TCONS_00020771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020771
Unique NameTCONS_00020771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020771 ID=TCONS_00020771|Name=TCONS_00020771|organism=Clytia hemisphaerica|type=transcript|length=1469bp
ATTTGTACAACACATTTAGTAAAGAGCTGAGAAAAACGCAATTCTTTACA
AATCAAGATGGTTTTCTTTGCTGatcttCTGCGTATGGACGTCAAACCGG
AACCGGTCGACAAAAAGAAAGGCTGCACAGAAGCGTCCGAATACAGCAAA
ATGGCATTACAAGGCGGACACAAAGATTTATTGAAGCTAGAGGGTATTCA
AACGAACGGAGTACACgatgaaaaaccaaaaaagaaaGTCAACAGCGATG
AAATgtcagaatttacaaaaatgtccATCGATGGTGGTCATAAAGATATA
TTACGAACAGACAGACCTACCGAACCCGAAACAGTACGTAAACTGAAAGC
ATGCGATgctgaaaatttatcaaaatataacaAACTCGCAAAAACAGGAG
GTCATAAAAATTTATTGAAAATGGACGCTAAACACGATATCGATACACGA
AGAACAAAAGGATGTCACAATCCTTCTGATTATAGTAAAATGGCTCTTCA
AGGCGGTCATAGAGATTTATTGGTCATTGAAGAGAACAAGCCAGCTTCAA
GACGAATGGACTACCAACGGCAAGGAGGTGATTGGTTTGAACATAACAAT
AACAACGAcatcaaaaataataataaaaacgaAACCACTAGACCCGCATC
TGCCAGTGGGCGACGACCAGCTCCCACAAACGGACATCAAAAtcaatcga
acggaatcctTCCAGCGGGAATCGAACAAGCATCAAAAGGGGGAAAGAAA
CGATTCGAACCATCGCAACGAAGTCAAGCACCCTTTGCAACGTACTTTTA
GATATCGAGTATGTTTCGTTGTTGCGCAATGGATTGTTTTGAGTGCTTTC
ATAAGCGCATAATCTATAGCGCATGTTCTTTTTAAACGCATTCTGTATCA
TAGCTTCTAGTTTGTTCTTTGCTTATAAACATTATCAAGTCTTATATATT
CATTCTATAGTTAGGGAAAGTCACATGGAAGGGTTTAGACCAGGAGTTTA
CAGGGGGGTAAATGACGTCAAATACCGGTTTTAGAAAACCTGACTTGAGA
CAAAAACCCGAGACATTTGATTTGTATCAACTCTGGTAAACTCtaactca
attttcattcaCGTAGGTTCTAAGAAAAAGATTGCGAATCATATTCTGTA
TAATATCACACTTcttatttccaaatctttaaaattcaaaattttcagta
atatttttttgtccatGTTCTGCCATTTTTCTCTTCCTTTTCTTCGACAT
TTAATAGTTTTTGCCTTTATCGTGAACAATTAGTTTTTAAtagtatttat
tattttttcaaggtCTTCATTGAGGTAAAaccttcttttaaaatttttat
ttgtgaTACTATACCATTTATCATTTTGTGTAAAGTAACAACATTTTAAC
ATTGAAAAATAATGTATTTATATCCAAtgacatttcaaaaataaattgtt
GTGTTTTCCATGTTGTAGC
Run BLAST on NCBI

transcript from alignment at sc0000370:80955..85212+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020771 ID=TCONS_00020771|Name=TCONS_00020771|organism=Clytia hemisphaerica|type=transcript|length=4258bp|location=Sequence derived from alignment at sc0000370:80955..85212+ (Clytia hemisphaerica)
ATTTGTACAACACATTTAGTAAAGAGCTGAGAAAAACGCAATTCTTTACA
AATCAAGATGGTTTTCTTTGCTGGTAAATTTGCATACAAGATTTAGATTC
TTTTTATTCTCGAAATCATCTTAATTTAATCATCTTTTGACTTTATATTT
CTATCGTATGGGATAATTTTCTCATTTCTTTTGCATTCAACAACTTATGT
TAGTTTAGTTTAGCGAAGAAAGTATTTAGTTTCTGGAGGTTTATTATTTC
TGGGGTAGATAGCGGTGAAAGCAATTCGACCTGATCAATGAATTAACTTC
TTAAACTGAATTAACTATGAATTAACTTCTTAAAATTAACTTGtcaaaat
ttgatctgtttaaATTCCACTCggtttttagaaaattttaaccTATAATA
ACGGAGCGAAACTCTTGAACCTTTTCTACCACTCGATCCTGAAGTCTCAA
CTGAtcgctttgtttttttttcttttcagatcttCTGCGTATGGACGTCA
AACCGGAACCGGTCGACAAAAAGAAAGGCTGCACAGAAGCGTCCGAATAC
AGCAAAATGGCATTACAAGGCGGACACAAAGGTACATCCTTTCTATATTT
ATTTAGCATAACAAACTTAAATTCGTCAATCGTtcaaatttattaaattt
ttgtgtttttttttgtctgaaTGACCAAATTTAAAGTTACAAAGTAGTAT
ATTCGTCAATTCCCTTTCAATGTCATGTCAGGTCTGTATCATTTTAATCT
TGTGTGACCGAGTTTGATAAGGGTGTCACCCAATTCTCAAGATTTTTAGC
CTGTTTTCTTTTATCCCCTTGTAGAGTCTATATCCTACgcggatagccca
gtaatctaggattTTAGACAGTGTCTTGATTATTTTCACAGGGCCAACGT
ATGAACGGAACATTTTGAAGGAGTATTGATTTTGAACGTGAACCGGTGTG
AGGCTGACGCTTTTAGACCCCCCATCGCTCTGTTTCTCTATCTTTAAATT
ATGAGTTCGTTTTACTCATCCACTTGGATAATTCTCCCAAGTTTGTCCAC
CCTACAAGATTTTGATATTCGTCTGCTTTTAGATTTATTGAAGCTAGAGG
GTATTCAAACGAACGGAGTACACgatgaaaaaccaaaaaagaaaGTCAAC
AGCGATGAAATgtcagaatttacaaaaatgtccATCGATGGTGGTCATAA
AGGTAAGAAATCATCAATGTCGAAAGCTAACTCTCTAGCAACTGACTTTT
TCCTAATTCTAAGTGTTAGTCGTCTTATATTATAAAATTCAAGCAAATGA
cggcggggggggggcgtaTGTACGAGAGTCGCCAACACTGAAATAACACC
GGTTTCAAATCACCGACAATACTGACCATAAAAACTCGTAAAACCCTTAT
TCTTTCCCCACATGACACGTTAACCGAAAATAGGGAGGACTAATACTTAC
CATCTTCAAACCCATACGAACACTTCACATCCATCCCTTCAAAGGTCGGG
GAACTTTTAATCGCACTTTAAACTCACTGGTCTGAAAACGACATCTTTTT
TTGGAATGGTGGTGGTAACCCTCTCTTATTCTTTTGGCAGATATATTACG
AACAGACAGACCTACCGAACCCGAAACAGTACGTAAACTGAAAGCATGCG
ATgctgaaaatttatcaaaatataacaAACTCGCAAAAACAGGAGGTCAT
AAAAGTAAGTCAATTTACTTTACTAACTTAGTTACTGCACTCAGAACTTC
TTCTTAGGGTGGGTTTTACACCACCAAGATGTTGAAAAGGGAAAGACGTG
CGcgcttttgatttttaaagaagtcGCTGTAATGTGTATGCAAGTGACGA
AAATAGATATTGAAGACGTTGTATTGTCAATCTTTGACGTTAGAAATACG
AAATGAAATCTCTactttttcaaactgttttgTAGTTGAACAAGTGAGGT
GTTTCCACGAAAGTTGAATTTTTCGTGATCCTTTTATGTTTTCTTCACCA
GATTTATTGAAAATGGACGCTAAACACGATATCGATACACGAAGAACAAA
AGGATGTCACAATCCTTCTGATTATAGTAAAATGGCTCTTCAAGGCGGTC
ATAGAGGTAAACTACTAATTTATTGCTTCGAAATAGAATGGCTtgcatat
tatttttttttgggcCCACGTTGTATCGGTATCTAATGGTTAAAACCTCG
TCTTTATTCTTACGTACCAAGGTGAATGaagatttgattttaatttcaat
catcaaaaaatccgataagaagaaaaaaagacgaaaaggATTCCCTGGTT
GTTATTTGGTCGGGCTAAGTTTTAGTGGCCTGGTCTCAATTAGAATTTCG
AAAACCGTTGAGGAGGTTGGAAGTGGCAGATGTCGGAAAAATTATTCTCC
AAAAATAATTGATCATCAATAAACTCTTccttttcctattgaaatttgtg
ttacaaaaaagtaaataatttATCGAAACGAAGTCTATAGTCTCCTCGTG
TTTTACGCGTCCCACAAAAGAAATGGGATTTCTCCAATCTGATCgatgaa
aaataacaattttataCGTTTTATCTTTCtacggaaaaaaatatttaaat
cttCTCTGACTAGACATCGAAGAAGGTTTAAGGggcatcaaaaatatttt
tgttgaaaatgggTGAAAATCAAGAAGCTCCTCGAATTCCTCGAATTcct
caaaaagttttcaaatttactGAATCGCGTTTCTGGCAAAAGGAAGCACA
CAGAGATAAAAGTTagatttcattctttttctaCTATCAGGGTCCTATTT
TGCATGCATGTGATCTGTTAAGTCAGGGTGGTCGAAGATGCAGCATATCG
CTACATATTTTCGTTAAGTTAGGTGAAATGAAGTTTAGTAGTGTTGCAAA
ATAAAGTTCTTTTGGCTTGATTGCTTAAATCTTCTAAACCAAAACTTTCC
TTATTTACAGTAGAccagtgaagaaaaaaacacacCGGGTTACATCACTC
TCAATCAAtataatcttcattttcaatttctttcaataGATTTATTGGTC
ATTGAAGAGAACAAGCCAGCTTCAAGACGAATGGACTACCAACGGCAAGG
AGGTGATTGGTTTGAACATAACAATAACAACGAcatcaaaaataataata
aaaacgaAACCACTAGACCCGCATCTGCCAGTGGGCGACGACCAGCTCCC
ACAAACGGACATCAAAAGTAAGTCTTTGTTTCATTTGATATCTTAGAAAC
TTAGACCTAAATGGTAATTATGGAATTTCTAGACTAGGAACGACTCatga
tttcttttatttttgatgatAGATTTTTCTGTCTGCTGCCGAAACCCTAG
AGGAAAAAAGTTTAGGCcagctttctttgtttttattgattaccccgttt
actttgaaatttcgGAGGCTTAAATCAAGGCAGAGGTATGctatataata
tattattccttatcaatgttcttaatttcagtcaatcgaacggaatcctT
CCAGCGGGAATCGAACAAGCATCAAAAGGGGGAAAGAAACGATTCGAACC
ATCGCAACGAAGTCAAGCACCCTTTGCAACGTACTTTTAGATATCGAGTA
TGTTTCGTTGTTGCGCAATGGATTGTTTTGAGTGCTTTCATAAGCGCATA
ATCTATAGCGCATGTTCTTTTTAAACGCATTCTGTATCATAGCTTCTAGT
TTGTTCTTTGCTTATAAACATTATCAAGTCTTATATATTCATTCTATAGT
TAGGGAAAGTCACATGGAAGGGTTTAGACCAGGAGTTTACAGGGGGGTAA
ATGACGTCAAATACCGGTTTTAGAAAACCTGACTTGAGACAAAAACCCGA
GACATTTGATTTGTATCAACTCTGGTAAACTCtaactcaattttcattca
CGTAGGTTCTAAGAAAAAGATTGCGAATCATATTCTGTATAATATCACAC
TTcttatttccaaatctttaaaattcaaaattttcagtaatatttttttg
tccatGTTCTGCCATTTTTCTCTTCCTTTTCTTCGACATTTAATAGTTTT
TGCCTTTATCGTGAACAATTAGTTTTTAAtagtatttattattttttcaa
ggtCTTCATTGAGGTAAAaccttcttttaaaatttttatttgtgaTACTA
TACCATTTATCATTTTGTGTAAAGTAACAACATTTTAACATTGAAAAATA
ATGTATTTATATCCAAtgacatttcaaaaataaattgttGTGTTTTCCAT
GTTGTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011658XLOC_011658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020771-exon-sc0000370-1491911889:80955..81027TCONS_00020771-exon-sc0000370-1491911889:80955..81027Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:80955..81027TCONS_00020771-exon-sc0000370-1510915933:80955..81027Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:80955..81027TCONS_00020771-exon-sc0000370-1575043694:80955..81027Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1491911889:81434..81535TCONS_00020771-exon-sc0000370-1491911889:81434..81535Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:81434..81535TCONS_00020771-exon-sc0000370-1510915933:81434..81535Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:81434..81535TCONS_00020771-exon-sc0000370-1575043694:81434..81535Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1491911889:82037..82156TCONS_00020771-exon-sc0000370-1491911889:82037..82156Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:82037..82156TCONS_00020771-exon-sc0000370-1510915933:82037..82156Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:82037..82156TCONS_00020771-exon-sc0000370-1575043694:82037..82156Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1491911889:82545..82658TCONS_00020771-exon-sc0000370-1491911889:82545..82658Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:82545..82658TCONS_00020771-exon-sc0000370-1510915933:82545..82658Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:82545..82658TCONS_00020771-exon-sc0000370-1575043694:82545..82658Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1491911889:82956..83060TCONS_00020771-exon-sc0000370-1491911889:82956..83060Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:82956..83060TCONS_00020771-exon-sc0000370-1510915933:82956..83060Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:82956..83060TCONS_00020771-exon-sc0000370-1575043694:82956..83060Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1491911889:83994..84171TCONS_00020771-exon-sc0000370-1491911889:83994..84171Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:83994..84171TCONS_00020771-exon-sc0000370-1510915933:83994..84171Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:83994..84171TCONS_00020771-exon-sc0000370-1575043694:83994..84171Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1491911889:84436..85212TCONS_00020771-exon-sc0000370-1491911889:84436..85212Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1510915933:84436..85212TCONS_00020771-exon-sc0000370-1510915933:84436..85212Clytia hemisphaericaexon
TCONS_00020771-exon-sc0000370-1575043694:84436..85212TCONS_00020771-exon-sc0000370-1575043694:84436..85212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:80955..85212 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6.84347	9.58878	0	0	22.6006	19.1619	4.40349	5.60367	335.455	167.701	1.47283	0.850623	0	0.172479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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