TCONS_00020797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020797
Unique NameTCONS_00020797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020797 ID=TCONS_00020797|Name=TCONS_00020797|organism=Clytia hemisphaerica|type=transcript|length=827bp
CGGATTTGATCGAAAAACAGAAGGCTTCTTTGAAAGAGAAAACATAGATT
TACGTCTGAGAAAAGATTGTCGATAAGGCGACTAAGCTGCTCATTAAGCG
GCTTACGGGAGAGAAAATTAATCGACTTAAATAACGCTGGTATGAGAAAA
CTATAAACAGACTAACTGTAGGAAGGACAGGATAGGAAGTGCTTTCCTAG
TTGACATATAAAAAAGTGAAAGGAAAAATCACTTTAAAGATCCAGGTAGG
AcgtaaaaagagaaaaataacaaCTGAGACGAAAAAACAGACCTGGTTTA
GTGTATTGTGGTATAATAAGGACGATAACATTTCAAAATCTACACATTTT
TTGATTAGTTTCTGTGAGACATTATGAGAGTTCAGATGAATAACGAGACA
AAGATGGGACATTATTTAGAACGAAAACTAATCAGGGACCAGGAACGCAA
ACGACGCCAAGAGGAGCGACGCAAGAGCCGATCGTGTAGTCATGAAAATA
TCGTCATTGCAGTGAATGGAGAAACGATTGCCAAAGatgaaacattcgaa
aatacaatcaaaattttagtgattgaagaaaataaaagtGACTCGGACAG
TACTTCTAGTACTGACTGAAGAAGTTAATTTTTGGACGAGATGCTAAGAA
GGATATTATCATGTAAAAAATTCGCTGGTATTAGACACATGCATCGAAGA
TTTCATAAGCTTTTTAAAACACGTTTTTCTATATTCTTTTTGGttggttt
gattttatttttgaaaaaaataatttttaattataTATTGTAATTATCTA
TCTGTAAATAATATAATCTAAAACTTG
Run BLAST on NCBI

transcript from alignment at sc0000370:204445..206308-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020797 ID=TCONS_00020797|Name=TCONS_00020797|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at sc0000370:204445..206308- (Clytia hemisphaerica)
CGGATTTGATCGAAAAACAGAAGGCTTCTTTGAAAGAGAAAACATAGATT
TACGTCTGAGAAAAGATTGTCGATAAGGCGACTAAGCTGCTCATTAAGCG
GCTTACGGGAGAGAAAATTAATCGACTTAAATAACGCTGGTATGAGAAAA
CTATAAACAGACTAACTGTAGGAAGGACAGGATAGGAAGTGCTTTCCTAG
TTGACATATAAAAAAGTGAAAGGAAAAATCACTTTAAAGATCCAGGTAGG
ACGTAAAAAGAGAAAAATAACAACTGAGACGAAAAAACAGACCTGGTTTA
GTGTATTGTGGTATAATAAGGACGATAACATTTCAAAATCTACACATTTT
TTGATTAGTTTCTGTGAGACATTATGAGAGTTCAGATGAATAACGAGACA
AAGATGGGACNACTGAAGGGACCAAGTTGTCCGAGTTAAGGAGACATTCG
AGTAATAAAAGAGACTCCACTGTGTAATAATTTAACTCTGAAATGTATGT
ACATTTTTAAATCAAAAAGATGCGAAATTCAAAAGATCATGGGGAGTCTA
ACGTGATTTAACTCCGAGTCGCTATATTTTGTACTGCAGTACCGCTAAAC
GATATAATTCCCAGGGGAAACTTTCCAATCATAAACTCTAAGATGGAAAG
AGCAACAATAAAAATCATAATATCTGATGAAAAAGGGAATTCTTTGCAAA
TTTTGGAAAAATGATTTCGGGAATGTAGAGTTTTAGAGCTAAAGTTTCAA
GACAAGAGGTAAAAAGTTTCACCTTGACAAATCTATTACGTATGTTTGTT
AGCCTGCGGAAAATTTAAGATAACGTCTGTTGTTTTTATCATTATATTGA
TATATAATCGAATCAATTTTCCTCTAGGTCAACTGACGGCATTAGTGATT
GTGAATGTTTGAAAGGAAAATGACTTATCAAAACTGACCCGCCTCCAGGT
CCAGCCTCTTATAATACTTTCGTAGCCACAGGGTTTTTAATAAGTAGCAT
TATATCAAATAAGGTTATGAAAATTAATATCATAATTCGGATTTGATCGA
AAAACAGAAGGCTTCTTTGAAAGAGAAAACATAGATTTACGTCTGAGAAA
AGATTGTCGATAAGGCGACTAAGCTGCTCATTAAGCGGCTTACGGGAGAG
AAAATTAATCGACTTAAATAACGCTGGTTTGAGAAAACTATAAACAGACT
AACTGTAGGAAGGACAGGATAGGAAGTGCTTTCCTAGTTGACAATATAAA
AAAGTGAAGGGAAAAATCACTTTAAAGATCCAGGTAGGACGTAAAAAGAG
AAAATAACAACTGAGAAGAAAAAACAGACCTGGTTTAGTGTATTGTGGTA
TAATAAGGACGAATACATTTCAAAATCTACACATTTTTTGATTAGTTTCT
GTGAGACATTATGAGAGTTCAGATGAATAACGAGACAAAGATGGGACATT
ATTTAGAACGAAAACTAATCAGGGACCAGGAACGCAAACGACGCCAAGAG
GAGCGACGCAAGAGCCGATCGTGTAGTCATGAAAATATCGTCATTGCAGT
GAATGGAGAAACGATTGCCAAAGATGAAACATTCGAAAATACAATCAAAA
TTTTAGTGATTGAAGAAAATAAAAGTGACTCGGACAGTACTTCTAGTACT
GACTGAAGAAGTTAATTTTTGGACGAGATGCTAAGAAGGATATTATCATG
TAAAAAATTCGCTGGTATTAGACACATGCATCGAAGATTTCATAAGCTTT
TTAAAACACGTTTTTCTATATTCTTTTTGGTTGGTTTGATTTTATTTTTG
AAAAAAATAATTTTTAATTATATATTGTAATTATCTATCTGTAAATAATA
TAATCTAAAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011666XLOC_011666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020797-exon-sc0000370-1575043694:205980..206308TCONS_00020797-exon-sc0000370-1575043694:205980..206308Clytia hemisphaericaexon
TCONS_00020797-exon-sc0000370-1575043694:204445..204942TCONS_00020797-exon-sc0000370-1575043694:204445..204942Clytia hemisphaericaexon
TCONS_00020797-exon-sc0000370-1510915933:205980..206308TCONS_00020797-exon-sc0000370-1510915933:205980..206308Clytia hemisphaericaexon
TCONS_00020797-exon-sc0000370-1510915933:204445..204942TCONS_00020797-exon-sc0000370-1510915933:204445..204942Clytia hemisphaericaexon
TCONS_00020797-exon-sc0000370-1491911889:205980..206308TCONS_00020797-exon-sc0000370-1491911889:205980..206308Clytia hemisphaericaexon
TCONS_00020797-exon-sc0000370-1491911889:204445..204942TCONS_00020797-exon-sc0000370-1491911889:204445..204942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:204445..206308 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0574074	0	0.305473	0.254368	0	0.489408	0.346861	0.487091	0.725641	0.479373	0	1.16792	4.75491	3.96501	0.0765986	0.082202	1.20667	0.927601	28.6819	54.7906	2.94175	2.03049	11.7822	14.003	11.8762	16.0282	37.9415	7.05674	0.509741	0.305091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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