TCONS_00020773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020773
Unique NameTCONS_00020773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020773 ID=TCONS_00020773|Name=TCONS_00020773|organism=Clytia hemisphaerica|type=transcript|length=1017bp
GTAAAACCAAAAGTTATAGATTATTATTATCActtaaaaaatttacattt
ttgggacattgaaagaatatttttagttGGTTGAGCcaaatactgaattt
gaatggTATTCTATGTTACTTATAATTTTTTGCGGTACCGCTTCGGCTGC
GGATACATGCGATGTAGTTGAAGGTTTAGAAGGATGTGCTTGTATCATGA
GAAACAGTTCAAAAGTTGTTTCACTTCAAGACCTTGTTGGTAATAATACG
AATGGCAAACCTATCAGATTTGACCGAGCCGATGGAAACAAGAAAGACTG
GTACTTTGCTTATCACCCATGTGGAACCTTTGATATGTTTTTGAACCGAC
CCAATCCAAGAGTTGGAGATTATCCTTGCAAAGATACTTCCGTTGGACGG
TTCACTGACAATGCAAATCATATCTGTGAAGGCCTTGGTGATTTGTCGGA
AAGTAAATTTGAATTCAATGAAGGTTATGAATATCCTGTTGTTGCACCAC
TATCTGTTGTTTTCAGAAACACCAGCTCAAGTCACGGTGCACGTATTTCA
TTGGTTTGTAATGAGACTCTTTCAGTAGAAGATACCGAGTTCAAATATCT
CAATGTCACCGAAGGACCAACCGAATATTATCATTTCTCATTGACTGGTC
CCTGTAGTTGCCCAGGAGGATGTAAATACATTAAACCAAAGCCCAAACCT
TCAAATGCTATGACCAACTTGCCGAATCTCGGTTTCATTTTCGTCACAGC
AATCATGATGGTGTTGTCTAAATTGTAATCATATCTAGTTCTCTGAAGAC
ATAAGCATCaaagaatagaagaaaaaaCAACGAGTCAttggaaatgaaaa
ttttctcccTGGCTGGAgaaagattttctttctttgttaaaATACGATAA
ACTACAATTTTTGTATTCTTATATTGatttaatgttatgtttacTTTTTG
TATTACTGTAGTATTTCTACTGTTTTAGACAAAGTTGTGCtaagagaaaa
aaaagtgtacaaattaA
Run BLAST on NCBI

transcript from alignment at sc0000370:114392..119116+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020773 ID=TCONS_00020773|Name=TCONS_00020773|organism=Clytia hemisphaerica|type=transcript|length=4725bp|location=Sequence derived from alignment at sc0000370:114392..119116+ (Clytia hemisphaerica)
GTAAAACCAAAAGTTATAGATTATTATTATCActtaaaaaatttacattt
ttgggacattgaaagaatatttttagttGGTTGAGCcaaatactgaattt
gaatggTATTCTATGTTACTTAGTAAGTATGATAGTTCAACTTATATTTG
CtgtaaattttatttgaaagtatttGAAGCTGTTCATGTGTCATTGTCAT
TGTCAAGCATGTATTTTGATGTGATTCCTTGAACTATTATGTTTTTTCAT
ATGTAATTCttttaaacactttttccaaCTGGCTGTCAGTAAGATTGCAA
AATGCATATAGCTTTTGATAGAGTTTGAATTATATTGCAATTTTTCactc
attgaaaaatattagtGAATAGTATGTTTCTGAAAAGAAAACGTtaaagt
gaagatgaaaaatgaagaagaaaaaaatcaactaaaattaaaatatttta
catcATCAGTGAATATTCAATGTCGACAAATAAAATTCAAGATAATTTGA
ATTCTCAGGTTTTTTACTTAGAACACTGAAAGATCTTATGGATGCAGGTA
AATGGAAATAAAACAGTCCAAATCTAATAAACACTTCTTAAACATACAAC
ATCCCAAAGGCAGATGCCCCATACGTAGGCTAAGCTGACCGTATGTGACA
TATACtcatttcagaattttttcttttcaataaaggtATCTattaaatat
tgataaaaacaaTGGAAACTCTTATCCATGGGAAAACCAGATTGTCAGAC
GTGATATTTCATTATGTGCATTTTATTGTCAAAGAGTGTTTAAAAGTTAT
CATTAACAATCTTTGAAGAGGTCATTTTTGAAGAGATATTTTTGTGAcgc
tcattgagtttaaagccttgagggggctagagaggaatctttaacctttc
tcaagcaaatAAAAGTGAAGCCTGCTGAAAGATTTGCGCCGCATTTAAAa
tgatggattgaatctagctTTTTCATTGTTTATAAGCGGCAAATCTTTCG
ACAGTAGCGAtaggttttactttcaatctggcgtttgtgtgaaaacctgg
cgcattttggatgggaaataagtggcttcgttTCCTATCTAAGAGTTTCA
GGTCTAGCTACTACTGTGGGGCTTTGAAGGTCACGCTACTCATTTGATCA
TAGAGATGAAAAAAGTTTGGGtcgatttatttaaaaaaaaagtttgttca
cAGTCATCATAAGATCAAATTTTAATCATGGAAGTCACAATTGAAAGACT
CAACTTTTCTTAGTCAATTATTATATGACCAAAGTTTTTCTACGAATTCG
AAATCGTTTGTTAAAAGATCACTTCAAGATGACTCTTTTGACTCTTTCAC
CTCCGTGCGATATGTTCAGTGTCGCTCTCATGATCCTATGAAACGAAAGT
TGTTactcaaaattctaaaaacaggTCCTGTCAAGCATGTCCTTGATGTT
GACAATAGAAAATGGAGGCATTTTATTTGTTTACGTAAAagcaacaaaat
atttttactttaagTATAAGAacattaaatgtttttaaacatagaatttt
aGCCAAATATTCCCTGATCATAATATATAAGAATGTTCTGAGAATCAGTT
TTTCTCGGAAGGTTCTGGGTTAAAGGTTAATTTCGGTCTGATTATAAATC
TTAAGATAAATACTCTATGTATCCTCTGTTTACTGGTTAAAGGATTATGG
GTATTACCCTATGTTTCATGTTCTTAGTAATAGTGTTTTAGTAGTGAAGG
AAGTCATATCCAAACAGATTTTCTCGTCTCATGACATATGACTTGTATGG
tattttgtttgaaataaaaaggtGTGTTTTTGTTGTTCCATATCACATTG
AATAAGCATATCAAAAAGTCATATCAAAAAGTACTAACTCAACTCAAAGT
TAACTAACAAGAGAGTTTTGAACAAAACCATGGATCGTGTTTTAGGTTTA
GTATTATTTTTTACAGTAATTTTTTGCGGTACCGCTTCGGCTGCGGATAC
ATGCGATGTAGTTGAAGGTTTAGAAGGATGTGCTTGTATCATGAGAAACA
GTTCAAAAGTTGTTTCACTTCAAGACCTTGTTGGTAATAATACGAATGGC
AAACCTATCAGGTACAGATTTTTGTATTATTAATTTGACCTATCTTTTCC
GGTTAAATTGACTAAATATTGTGGAAATAATCCCTCCCCCCTAGTATCAA
TATTGATGAGTGGAGAGGCTGCCGCCATGCTCAGAACAACACTGGTATTA
GGGGCGAAGggatttttcaggaaattgccacatattttgtcactgattgt
agcttACAGGTTTTTATAATAACAACTACAACTGCATTTTTTTTCGCCAA
ATCGAACGcaacaattaaaattttaatcgctaaagattttgaaatcaGAT
AAGCTTTTAAGACTTTCAATTGCATTTTCTTACTTTTAGATTTGACCGAG
CCGATGGAAACAAGAAAGACTGGTACTTTGCTTATCACCCATGTGGAACC
TTTGATATGTTTTTGAACCGACCCAATCCAAGAGTTGGAGATTATCCTTG
CAAAGATACTTCCGTGAGTGTTTTTACGATTTTCTCATCTTCTTGTATGA
GGACactcaattttatttcaatgtctATCTGGCGTCCAGATAGCGTTAGA
TATGTACGTTGAAACAACTATGTGTGCGTCAGCTATTATTCATATTCTAT
CTCGTCTAAATCTGATGATTATATTGTAAGTTTATGTTGATTCGGGTTGA
GTAATTATCCCGATTATATCGATTATCCCCTTGTTACAGAATTTTCAGGA
AGCCAAGTATTTCATAGCGATTCGGACCCCAATTTAAATATTGTTGGCTT
TAAGTTGTATTTCACAACCTGAAAAAGAAATACTAaggcgaaaattaaaa
aaatgtagtgtttccggaatgcgggtgaaggaaaaaagctctcattcggc
cggccggaaaaatttttattttgctttttttgataacctataagatcatt
gaaatagaactttaaagatacaTAACTTTTATGCACAAACAGTAAGCCcg
gaatactaatgtatcaactattaacgaagtctgcggccgggtcagaaaat
aattttttagcgGTTTCCgaaaacactacattttttcattttcccctgaa
tgaaatattatatatagTCATAATTTTAATCAACTTGTGGTAATCTTTCA
TGTTCATTTTTAGGTTGGACGGTTCACTGACAATGCAAATCATATCTGTG
AAGGCCTTGGTGATTTGTCGGAAAGTAAATTTGAATTCAATGAAGGTTAT
GAATATCCTGTTGTTGCACCACTATCTGTTGTTTTCAGGTAATTTATTAT
CGTTTAATTTTGTAGTAATCAAACAAAATACCTTTTAACCGTGTAGTGAT
TTTTCTACTAGCTTTATCAGTCCGTTtcctttcttttcattttgttcTCT
TGCTATGTAGAAACACCAGCTCAAGTCACGGTGCACGTATTTCATTGGTT
TGTAATGAGACTCTTTCAGTAGAAGATACCGAGTTCAAATATCTCAATGT
CACCGAAGGACCAACCGAATATTATGTAAGTTTGGATTTGTTTTTCagtg
tgttttgtttttactaAACATTTTCCTTTTGGTTACAAGCTTGATTTTGC
CATTAGGGGTATTTCGAAGGACAAAGAGCTAGCTAGTTCCTAAAGTAAAG
TAAAGCTAGCTAATGGCTTCACATCTAGTCACATCCCATGCTTCTCGCTT
CCCCAACTAATTTCCCAACGAGCTAAGAGATTTACTGTATAGATTTACAA
GGAAATCCTGTAGAAAAGAGTCACTAATTCCATTGACATCATGTTCAGGA
GAATAGTCCGCTTGTATGAGGGATTTCAATGAGCACACCAAGTTTGGAAC
ATACTGAAATAATATAAGCAGCACTTTTACCCAACGTTTGCGACAACAGG
AACCGTATAGTTTGATCTATTCCAATTTGCTACCAAAGGAATGTGAGAAA
TCTGATATTGAACGTCCGAAAGTTTTCATCTGATTAATTTCATTCATACC
TCTGTTCTTTATTGCAGCATTTCTCATTGACTGGTCCCTGTAGTTGCCCA
GGAGGATGTAAATACATTAAACCAAAGCCCAAACCTTCAAATGCTATGAC
CAACTTGCCGAATCTCGGTAAGTAAagcattgtttactttgtgatTTATT
ATTTGATTACAATACAGTATTTCAAATAACGAGTATTCCaagatataagt
tatttttTCCTCGATGTTGATGTCTGAATAATACTCGTGAAAAAGATGGG
GTATAATTCTTTCTTGGAAATGGTTCCTATTTTTTGACCGTGTCGCCGAT
AGATTTTTCCAGGAATCTATTGAACTCTTCGACCGAAGATTTAAGTTTAT
TAtgtgtttttaaatattcttcTCTTTCTACGATTTTAGGTTTCATTTTC
GTCACAGCAATCATGATGGTGTTGTCTAAATTGTAATCATATCTAGTTCT
CTGAAGACATAAGCATCaaagaatagaagaaaaaaCAACGAGTCAttgga
aatgaaaattttctcccTGGCTGGAgaaagattttctttctttgttaaaA
TACGATAAACTACAATTTTTGTATTCTTATATTGatttaatgttatgttt
acTTTTTGTATTACTGTAGTATTTCTACTGTTTTAGACAAAGTTGTGCta
agagaaaaaaaagtgtacaaattaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011659XLOC_011659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020773-exon-sc0000370-1491911889:114392..114513TCONS_00020773-exon-sc0000370-1491911889:114392..114513Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:114392..114513TCONS_00020773-exon-sc0000370-1510915933:114392..114513Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:114392..114513TCONS_00020773-exon-sc0000370-1575043694:114392..114513Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1491911889:116358..116502TCONS_00020773-exon-sc0000370-1491911889:116358..116502Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:116358..116502TCONS_00020773-exon-sc0000370-1510915933:116358..116502Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:116358..116502TCONS_00020773-exon-sc0000370-1575043694:116358..116502Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1491911889:116831..116954TCONS_00020773-exon-sc0000370-1491911889:116831..116954Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:116831..116954TCONS_00020773-exon-sc0000370-1510915933:116831..116954Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:116831..116954TCONS_00020773-exon-sc0000370-1575043694:116831..116954Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1491911889:117605..117729TCONS_00020773-exon-sc0000370-1491911889:117605..117729Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:117605..117729TCONS_00020773-exon-sc0000370-1510915933:117605..117729Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:117605..117729TCONS_00020773-exon-sc0000370-1575043694:117605..117729Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1491911889:117852..117966TCONS_00020773-exon-sc0000370-1491911889:117852..117966Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:117852..117966TCONS_00020773-exon-sc0000370-1510915933:117852..117966Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:117852..117966TCONS_00020773-exon-sc0000370-1575043694:117852..117966Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1491911889:118459..118558TCONS_00020773-exon-sc0000370-1491911889:118459..118558Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:118459..118558TCONS_00020773-exon-sc0000370-1510915933:118459..118558Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:118459..118558TCONS_00020773-exon-sc0000370-1575043694:118459..118558Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1491911889:118831..119116TCONS_00020773-exon-sc0000370-1491911889:118831..119116Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1510915933:118831..119116TCONS_00020773-exon-sc0000370-1510915933:118831..119116Clytia hemisphaericaexon
TCONS_00020773-exon-sc0000370-1575043694:118831..119116TCONS_00020773-exon-sc0000370-1575043694:118831..119116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:114392..119116 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.988329	0.843814	7.55189e-05	0	0.541512	0.675013	9.77249	14.7104	4.75927	3.13663	0	3.79447	3.97909	1.11266	0	0	1.06699e-05	0	0	0	0	0	0	0	23.636	30.5648	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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