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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020775 ID=TCONS_00020775|Name=TCONS_00020775|organism=Clytia hemisphaerica|type=transcript|length=1483bp
TAGAAATACATTGAACAAACATTTGAAGCGACGCGCACAGACCTATCACA
TAATCACGGATGAATGGATAACCTAGTTGAACAGTTCGCATCGAAAGCCT
ACCCACCAACTGGCCCCATGGATCTTCATTATACAAATAAACAATCCAAT
TACACCAAGCACTCAGGCTTGAGACATCTGGATCCGGAGACTGATTTCAA
AGTGCGTCGTATTATTGCTCAAGTGAACGAGACAGCTCACATAGCGGTCA
ATGAACCCAGCATGGGGTTATTTCGGATACAGGAACACGTCCATCGCACT
TTACCGCAACTTGTTCAACGCAAAACTGAACTCaaagaaaatctacaaaa
aatcAACGACACGTTATATGATCTTAACCTTTCGGTTGACGTGATCGATT
CTATGTCCTATATCCCACACTTTACTCGCATACAAGAAGCTATGAAGACA
GCCATTGAGACAAAACGTAAACTCAACATCAAAGAAGAGCAAGAACGTAC
CCGACTTGAACTCAACGCAAAAAAAGCAGAACGTGCTAATCGGTCCCTAT
CACAAAATGAACCTGCGGAAGGGTTTATATGTCCAGTCTGTAAACACGCC
CTCCAGAATCAAGACGCCCTTATTTCACACTGGCAAGAACAACATAGTTT
GGACACTTTTGCAAATGATTGTTTCGAAGATGTTGCGATGCCTGTTTCCC
CTGAACCAGGGCAGTCTGAGGGCGGGGCAACTTCCACTAAGGGCGAAACG
CCCGAATATATAGTTGAGCAAGACAATGATTTAACAGTGATTGATATCCG
CCCTAATGAACGCCTCAATGAACGACAGTTTAGTGAATGCGAGGATGTGG
TTAAAAGTTTTGTGGACGAAGAAGATATACTGGAAGCTTCGTTGTGGTTA
CAAGGAACCAATGAGGATTCAGCAAGCCCTGCTTCATCAAGTGGTCGAGT
AAGCCCTGAAACTAGAACTGAAAACGTTGACGAAGAATCATCAGCTGGGG
ATATTTCTTAAAATCGAGAGATCCTTCGACCATAGTTTACTTCTCCCTCT
CTAAAATGTGTCAATCACGCATCTCGTAATGAATCAAATCCAGTGATGTG
AGACTGGTGACAGGttgtgaaaaaaagaaaaaaaattgaactgtTAGGta
ccttgtttttttttgattttacacTGGATAAAACAATGCCCTCGATTTTT
TGGGAGCAAATCAAGTTTCGGAATACAAAGGCATAACATTTGACCCATCC
GTTTCTTACGGTTTTTAGCGCGGGGTagttatctttaaataatttttgaa
atgactattgtttattaatgCATTTGATACtgaagttttgatttattttt
ctaaaacataTACATTTATAATTATATTGTCATTATCTTGTTATCTTTTG
AATACTGATACTGATACATACCGAGGGTTATACGACTCTTAATCTTTACT
TATTGGTCTACACCACTGACCTTTACATATCCC Run BLAST on NCBI protein sequence of TCONS_00020775-protein >TCONS_00020775-protein ID=TCONS_00020775-protein|Name=TCONS_00020775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MDNLVEQFASKAYPPTGPMDLHYTNKQSNYTKHSGLRHLDPETDFKVRRI
IAQVNETAHIAVNEPSMGLFRIQEHVHRTLPQLVQRKTELKENLQKINDT
LYDLNLSVDVIDSMSYIPHFTRIQEAMKTAIETKRKLNIKEEQERTRLEL
NAKKAERANRSLSQNEPAEGFICPVCKHALQNQDALISHWQEQHSLDTFA
NDCFEDVAMPVSPEPGQSEGGATSTKGETPEYIVEQDNDLTVIDIRPNER
LNERQFSECEDVVKSFVDEEDILEASLWLQGTNEDSASPASSSGRVSPET
RTENVDEESSAGDIS Run BLAST on NCBI transcript from alignment at sc0000370:121877..124341+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020775 ID=TCONS_00020775|Name=TCONS_00020775|organism=Clytia hemisphaerica|type=transcript|length=2465bp|location=Sequence derived from alignment at sc0000370:121877..124341+ (Clytia hemisphaerica)
TAGAAATACATTGAACAAACATTTGAAGCGACGCGCACAGACCTATCACA
TAATCACGGATGAATGGATAACCTAGTTGAACAGTTCGCATCGAAAGCCT
ACCCACCAACTGGCCCCATGGATCTTCATTATACAAATAAACAATCCAAT
TACACCAAGCACTCAGGTTTGTCTGAACCCATTTTCACTCTTTCGTTTTA
CGATTTGGGATTTTTTTGCTggaaattttgttaatattttcgtGAAAAAT
CATAGCGTTCTTTTTCACTTGActatttttgtttgattgtgGGAACTCTC
CGAAAAACTTGTATCCTAACTATTGTAAGTAGACTTTTGTAACTGCCATC
CAtggtaaacaaaaataaacatgcCAATCATGTAAGCTCTTCAATTCAGA
TCTCATCTTTATTGCTGCCTTTCTTCCTGGGGATCAGTTTCAAACAGTAC
ACTATATGTACCTGTCAATATTGTGAAGTGGACACGTTTTATGGGCCCTT
CAGTTtgtatttatttaaaaattttatctataactcgaaatttccacaAC
TCGAACAAAATGGAGAAACATTGACGTCACTGTACTTATAAAAGACGTAC
CTTCAGGTCGAAAGAGTTTGAAATGAGGAAGATGAGATCTATTGAAGTTT
GTTCCCCGTTTGGACTGCCCAGTGGTCAACTATTTGAAAGATTGAAAGAG
CTAAACAATAGACAATGCCAACAAATAGATTAGATTGTTATAGCTTTTTA
TACTTCCTAATGTTTGTGTCATATTTACACTGGACTTTTTCTATCTATTC
CAGGCTTGAGACATCTGGATCCGGAGACTGATTTCAAAGTGCGTCGTATT
ATTGCTCAAGTGAACGAGACAGCTCACATAGCGGTCAATGAACCCAGCAT
GGGGTTATTTCGGATACAGGAACACGTCCATCGCACTTTACCGCAACTTG
TTCAACGCAAAACTGAACTCaaagaaaatctacaaaaaatcAACGGTAGG
GTGTGCTCTTGATCTTGCGGCTAGAAGTCCGATTTGGTGGGTTTTCAACC
ATTTTAGTGGGAAATTGAATTGATATCTCTAAAAGTACCATATTGCAACT
CTTAATAAGCAAGGTggtgaaattcaaaattaaaagaGTTTTCGTTTAAC
CAATACAATTGTCTTTGTGAAAAGTGGCGAGTTTACCATCACGATGTTTT
AGTTCTAAttacagaaaaaattgaattaaagtggttcgaattagcgagag
ttgtCTGCCTTTAcgaaaacataactttttgttaaatCTACTGCATGTTG
TATTTTTTATTGAACCTTCTTCTTAACACCATTCCACCAGACACGTTATA
TGATCTTAACCTTTCGGTTGACGTGATCGATTCTATGTCCTATATCCCAC
ACTTTACTCGCATACAAGAAGCTATGAAGACAGCCATTGAGACAAAACGT
AAACTCAACATCAAAGAAGAGCAAGAACGTACCCGACTTGAACTCAACGC
AAAAAAAGCAGAACGTGCTAATCGGTCCCTATCACAAAATGAACCTGCGG
AAGGGTTTATATGTCCAGTCTGTAAACACGCCCTCCAGAATCAAGACGCC
CTTATTTCACACTGGCAAGAACAACATAGTTTGGACACTTTTGCAAATGA
TTGTTTCGAAGATGTTGCGATGCCTGTTTCCCCTGAACCAGGGCAGTCTG
AGGGCGGGGCAACTTCCACTAAGGGCGAAACGCCCGAATATATAGTTGAG
CAAGACAATGATTTAACAGTGATTGATATCCGCCCTAATGAACGCCTCAA
TGAACGACAGTTTAGTGAATGCGAGGATGTGGTTAAAAGTTTTGTGGACG
AAGAAGATATACTGGAAGCTTCGTTGTGGTTACAAGGAACCAATGAGGAT
TCAGCAAGCCCTGCTTCATCAAGTGGTCGAGTAAGCCCTGAAACTAGAAC
TGAAAACGTTGACGAAGAATCATCAGCTGGGGATATTTCTTAAAATCGAG
AGATCCTTCGACCATAGTTTACTTCTCCCTCTCTAAAATGTGTCAATCAC
GCATCTCGTAATGAATCAAATCCAGTGATGTGAGACTGGTGACAGGttgt
gaaaaaaagaaaaaaaattgaactgtTAGGtaccttgtttttttttgatt
ttacacTGGATAAAACAATGCCCTCGATTTTTTGGGAGCAAATCAAGTTT
CGGAATACAAAGGCATAACATTTGACCCATCCGTTTCTTACGGTTTTTAG
CGCGGGGTagttatctttaaataatttttgaaatgactattgtttattaa
tgCATTTGATACtgaagttttgatttatttttctaaaacataTACATTTA
TAATTATATTGTCATTATCTTGTTATCTTTTGAATACTGATACTGATACA
TACCGAGGGTTATACGACTCTTAATCTTTACTTATTGGTCTACACCACTG
ACCTTTACATATCCC Coding sequence (CDS) from alignment at sc0000370:121877..124341+ >TCONS_00020775 ID=TCONS_00020775|Name=TCONS_00020775|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000370:121877..124341+ (Clytia hemisphaerica)
ATGGATAACCTAGTTGAACAGTTCGCATCGAAAGCCTACCCACCAACTGG
CCCCATGGATCTTCATTATACAAATAAACAATCCAATTACACCAAGCACT
CAGGCTTGAGACATCTGGATCCGGAGACTGATTTCAAAGTGCGTCGTATT
ATTGCTCAAGTGAACGAGACAGCTCACATAGCGGTCAATGAACCCAGCAT
GGGGTTATTTCGGATACAGGAACACGTCCATCGCACTTTACCGCAACTTG
TTCAACGCAAAACTGAACTCaaagaaaatctacaaaaaatcAACGACACG
TTATATGATCTTAACCTTTCGGTTGACGTGATCGATTCTATGTCCTATAT
CCCACACTTTACTCGCATACAAGAAGCTATGAAGACAGCCATTGAGACAA
AACGTAAACTCAACATCAAAGAAGAGCAAGAACGTACCCGACTTGAACTC
AACGCAAAAAAAGCAGAACGTGCTAATCGGTCCCTATCACAAAATGAACC
TGCGGAAGGGTTTATATGTCCAGTCTGTAAACACGCCCTCCAGAATCAAG
ACGCCCTTATTTCACACTGGCAAGAACAACATAGTTTGGACACTTTTGCA
AATGATTGTTTCGAAGATGTTGCGATGCCTGTTTCCCCTGAACCAGGGCA
GTCTGAGGGCGGGGCAACTTCCACTAAGGGCGAAACGCCCGAATATATAG
TTGAGCAAGACAATGATTTAACAGTGATTGATATCCGCCCTAATGAACGC
CTCAATGAACGACAGTTTAGTGAATGCGAGGATGTGGTTAAAAGTTTTGT
GGACGAAGAAGATATACTGGAAGCTTCGTTGTGGTTACAAGGAACCAATG
AGGATTCAGCAAGCCCTGCTTCATCAAGTGGTCGAGTAAGCCCTGAAACT
AGAACTGAAAACGTTGACGAAGAATCATCAGCTGGGGATATTTCTTAAAT
GGATAACCTAGTTGAACAGTTCGCATCGAAAGCCTACCCACCAACTGGCC
CCATGGATCTTCATTATACAAATAAACAATCCAATTACACCAAGCACTCA
GGCTTGAGACATCTGGATCCGGAGACTGATTTCAAAGTGCGTCGTATTAT
TGCTCAAGTGAACGAGACAGCTCACATAGCGGTCAATGAACCCAGCATGG
GGTTATTTCGGATACAGGAACACGTCCATCGCACTTTACCGCAACTTGTT
CAACGCAAAACTGAACTCaaagaaaatctacaaaaaatcAACGACACGTT
ATATGATCTTAACCTTTCGGTTGACGTGATCGATTCTATGTCCTATATCC
CACACTTTACTCGCATACAAGAAGCTATGAAGACAGCCATTGAGACAAAA
CGTAAACTCAACATCAAAGAAGAGCAAGAACGTACCCGACTTGAACTCAA
CGCAAAAAAAGCAGAACGTGCTAATCGGTCCCTATCACAAAATGAACCTG
CGGAAGGGTTTATATGTCCAGTCTGTAAACACGCCCTCCAGAATCAAGAC
GCCCTTATTTCACACTGGCAAGAACAACATAGTTTGGACACTTTTGCAAA
TGATTGTTTCGAAGATGTTGCGATGCCTGTTTCCCCTGAACCAGGGCAGT
CTGAGGGCGGGGCAACTTCCACTAAGGGCGAAACGCCCGAATATATAGTT
GAGCAAGACAATGATTTAACAGTGATTGATATCCGCCCTAATGAACGCCT
CAATGAACGACAGTTTAGTGAATGCGAGGATGTGGTTAAAAGTTTTGTGG
ACGAAGAAGATATACTGGAAGCTTCGTTGTGGTTACAAGGAACCAATGAG
GATTCAGCAAGCCCTGCTTCATCAAGTGGTCGAGTAAGCCCTGAAACTAG
AACTGAAAACGTTGACGAAGAATCATCAGCTGGGGATATTTCTTAAATGG
ATAACCTAGTTGAACAGTTCGCATCGAAAGCCTACCCACCAACTGGCCCC
ATGGATCTTCATTATACAAATAAACAATCCAATTACACCAAGCACTCAGG
CTTGAGACATCTGGATCCGGAGACTGATTTCAAAGTGCGTCGTATTATTG
CTCAAGTGAACGAGACAGCTCACATAGCGGTCAATGAACCCAGCATGGGG
TTATTTCGGATACAGGAACACGTCCATCGCACTTTACCGCAACTTGTTCA
ACGCAAAACTGAACTCaaagaaaatctacaaaaaatcAACGACACGTTAT
ATGATCTTAACCTTTCGGTTGACGTGATCGATTCTATGTCCTATATCCCA
CACTTTACTCGCATACAAGAAGCTATGAAGACAGCCATTGAGACAAAACG
TAAACTCAACATCAAAGAAGAGCAAGAACGTACCCGACTTGAACTCAACG
CAAAAAAAGCAGAACGTGCTAATCGGTCCCTATCACAAAATGAACCTGCG
GAAGGGTTTATATGTCCAGTCTGTAAACACGCCCTCCAGAATCAAGACGC
CCTTATTTCACACTGGCAAGAACAACATAGTTTGGACACTTTTGCAAATG
ATTGTTTCGAAGATGTTGCGATGCCTGTTTCCCCTGAACCAGGGCAGTCT
GAGGGCGGGGCAACTTCCACTAAGGGCGAAACGCCCGAATATATAGTTGA
GCAAGACAATGATTTAACAGTGATTGATATCCGCCCTAATGAACGCCTCA
ATGAACGACAGTTTAGTGAATGCGAGGATGTGGTTAAAAGTTTTGTGGAC
GAAGAAGATATACTGGAAGCTTCGTTGTGGTTACAAGGAACCAATGAGGA
TTCAGCAAGCCCTGCTTCATCAAGTGGTCGAGTAAGCCCTGAAACTAGAA
CTGAAAACGTTGACGAAGAATCATCAGCTGGGGATATTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020775-exon-sc0000370-1491911889:121877..122042 | TCONS_00020775-exon-sc0000370-1491911889:121877..122042 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1510915933:121877..122042 | TCONS_00020775-exon-sc0000370-1510915933:121877..122042 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1575043694:121877..122042 | TCONS_00020775-exon-sc0000370-1575043694:121877..122042 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1491911889:122680..122871 | TCONS_00020775-exon-sc0000370-1491911889:122680..122871 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1510915933:122680..122871 | TCONS_00020775-exon-sc0000370-1510915933:122680..122871 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1575043694:122680..122871 | TCONS_00020775-exon-sc0000370-1575043694:122680..122871 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1491911889:123217..124341 | TCONS_00020775-exon-sc0000370-1491911889:123217..124341 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1510915933:123217..124341 | TCONS_00020775-exon-sc0000370-1510915933:123217..124341 | Clytia hemisphaerica | exon |
| TCONS_00020775-exon-sc0000370-1575043694:123217..124341 | TCONS_00020775-exon-sc0000370-1575043694:123217..124341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:121877..124341 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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