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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020800 ID=TCONS_00020800|Name=TCONS_00020800|organism=Clytia hemisphaerica|type=transcript|length=3641bpRun BLAST on NCBI protein sequence of TCONS_00020800-protein >TCONS_00020800-protein ID=TCONS_00020800-protein|Name=TCONS_00020800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp MANKDGVAELEEGDCLELEARPPVNVKTDNSYATVFKNLEELGKGKFGVVRun BLAST on NCBI transcript from alignment at sc0000370:214171..238839- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020800 ID=TCONS_00020800|Name=TCONS_00020800|organism=Clytia hemisphaerica|type=transcript|length=24669bp|location=Sequence derived from alignment at sc0000370:214171..238839- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000370:214171..238839- >TCONS_00020800 ID=TCONS_00020800|Name=TCONS_00020800|organism=Clytia hemisphaerica|type=CDS|length=22650bp|location=Sequence derived from alignment at sc0000370:214171..238839- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020800 vs. Swiss-Prot (Human)
Match: MYLK (Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4) HSP 1 Score: 271.166 bits (692), Expect = 5.755e-74 Identity = 133/304 (43.75%), Postives = 212/304 (69.74%), Query Frame = 3
Query: 252 IFAAKFVRKSASSKKEVLR-EIEMMNLLHHKRLIQLYDAYETTQDMIVIMELVTGGELFEKVVEDD-NLTERQVIRYMKQVIYGVQHMHRKNMVHLDLKPENILCLGGGKPGYEEIKLIDFGMTRVLDKDGDERVMGGTPEFIAPEVLKYDPVTVAADMWSLGVITYVLLSGLSPFMGDDDNETMENVSSGXXXXXXXXXXXXNLSDEVKLFIQDLLILNPTQRLTVAECLEHSWLRNEGSE---RKIDTSNLKKFIARRRWQRTMNTIKAVSRLAGGLSLFGNKGTGAHGAGRGNFLSAVRIQ 1148
++A KF + ++ +KE +R EI +MN LHH +L+Q DA+E ++++++E+V+GGELFE+++++D LTER+ I+YM+Q+ GV+++H++ +VHLDLKPENI+C+ K G IKLIDFG+ R L+ G +V+ GTPEF+APEV+ Y+P+ A DMWS+GVI Y+L+SGLSPFMGD+DNET+ NV+S ++ +DE F+ +SD+ K FI +LL + RL +CL+H WL + +K+ +KK++ARR+WQ+T N ++A+ RL+ + G G + + L+A +++
Sbjct: 1489 VWAGKFFKAYSAKEKENIRQEISIMNCLHHPKLVQCVDAFEEKANIVMVLEIVSGGELFERIIDEDFELTERECIKYMRQISEGVEYIHKQGIVHLDLKPENIMCVN--KTGTR-IKLIDFGLARRLENAGSLKVLFGTPEFVAPEVINYEPIGYATDMWSIGVICYILVSGLSPFMGDNDNETLANVTSA--TWDFDDEAFDEISDDAKDFISNLLKKDMKNRLDCTQCLQHPWLMKDTKNMEAKKLSKDRMKKYMARRKWQKTGNAVRAIGRLSSMAMISGLSGRKSSTGSPTSPLNAEKLE 1787 The following BLAST results are available for this feature:
BLAST of TCONS_00020800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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