAGCAAATTTAACAACTGTACCAATCAACTACACTCGTCTAAC
AAACTCATctcaagaaaaaattacgacACCGACAGTAACGACGGAAGTCA
AAACAACGACGCAGTCAGGATATAATACTACAGTGACACAGACTGAAAAA
ACAAGAGAAACTACTAAAAAGGCTATAGAATCGACTTCACAGCCAACAAT
AACAAAAGCAACAAAACTGATAAGGACAACAGTTCTAAAAACATCCACAA
CGACGTATGCAGAATCACATCACGGAATGATTGCTGGTGTTATCATTGGT
ATTATCGTATCTTTCACAGTCGTGGTTGCCATCTTTATACAAAAGAATTT
CCCTGTACCAGGCTACACAGGAGGTGCAATGGAAGGATTAGAAGTACTGG
TGGGAGGATGTTTGACGTGTGAGTGTTGTAGAACAAACCATAAGAACAAA
GCGGAACACGTGCTTTCACAGATtctttgaaagttttggaagaaaattta
tCTGGAAGgatgttttttattgtttttttttagagtTTAGTTTCATCGGA
TTTCTAGTTTTTTATTGTTGTAAATATATGAATTtgacaaatttcaaaat
ctctCCATGGTGATGTACAGGCAAGGTTTTAAAGTGATATTAAGCCCCCA
TCCCTAATTTCAGTTCATCTGCCCACACTGCTCAATATCtatgggaagaa
attttggcgggaatctaatttggcgaatggccgaaaaaatttaatttggc
gggaacttaatttggatCCGCCAAAtcttcttcccgccaaaatttcttcc
cttaaggtagttaaAACAAAGTTTATGAATGAATCAAGCTCGGGCTAACT
AAAAAAGGTGATCAAGCTATAACATTTCAATATATCACCTCTGAAGGAAA
AAGGTAATATTGAGTGGACTCGGGTGGCTTAGGTTCACACTTTTCTTTAA
TCTCGTGATCATGTTTTAACGACAGTTTCCATGGGAGATCATATAAA
Run BLAST on NCBI

transcript from alignment at sc0000370:287116..289680-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020806 ID=TCONS_00020806|Name=TCONS_00020806|organism=Clytia hemisphaerica|type=transcript|length=2565bp|location=Sequence derived from alignment at sc0000370:287116..289680- (Clytia hemisphaerica)
TACTGAATAAGGTTTTTGGTGAGGAAGAAATATCGACCTGACCAAGGCAA
ATCGATAAATTGGTTATAATCTTTCTCAAAAAATTGTGTTCGAGATCTCG
GCAATGTACCATTTATATATCTGCAATGTATCATACAGATTGTAGATTGT
AATAAGTCAATTTATAACTTTAATTTCTTATATTTGCTACTTTGTAGTGA
CATTGCTTGAAGACATTGAATGCACAAATAATTTAACGACGCAAGCACAA
CCAAGGAATACAACGTCAAGTCTAACCAAAGATAACATCACAACTACACG
ATTAGACGATACCAACGACCAAACAACTTCTTCACCAAAACCTTTGCAAA
GAAACCTCACAAGACAAACACCGTTACATCCGCATGAAAACATCACAACT
GTATCGCTGAACGACACTCAACCAACATCAACGATTAAAACGACGTCGCC
GATCAACAATCCTCGTGCAACGAATTTGTCTCAAACAAATCTAACAACGC
CAGTGACAATAACACAGAACGACACTCGAACAACATATCCACCAGCAAAT
TTAACAACTGTACCAATCAACTACACTCGTCTAACAAACTCATCTCAAGA
AAAAATTACGACACCGACAGTAACGACGGAAGTCAAAACAACGACGCAGT
CAGGATATAATACTACAGTGACACAGACTGAAAAAACAAGAGAAACTACT
AAAAAGGCTATAGAATCGACTTCACAGCCAACAATAACAAAAGCAACAAA
ACTGATAAGGACAACAGTTCTAAAAACATCCACAACGACGTATGCAGGTA
AAATCTTAAGATTATTCGAGCGTTCCTTTACTTAGACACAAATATGCACT
ATACACCTTTTCAACCGTAGCCGCCAATTATCGCGCAGGTATTTTTTTGT
CCATTTTATCCACTCTAAAATCGTCCCAGTCTATTTTTCGCACCTAAAGA
CAGTAGAAAAAAGTGTTAAATAAGGATTGGATCGAGTTGGATTGTAAATT
AAATAATAGAGTGACACGCGCCTAACCACGCGACTACGATCGAAAAGGTG
TATTAGGAAGTTCTTTTAATCATAAGTTCCCTTTCAAATTTAATATTGGA
CAGTAGTACCACAATCAAAAGTAAACTGACTCAGACTTTTAACACGAATT
GTTGAAACGTTGGTCATTGACGACTTAGTGAAAAAATTGTTGAAAAGATT
TTGTTGAACAGAGAAAAGTTGGGATGTAAACTTTTTCAAGTTCCCTGTGT
CTACCCATTAAAACAATGAAAGGCCTAGTTGAATGAATGCCATTGTGATT
TGACCTTTGTGATGAAATGGGATCTCAAATTAGCATTGCCAGCGATCCAA
GAAATCAAATGCGAGGCAGGAAATCAGGTCACAAATTTGATGTTAGGGTG
GGCATGTGAGTTTGATTATATTCTGGTTATCTAGAAGAAATTCTTTTGAA
GTAGATAGAAGGTCCCATCGGGCGTTTTATGTTACAGAGCAGCGGGTATA
TACCCCCTGTGTCACAAACCCACTGGAACCCCAGCCCAACTGGAAAGTTT
GGTAAAAATTTCGTCCCCGGTGGGAAAAAACCCTGTAATTTCAGCCCCAC
TGGGAAATTGACTTTGATTTCGTCTGCATTCATAATATTCCATGTCTAAA
AATTGCAATCCAAAACAATCCCCACCGGATTTTTTACCCTTTGAACAATA
GAATTTCTATCCCCATTGAGATTTCAACAGGAATTTTTTTTCACTGAGGA
AAAAGTTCCATCGGGGCTATGAGACAGCTGTGTGTATATGTAATTATCAT
TAACTCCATATAACAAATTCTTGTCTTTAGAATCACATCACGGAATGATT
GCTGGTGTTATCATTGGTATTATCGTATCTTTCACAGTCGTGGTTGCCAT
CTTTATACAAAAGAATTTCCCTGTACCAGGCTACACAGGAGGTGCAATGG
AAGGATTAGAAGTACTGGTGGGAGGATGTTTGACGTGTGAGTGTTGTAGA
ACAAACCATAAGAACAAAGCGGAACACGTGCTTTCACAGATTCTTTGAAA
GTTTTGGAAGAAAATTTATCTGGAAGGATGTTTTTTATTGTTTTTTTTTA
GAGTTTAGTTTCATCGGATTTCTAGTTTTTTATTGTTGTAAATATATGAA
TTTGACAAATTTCAAAATCTCTCCATGGTGATGTACAGGCAAGGTTTTAA
AGTGATATTAAGCCCCCATCCCTAATTTCAGTTCATCTGCCCACACTGCT
CAATATCTATGGGAAGAAATTTTGGCGGGAATCTAATTTGGCGAATGGCC
GAAAAAATTTAATTTGGCGGGAACTTAATTTGGATCCGCCAAATCTTCTT
CCCGCCAAAATTTCTTCCCTTAAGGTAGTTAAAACAAAGTTTATGAATGA
ATCAAGCTCGGGCTAACTAAAAAAGGTGATCAAGCTATAACATTTCAATA
TATCACCTCTGAAGGAAAAAGGTAATATTGAGTGGACTCGGGTGGCTTAG
GTTCACACTTTTCTTTAATCTCGTGATCATGTTTTAACGACAGTTTCCAT
GGGAGATCATATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011669XLOC_011669Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020806-exon-sc0000370-1575043694:289619..289680TCONS_00020806-exon-sc0000370-1575043694:289619..289680Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1575043694:288884..289483TCONS_00020806-exon-sc0000370-1575043694:288884..289483Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1575043694:287116..287850TCONS_00020806-exon-sc0000370-1575043694:287116..287850Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1510915933:289619..289680TCONS_00020806-exon-sc0000370-1510915933:289619..289680Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1510915933:288884..289483TCONS_00020806-exon-sc0000370-1510915933:288884..289483Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1510915933:287116..287850TCONS_00020806-exon-sc0000370-1510915933:287116..287850Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1491911889:289619..289680TCONS_00020806-exon-sc0000370-1491911889:289619..289680Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1491911889:288884..289483TCONS_00020806-exon-sc0000370-1491911889:288884..289483Clytia hemisphaericaexon
TCONS_00020806-exon-sc0000370-1491911889:287116..287850TCONS_00020806-exon-sc0000370-1491911889:287116..287850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:287116..289680 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0298634	0.0291215	0.135252	0	0	0.127295	0.307153	0.503218	0.176157	0.0938042	0	0.0198889	0	0	0	0	3.89908e-10	0	0.412691	0.265755	0	0.0422507	0	0.124519	0.0641261	0.0858465	0	0.0437015	0.0994382	0.168853
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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