|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020795 ID=TCONS_00020795|Name=TCONS_00020795|organism=Clytia hemisphaerica|type=transcript|length=3110bp
GTtttaaaattccagccaaaattaTAGATAAAGTGTTATGTTAAGCATCA
TTATTTTGAGAATCAACCTTTAGAGATATACTAGGGTACCCAACTGAATT
AAAAGTATACAGATTTATAGAATTATTTTTGCAAGCAGAAATCTTTGTTA
AATTCTTTTAGATATAtgctaaaaataccaaaataaaaaataatggtTGT
TGGGTAGCTAAAAGAAATATTGaacatttttaaattgaaaaaaccctaaa
ataataacaaaatgtTGTTTAAAGCTTAcatatataaaatacaaaatata
acAATGACATTATGTCTCACTGTGACTGTCTTTAGTGGCTTTCACCAGCT
TTACCAGCAACCCGTTTAAATTCAGTCATGTTTGTTGCTCCTAGTGGAGC
TCCGATAATTTTCAAGTATTTCAAAACAGTTGTTTCTTCATCTCCTTGAT
TATTTGCAACAAAAATAACCAGATTtgtaacattttgaaatttgacaaat
CTCAAAGGAATGACTTTGCTTCCAGAAATATCATCTTCTGTCAAATCAAT
CTTTTGAACTCCTTCCATACGTTCAGCCTGGTCAAAATCTACAGAGCTTG
GTTGGTTAACAAAGAGTTTAATTAGTTTTGGGCCTTTCCCATCATTAGGA
GCATTGATTTTGAGGGAGTGGACTTTTACAGCTTGATTGAATTCAATTGT
TAAGATCAACTGCTCATCACAATCACTTTCTAAATATGTATCATtatcat
caaaaatatttgcATGAGTATGATCATCACTTTCATTCAAGCAATTGCAT
CCTGCTGAAAGAAAGAATGGTTTCAAATCTGCATAACCTTTAACATCTTC
ATTTCCATCATTTGCGGCAGCATCTGGCCCTGCATGTTGCTTTACTTTCT
CCACAAGAGTGTTTTGATCAGCACCCTTCATTTCGTCAATTTTGACTTTG
GCTCGGATAAAGATGAAAGTTGGCATAGACTGGACAGTGTACTTTGCAGC
AGTAACTTCATTCTTATCTACATCAACTTTTAGAAAGACAACATTAGGGT
GATTCAAGGCAAGACTTTTAAATACTGGAGCAATGCGCCTGCAAGGTCCA
CACCAGGTTGCATGAAAATCAACAACAACCAATTTTGCCCCAGCATTTTG
AAGTTCTGTTTCAAAGGTTGAATGATCATCGACATTCTTAATTGTTCCAG
CCATAGttgaaaatctcaaaatctttAGCAGATGTTATTCAAAGAATAAA
AGAAGTATTCCTTCCTTTTATGAGAAAATCTTCAAGCTTCTTTTGACTTT
CTTCAAGAAAAATTGTCTCGTCAGCTAGGCGCCACAACTTTGTCTATCCT
TTTGAAACCTGTACCTGAATGTAGAGAAATTGTCACTTCCTTGTTGAGAG
CATATTTTGTCAGATACTACGAATTAAAAAAGTTTAGCCGCTCCGTGAGC
TACCAGAAACGAGCTACAAATAATGACATAATCTTAAGTATTCTCGGAAg
ttgattggatgaaaaaattctttctcaacTTTTGAGCTGaaatcaaacaa
atcaaaaacaaacttcaatcTTCCAAAACCCAAAAGTGGAGTGGAAGATT
CAACAAGAAGAAGATCGCTCACAAAGCAAAAATAATCAGCATATAGGAAA
GAGAATGACAACAAAGAAGAAAGCTGATCGTAAAGTTGTTATATTGGGTG
AAAGTGGTGTAGGAAAGACTTCGCTTATACGAAGgTATATTGAAGGTACT
TACAATGAGGGAGGACCAAACACAATAGGAGCTGCATTTTTCCTAAAACA
ATGGAACGGTTATAATATTGCATTGTGGGATACTGCTGGGCAAGAAGAAT
ATTCTGGATTGACGAACTTTTATTGTCGAAATGCGAATGCTGTACTTCTT
TGTTATGACATGTATGATAAGAAAAGTTTTCTTCAATTAGATCAAAGACA
TTCCAGATTGTTAGAGACTGTATCTAACCAATGTGTAATGGTTTTTGTTG
GCACTAAACTAGATTTATTGAATAAGAAACTAAACGGAAAAACATATACA
CGTGAAGTGACTTTTGAAGAGAGTACACAACAAgctttggaatttagtga
ccgCTGGAGCTCTAAGAGACACCCTTTGGGTATGTTACCTTCATTTGAAA
CGAGCtccaaacaaaatcaaaacgtgAACGATGTGTTTGAATATATATTT
GAGACCATATTACCTTCATCTGCCAGGGCTGCACAAAGGACTCCTTCACC
ATCAGGATTGATACGTCTTGATCCAAACAGTAAAGAGGATAGTGGATGTC
ATGAGCAGACGAAAAGTAAATGTTGTCGTTCTGGTTAATAGGGGATTATT
TCAGTAAAAAAGGCGAATCCTTCAGTTATTGTAGAGGAAGTTTTTTGCCA
TGTTCTCTTGTAGAGAATTTGAGAAATACAGGGTGTGTCAGAACACGGCT
ACAAGTAGTTTTCCCATacacaaataaaaattttatactTGTATTGTATA
AAGTCGTGTTCTATAACACAGGACCTTTTTTGTGAAGGATAGCGGACTTA
AACCTTGCTAGCAATTAGAAGATGTTGTTCTATGGTTTATCATTGCATTT
GAGTTTTGCTGTTATTgacaaagaaaaagttaaaataaagaattttccAC
AACAGGGTTTTTACGCACATTCATTGTACCATTATAGAATATAACTTGTG
GGACATCCCATTTTtgagggagtttctaaacatcgaccagaaatgttgac
cacgaccagcgaccacgaccggcgaccagataaatttggattatcgagtt
tatctgctctctccaccatagaaaatatttaaatcaagtcctcagaatac
taaaaagtgacttttgaagtaaccagtcattttcttgacaaagtgacact
atttgacaaaaatattgacagggtcattaaATATGATGTCTGTAAGCTtt
gttacaccaaatattttaattatgcagaatgagatgcctttagtatgaat
agatatagaagttgtcagtaggaaaaaattgggaaggccagttttagaga
tatgaatctaatcaattattctattgtctttatgctgacaaaatgactaa
tttcgacaga Run BLAST on NCBI transcript from alignment at sc0000370:191042..196994- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020795 ID=TCONS_00020795|Name=TCONS_00020795|organism=Clytia hemisphaerica|type=transcript|length=5953bp|location=Sequence derived from alignment at sc0000370:191042..196994- (Clytia hemisphaerica)
GTTTTAAAATTCCAGCCAAAATTATAGATAAAGTGTTATGTTAAGCATCA
TTATTTTGAGAATCAACCTTTAGAGATATACTAGGGTACCCAACTGAATT
AAAAGTATACAGATTTATAGAATTATTTTTGCAAGCAGAAATCTTTGTTA
AATTCTTTTAGATATATGCTAAAAATACCAAAATAAAAAATAATGGTTGT
TGGGTAGCTAAAAGAAATATTGAACATTTTTAAATTGAAAAAACCCTAAA
ATAATAACAAAATGTTGTTTAAAGCTTACATATATAAAATACAAAATATA
ACAATGACATTATGTCTCACTGTGACTGTCTTTAGTGGCTTTCACCAGCT
TTACCAGCAACCCGTTTAAATTCAGTCATGTTTGTTGCTCCTAGTGGAGC
TCCGATAATTTTCAAGTATTTCAAAACAGTTGTTTCTTCATCTCCTTGAT
TATTTGCAACAAAAATAACCAGATTTGTAACATTTTGAAATTTGACAAAT
CTCAAAGGAATGACTTTGCTTCCAGAAATATCATCTTCTGTCAAATCAAT
CTTTTGAACTCCTTCCATACGTTCAGCCTGGTCAAAATCTACAGAGCTTG
GTTGGTTAACAAAGAGTTTAATTAGTTTTGGGCCTTTCCCATCATTAGGA
GCATTGATTTTGAGGGAGTGGACTTTTACAGCTTGATTGAATTCAATTGT
TAAGATCAACTGCTCATCACAATCACTTTCTAAATATGTATCATTATCAT
CAAAAATATTTGCATGAGTATGATCATCACTTTCATTCAAGCAATTGCAT
CCTGCTGAAAGAAAGAATGGTTTCAAATCTGCATAACCTTTAACATCTTC
ATTTCCATCATTTGCGGCAGCATCTGGCCCTGCATGTTGCTTTACTTTCT
CCACAAGAGTGTTTTGATCAGCACCCTTCATTTCGTCAATTTTGACTTTG
GCTCGGATAAAGATGAAAGTTGGCATAGACTGGACAGTGTACTTTGCAGC
AGTAACTTCATTCTTATCTACATCAACTTTTAGAAAGACAACATTAGGGT
GATTCAAGGCAAGACTTTTAAATACTGGAGCAATGCGCCTGCAAGGTCCA
CACCAGGTTGCATGAAAATCAACAACAACCAATTTTGCCCCAGCATTTTG
AAGTTCTGTTTCAAAGGTTGAATGATCATCGACATTCTTAATTGTTCCAG
CCATAGTTGAAAATCTCAAAATCTTTAGCAGATGTTATTCAAAGAATAAA
AGAAGTATTCCTTCCTTTTATGAGAAAATCTTCAAGCTTCTTTTGACTTT
CTTCAAGAAAAATTGTCTCGTCAGCTAGGCGCCACAACTTTGTCTATCCT
TTTGAAACCTGTACCTGAATGTAGAGAAATTGTCACTTCCTTGTTGAGAG
CATATTTTGTCAGATACTACGAATTAAAAAAGTTTAGCCGCTCCGTGAGC
TACCAGAAACGAGCTACAAATAATGACATAATCTTAAGTATTCTCGGAAG
TTGATTGGATGAAAAAATTCTTTCTCAACTTTTGAGCTGAAATCAAACAA
ATCAAAAACAAACTTCAATCTTCCAAAACCCAAAAGTGGAGTGGAAGATT
CAACAAGAAGAAGATCGCTCACAAAGCAAAAATAATCAGCATATAGGAAA
GAGGTAAGATAAGCTTTTTCTATAGAATACAGGTTTTTTAAAGAAAATAA
GGCTTCAATGGTCAAAATATTATTTTTGGCTGTTCTTATCCAGACGACCT
CAATCGACCGATTGAAATTTGATTGTCAAACGCAATCGAATCTCAATTGA
ACGTCAAAATTCTGGGTAATATTCGATTAGTTCGATTGTTGCTCGGCTGG
TTCGATCGTCGATTCCGTTCGATTGAGATCGTCTGGTCTTATCATCATCA
TCATAATAAACAAAAGCGTACAATTTTACGTCTCAATGACGTACGTACGA
AGACAAATGAAACACAATGATATAATAATATTGACAATGACTGAATGTTC
TTATTCAGTTAGCAGAGCAGAGACTTGCTGGAAGTCCAGGGGGAGAAATT
TTCGAAAAATTAACAAGCAACAACCTAGTATAATAGTACAGTACGTAGGG
AGGTTGAGGCTTGCACCTGCGGCATAAGGATGCAATCACAAATATCTTCG
TTTCGCGTCGCCCGACCGACTCTCGAAAATTGAGAAGAATTGAGTCGGTG
TTGTTTAAAAATTTTATTACTGCCGATTTTTTGCGAGCGATTTCTAGCGC
ATTCGCGGCATTTTGACTTTGTTTAAACAGATGCGCCATTTTGGGTTGGA
GATGTCACAGTGTTCAAAGGTCATAATTTGAAACCACCCATAACACAGTT
GTTTTTTGGCTGCTGGCTGGATGGCAGTTTCCTTCAAGAATATACTCCAA
AAATGGATAATGGAGGAAAACTCGAAAATTTTACCAACCGACCGACCGAC
CGACCGACTAACTTTTTAGACCCAACAAGGACGCTAAATGAAGATATTTG
TGATTGCCGCCTAACAAAAATAGGACTTTTGAAAAAAATCTTGAAACTTA
CTTACATAAATCCAGGAAGGAAAAGTTTTCTAGCACAAATTCTTTTTCCA
GCTTCAAGAGAATTTTTTCACGTTGGCTGACTTAAGTGTTCTACTATTTC
AGGATGTTAAAATAAGGCGGTCATCGAAAAATTGTTCTATTCGCGGCACC
CGTCCGCATCAAATTTTCCGCTGATTTCCGGTTTGGAGATGCGGAAAAAA
ATCTGGGAAAAGCAATTTGTTCTTTTAAAGTATAGCTTTTTTCTCAATTG
CTCTGAGGACCATCGAAAAATTGTTTTGCTCGCGTTACCACCCGCCCCTG
AGTTACTGGCGTGATTAAAAAAAAATCGGGAATGTTTTTTACCTCCCGTC
CGCCCGCATACATTTTTAACACCCGTTGCGACGCGAACAGAGCATTTTTT
TCGATGACCGCCTTTTAAGCACTTAAACTGAAAATATTTCCTTTAAACTT
ACAATATTTTTCAACCAATGTATTATTTTAACAAGATAAATGTTTTTTCT
TTCCAAATCTGAAAAGATCTTCAACCAAATAGATTCGGGTGGAAAGCGCT
AAGGGAAAATTAATGGTATGGTGACCCCCATCTGTAGCTTGCGCTACGGA
AAAATCCACTTGCCCCAAACTTCTCGCAAGGAGGTTTGACATTTTGCAAA
TGAGTTTGAAATTTCTACTGACCAGCCTAATTACTAAGAGTATCTTCAAA
TTAGCTGATAAACAAAGAAACCAAAGATTTTACAAAAAAATTAGACAATT
TCAGATTTTTCACCAGTAGATTCTTTCCATAGTAGTTCATCATGGAGTTA
AAACCTCCAAATATTCTTGCTTAACCCTTCCAAATCCAAGATATTAAAAT
TACAGATTTTCCAAATAAGAAAACTAAATTTTTGAGTTTACTCAAGAAAG
TTAGCAGAATAGTTAAAAATAAAAATTTTTTATTGAGAAAAAGAAACACA
ACAAAACGCTTTCTCATTTTTAAAGAAACACCTTTATATGAAGAAATTTT
GGTGGGAAGAAAATTTGGTGCATTTGCTTTGACAGATTCAGTCAAAATCT
ACCAATTTAAGTTCCTACCAAATTTATTTTTTCTCCTCATTCGCCAAATT
AATTTCCCGCCAAAATTATATTACTGCATTTATTGCCCAAAATATTTGCT
ATTTCAGGCATTAAAACAGTTTTTTTATTTAAATTGCGTTTTCTGACAAA
TATGCTCCTCATCTGCCAAATTTAATTTTTCAAGTCATTTGCCATATTAA
TTATATACCCACTAAGCATACTTTCTAAGCCTTCTAAAGGAAACTGCTGG
GCAGGGCAAATTTGTCCTCCATATTTTTGTAAACAGACTGAAACAAATCA
ATAATAAGAAAGGGTCTATTTAATAATATCATGTAAGATGTAACAGAACT
GCTATGCATTTTTGTAAAAAAAAAAAAAAACAGGCAAAAGGTATCATTAT
TATAATTCTTTCTCTAGAATGACAACAAAGAAGAAAGCTGATCGTAAAGT
TGTTATATTGGGTGAAAGTGGTGTAGGAAAGACTTCGCTTATACGAAGGT
ATTTATTATTATGCTGTATGGTATAAGCATATATTTGGCAAGAAAAATCT
GATATCGAAAATTATTCAGTCAAGCTTGATGATATTATGAATATCATTAA
AGCAAGATTGAATAATTTTGATATCCGATTTTTCACTTTGAATATAATTT
GGTTTATCGTTCACTAATTGAAAAATTCAAGTCAAATTTTTTTTTGAATG
TTTTAAATTCATTCGAAATTCATTTTGTTAGAAAGAAAAATATGAACAAC
AATAAAAGAAAAACATAAAGAGAAAAGATGGTATTTGAAATTTGACACAA
AGGTCCTTATAAAATATTTGCAGTTGATTGGAATATCTTTGCGCTTTTCT
TATGAGTCATAAAAAATAATTTTAAAATTTCAAAAATCTGGACTAACCTT
TCAATAAATGTTTTTGCAAAGCTGAAAGAAATGATTTAATGATACCTTTA
CTATAGGTTTTGAATTTTTTTTGTCAGGTATATTGAAGGTACTTACAATG
AGGGAGGACCAAACACAATAGGAGCTGCATTTTTCCTAAAACAATGGAAC
GGTTATAATATTGCATTGTGGGATACTGCTGGGCAAGAAGAATATTCTGG
ATTGACGAACTTTTATTGTCGAAATGCGAATGCTGTACTTCTTTGTTATG
ACATGTATGATAAGAAAAGTTTTCTTCAATTAGATCAAAGACATTCCAGA
TTGTTAGAGACTGTATCTAACCAATGTGTAATGGTTTTTGTTGGCACTAA
ACTAGATTTATTGAATAAGAAACTAAACGGAAAAACATATACACGTGAAG
TGACTTTTGAAGAGAGTACACAACAAGCTTTGGAATTTAGTGACCGCTGG
AGCTCTAAGAGACACCCTTTGGGTATGTTACCTTCATTTGAAACGAGCTC
CAAACAAAATCAAAACGTGAACGATGTGTTTGAATATATATTTGAGACCA
TATTACCTTCATCTGCCAGGGCTGCACAAAGGACTCCTTCACCATCAGGA
TTGATACGTCTTGATCCAAACAGTAAAGAGGATAGTGGATGTCATGAGCA
GACGAAAAGTAAATGTTGTCGTTCTGGTTAATAGGGGATTATTTCAGTAA
AAAAGGCGAATCCTTCAGTTATTGTAGAGGAAGTTTTTTGCCATGTTCTC
TTGTAGAGAATTTGAGAAATACAGGGTGTGTCAGAACACGGCTACAAGTA
GTTTTCCCATACACAAATAAAAATTTTATACTTGTATTGTATAAAGTCGT
GTTCTATAACACAGGACCTTTTTTGTGAAGGATAGCGGACTTAAACCTTG
CTAGCAATTAGAAGATGTTGTTCTATGGTTTATCATTGCATTTGAGTTTT
GCTGTTATTGACAAAGAAAAAGTTAAAATAAAGAATTTTCCACAACAGGG
TTTTTACGCACATTCATTGTACCATTATAGAATATAACTTGTGGGACATC
CCATTTTTGAGGGAGTTTCTAAACATCGACCAGAAATGTTGACCACGACC
AGCGACCACGACCGGCGACCAGATAAATTTGGATTATCGAGTTTATCTGC
TCTCTCCACCATAGAAAATATTTAAATCAAGTCCTCAGAATACTAAAAAG
TGACTTTTGAAGTAACCAGTCATTTTCTTGACAAAGTGACACTATTTGAC
AAAAATATTGACAGGGTCATTAAATATGATGTCTGTAAGCTTTGTTACAC
CAAATATTTTAATTATGCAGAATGAGATGCCTTTAGTATGAATAGATATA
GAAGTTGTCAGTAGGAAAAAATTGGGAAGGCCAGTTTTAGAGATATGAAT
CTAATCAATTATTCTATTGTCTTTATGCTGACAAAATGACTAATTTCGAC
AGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020795-exon-sc0000370-1575043694:195342..196994 | TCONS_00020795-exon-sc0000370-1575043694:195342..196994 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1575043694:192897..192977 | TCONS_00020795-exon-sc0000370-1575043694:192897..192977 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1575043694:191042..192417 | TCONS_00020795-exon-sc0000370-1575043694:191042..192417 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1510915933:195342..196994 | TCONS_00020795-exon-sc0000370-1510915933:195342..196994 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1510915933:192897..192977 | TCONS_00020795-exon-sc0000370-1510915933:192897..192977 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1510915933:191042..192417 | TCONS_00020795-exon-sc0000370-1510915933:191042..192417 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1491911889:195342..196994 | TCONS_00020795-exon-sc0000370-1491911889:195342..196994 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1491911889:192897..192977 | TCONS_00020795-exon-sc0000370-1491911889:192897..192977 | Clytia hemisphaerica | exon |
| TCONS_00020795-exon-sc0000370-1491911889:191042..192417 | TCONS_00020795-exon-sc0000370-1491911889:191042..192417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:191042..196994 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045454 | cell redox homeostasis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045454 |
cell redox homeostasis |
Blast
BLAST of TCONS_00020795 vs. Swiss-Prot (Human)
Match: TXNL1 (Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3) HSP 1 Score: 315.849 bits (808), Expect = 1.408e-98 Identity = 149/290 (51.38%), Postives = 199/290 (68.62%), Query Frame = -2
Query: 335 MAGTIKNVDDHSTFETELQNAGAKLVVVDFHATWCGPCRRIAPVFKSLALNHPNVVFLKVDVDKNEVTAAKYTVQSMPTFIFIRAKVKIDEMKGADQNTLVEKVKQHAGPDAAANDGNEDVKGYADLKPFFLSAGCNCLNESDDHTHANIFDDNDTYLESDCDEQLILTIEFNQAVKVHSLKINAPNDGKGPKLIKLFVNQPSSVDFDQAERMEGVQKIDLTEDDISGSKVIPLRFVKFQNVTNLVIFVANNQGDEETTVLKYLKIIGAPLGATNMTEFKRVAGKAGESH 1204
M G +K V F+ EL AG++L VV F CGPC RIAP F S++ +P VFL+VDV + + TAA + + PTF+F R KV+ID+ +GAD L EK+KQH D +N+ + KGY DL PF AGC CLNESD+H N + T+LESDCDEQL++T+ FNQ VK++S+K P++G+GPK +K+F+N P S+DF++AER E Q ++LTEDDI ++PLR+VKFQNV ++ IFV +NQG+EETT + Y IG P+ ATNM +FKRV GK GESH
Sbjct: 1 MVG-VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRVVGKKGESH 289
The following BLAST results are available for this feature:
|
