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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020766 ID=TCONS_00020766|Name=TCONS_00020766|organism=Clytia hemisphaerica|type=transcript|length=2203bp
TCAGTAAAGAAACACATCAGAAAAACATTAACAAACGAAATAGATTTGGT
GTGTGGTGATGCCACGTCAAATTTTGAGAATATTGGACGTTTATTGCAAA
TCATGTAATTTCTTACTGTTGAACTATCGGAAAGGTGGTAAAGGACATCT
CATTAAATGTCACCTTCACAAGGTCATTAAAGATTACACTCAAGTCAAAG
GAATTTGCCCAAACTGTGGCGTTCAGTGGGCCAGAGAGACCATCATAAAA
AATCGACCAGCGTTGAAAATTATTGGAGATCGCGTGTTCTGGAAGTAAAC
ATTTGTCTAGATAAGATTCTAAACTGGAAATGAGGAGTCACATTGTGGTG
GATTTTGGTGACAATGTTACATCACTCTTCTATTGGTTTGATGTGGACTC
TCTCTCCACCTTGaaagaaaaagttcaaaaacgtTATGAAATTCACATCA
CTGATCAAATTATTAAACATGGAAATACCGTTCTAAGTGAAGAATCTTTC
CGAAAGCTTTATAAGAATCGCTTCAAAGAAGATGTAGATTTAAAAGTTGA
TATTCCAGACCCGTCACTAATTCAAAGTGAGCGACGTAAGGTTTTCAAAC
GTGGTTGTGAAGGTATAATCCATATTTCTTCTTATAAAGAACAAGACGGA
CTGTGTCCcaatctaactttcaagccgTCTAATTTATCCTGGACCATAAA
AGACTTGAAAAGTTACATTAGTACCAAAACCAACATGTCGGTGGAGCCAA
TGTGTCTTTTATTTAACAACATCATTCTATTGAGTGACGAAGAATTATGT
GTTGATTATTTCCTTGATTTGAAAGGCTCTTCACGTCCGATTTCTTTGAA
GTTGAAGATGCTACCATCCGTTATTGCCAGTGATGAAATGTTTCAGCACC
GTTTATATTATGATTTGTGTTTGTCCCCGATACATGTAACGATACCAAGT
TTCGGTGAAGTTGATGATTTCGTTCTATACCCGTTGGCTTCCATTGGTCA
GATTGGTCGACCAGCCGTAATGAAATCTTTAATTGAATCTCTATATCGAA
TCCCTTATGGAGAACAAGAATTGTTTTATGAAGGACAAGCATTAAGTGAT
AACCGCTACCCACAAAAAAATGTTGGTAATGTCCTTGAGCCAATTTATTA
CAAACTTGTTGTTTTTTCAAGACGAAGCAAAGAGCTGGCATTGGTTTACG
AACAAAATAACATTAGGCCTTTACATCCAATTCATATAGCAAGTTTCGAA
TGTGACCATATTTGGGAGTATAATTATCAAGGGAAATCAGAGGAAAGTAT
TGTTCAGTTCATTGAGGATTCTATGAAAATCCCACAAagtaaacaatatt
tttttctggatGGTAGTGTAGTTAGTATTAGTGAATTGATTGAGGAAAAT
ACACGAGCTATTGAAACATTGAAAGTCAAACTAGCTGTTCAAGTCGATGA
CGACGAGCTAGAATTATTAAAAGTTGTACAAGAGCTGCAAATCAGTCGAG
TTCGTTCAATTGTTCTGAAACATCCAAACAACGaaccATATCAAAGACAT
TCGtgatgtaaaatttcaaattgatagAGAGAAAGGAATTCCACCTCATT
TGCAGAGtttgttttatgaaaacaaGGAACTTAAAGATGAAGCAGAATTA
ATCTACATGAACCCAAAGATGCTTTATGAGTCTTTAACATTCAATCTCGT
CATAAAACCTGCAAATGAAGTTGAATTATTTGTCGATGGTAATGTCCTGG
ACGAATCGATAACAATAAATATACTCGAAACGACCAGTGTTGGTAAGCTC
AAGGAAATGATCAGTGAACGATCAGGAGTCCCTCAATCTCTTATCATCCT
AGGAACAAGACATCAACCATATATTGTCGATGGTGAAAATGATAGGATCT
ACGAATGTCACTTTCAAGATAATATCGTAATAGTGAGTAAAAAGGTATTT
GTATCGCTCATAAAAGTTCACGAAGATGTCATTGTGAAAGAGAATTATTT
TATACGAGATTTTGAACACGATAACGTCAAAACACTTCTTGAGGACATGA
AATATCGATATTTTGATCAAGGGATTGTCTCTATGAAAAAGAACGAATGG
AAATTGAGTACTTTGTTAAAGAACGTTGGTGAATCTGAGTTTGTTTTGGT
GTTGAAACCCAAAACTGAATGCAATATTCTTTGAACGTATCAATTAATTT
ATA Run BLAST on NCBI protein sequence of TCONS_00020766-protein >TCONS_00020766-protein ID=TCONS_00020766-protein|Name=TCONS_00020766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MRSHIVVDFGDNVTSLFYWFDVDSLSTLKEKVQKRYEIHITDQIIKHGNT
VLSEESFRKLYKNRFKEDVDLKVDIPDPSLIQSERRKVFKRGCEGIIHIS
SYKEQDGLCPNLTFKPSNLSWTIKDLKSYISTKTNMSVEPMCLLFNNIIL
LSDEELCVDYFLDLKGSSRPISLKLKMLPSVIASDEMFQHRLYYDLCLSP
IHVTIPSFGEVDDFVLYPLASIGQIGRPAVMKSLIESLYRIPYGEQELFY
EGQALSDNRYPQKNVGNVLEPIYYKLVVFSRRSKELALVYEQNNIRPLHP
IHIASFECDHIWEYNYQGKSEESIVQFIEDSMKIPQSKQYFFLDGSVVSI
SELIEENTRAIETLKVKLAVQVDDDELELLKVVQELQISRVRSIVLKHPN
NEPYQRHS Run BLAST on NCBI transcript from alignment at sc0000370:54885..58625+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020766 ID=TCONS_00020766|Name=TCONS_00020766|organism=Clytia hemisphaerica|type=transcript|length=3741bp|location=Sequence derived from alignment at sc0000370:54885..58625+ (Clytia hemisphaerica)
TCAGTAAAGAAACACATCAGAAAAACATTAACAAACGAAATAGATTTGGT
GTGTGGTGATGCCACGTCAAATTTTGAGAATATTGGACGTTTATTGCAAA
TCATGTAATTTCTTACTGTTGAACTATCGGAAAGGTGGTAAAGGACATCT
CATTAAATGTCACCTTCACAAGGTCATTAAAGATTACACTCAAGTCAAAG
GAATTTGCCCAAACTGTGGCGTTCAGTGGGCCAGAGAGACCATCATAAAA
AATCGACCAGCGTTGAAAATTATTGGAGATCGCGTGTTCTGGAAGTAAAC
ATTTGTCTAGGTAAGATTTCATATGCATACTCTTCTCTCttttttcttta
cctttttATTTCTTGATATGATTATAAGATGGGGTATTATTCCGAGGTGG
AACCTCCAATTAGGCGACACCATCAGGGAATAGGGTTGGTGTCCGCTATT
TAGAAGTGTCCGCCCTTTAGAAACAATTGAGCAATTGGATTGTTTAAGAA
ATAAAAGTTTGGATAGATCAATCCTGTCTATTTTTTTAAGTCTGCCCAGT
TTAACCGTCGATGTAATTAGAGAGGAAAAAGTAGGGTTTCGGTCAGTTTT
TGCAAAAAGCTTTGTCCGCTaccttaaagaaagaaattttggcgggaatt
taatttggcgtatcgttaaaaaagttttttcagagggaatttaatctGGC
GGTTAacatttttgtgcaaaaaacgctgttaaaaaaggaaaaaccctgaa
atagcacacatttgggagaataaatagagcaatttaaatttggcgggaat
taaatttggcggattttggccaaatccgccaaatccgccaaattttcttc
cctccaaaatttttttctttaaggtAATTGAAGGAttcgctaattgagtg
tccacCTTCAAGAAGCTTTTTTGTTACCTGAAACAATAATAAACCTGTAA
TTAGGACAAAACACCGCCTCGCTGCGCTCTATCAATGTGTCTAGTAAACA
GGGTGTGGGGTTGGAATCGTACCTCTATTTATCAAAAGTAACGTAAAATC
AGTTATTTAGTGGAAGATAATCCGGAAACAAATAGTTAACGtaacataca
cgcttttttataagaacgtttgtctgaatcgcagaccctTATAGATACAC
TTCCTATGTAGGTGGGATTTTCATAAAAAGGAAACCATAATTCGTacaaa
aaaggttttgaaaataaaaccacTTATTATATTTTGTTAGTTCACTGGCT
CTTGTCTTGAAACTCATGCTGCAAACTGGTTAAATATccaaaatctttct
tttgaaCACTTTTACCATAAGAAAaattgttaagaatattttatatGTCC
ttagatttggaaaaaaaaattctatgaatACGTTACCCGGCTAAACCAAA
AAAACActaatcttataaaaaagcatgtacTTAGATAGTGAAGCTCCCtt
cttattattattttcattgaagaaaaaatattcttcTATCTTTTGTTATA
GATAAGATTCTAAACTGGAAATGAGGAGTCACATTGTGGTGGATTTTGGT
GACAATGTTACATCACTCTTCTATTGGTTTGATGTGGACTCTCTCTCCAC
CTTGaaagaaaaagttcaaaaacgtTATGAAATTCACATCACTGATCAAA
TTATTAAACATGGAAATACCGTTCTAAGTGAAGAATCTTTCCGAAAGCTT
TATAAGAATCGCTTCAAAGAAGATGTAGATTTAAAAGTTGATATTCCAGA
CCCGTCACTAATTCAAAGTGAGCGACGTAAGGTTTTCAAACGTGGTTGTG
AAGGTATAATCCATATTTCTTCTTATAAAGAACAAGACGGACTGTGTCCc
aatctaactttcaagccgTCTAATTTATCCTGGACCATAAAAGACTTGAA
AAGTTACATTAGTACCAAAACCAACATGTCGGTGGAGCCAATGTGTCTTT
TATTTAACAACATCATTCTATTGAGTGACGAAGAATTATGTGTTGATTAT
TTCCTTGATTTGAAAGGCTCTTCACGTCCGATTTCTTTGAAGTTGAAGAT
GCTACCATCCGTTATTGCCAGTGATGAAATGTTTCAGCACCGTTTATATT
ATGATTTGTGTTTGTCCCCGATACATGTAACGATACCAAGTTTCGGTGAA
GTTGATGATTTCGTTCTATACCCGTTGGCTTCCATTGGTCAGATTGGTCG
ACCAGCCGTAATGAAATCTTTAATTGAATCTCTATATCGAATCCCTTATG
GAGAACAAGAATTGTTTTATGAAGGACAAGCATTAAGTGATAACCGCTAC
CCACAAAAAAATGTTGGTAATGTCCTTGAGCCAATTTATTACAAACTTGT
TGTTTTTTCAAGACGAAGCAAAGAGCTGGCATTGGTTTACGAACAAAATA
ACATTAGGCCTTTACATCCAATTCATATAGCAAGTTTCGAATGTGACCAT
ATTTGGGAGTATAATTATCAAGGGAAATCAGAGGAAAGTATTGTTCAGTT
CATTGAGGATTCTATGAAAATCCCACAAagtaaacaatatttttttctgg
atGGTAGTGTAGTTAGTATTAGTGAATTGATTGAGGAAAATACACGAGCT
ATTGAAACATTGAAAGTCAAACTAGCTGTTCAAGTCGATGACGACGAGCT
AGAATTATTAAAAGTTGTACAAGAGCTGCAAATCAGTCGAGTTCGTTCAA
TTGTTCTGAAACATCCAAACAACGGTACCATTATTtgtgaaatttcattt
tctgagattcatcaaagaatgaaaatttcagaattGGAATATCTTATATT
CAGAAAACATTGTGTTGGTTTATCGAAAAATACTTGCGTCCTTCTCCATG
ACGATAAAGAGCTTACTTTCGCTGATGATCTTTACGGTTTGTTGGTAACA
GAAAATGGGAATTCCTTAGAATCGAACCTGGTTCTAACATTATTTGTTTA
TGTCGAGGATAAAACCCTTTTTGAAGAAGCAGATaccttttgtttgaaat
atgaCATGAAACTTTTGAAACGAGTAAATATCAGTTTTCTTACCGGTCAA
TTCTCatttgatattttacagaaccATATCAAAGACATTCGtgatgtaaa
atttcaaattgatagAGAGAAAGGAATTCCACCTCATTTGCAGAGtttgt
tttatgaaaacaaGGAACTTAAAGATGAAGCAGAATTAATCTACATGAAC
CCAAAGATGCTTTATGAGTCTTTAACATTCAATCTCGTCATAAAACCTGC
AAATGAAGTTGAATTATTTGTCGATGGTAATGTCCTGGACGAATCGATAA
CAATAAATATACTCGAAACGACCAGTGTTGGTAAGCTCAAGGAAATGATC
AGTGAACGATCAGGAGTCCCTCAATCTCTTATCATCCTAGGAACAAGACA
TCAACCATATATTGTCGATGGTGAAAATGATAGGATCTACGAATGTCACT
TTCAAGATAATATCGTAATAGTGAGTAAAAAGGTATTTGTATCGCTCATA
AAAGTTCACGAAGATGTCATTGTGAAAGAGAATTATTTTATACGAGATTT
TGAACACGATAACGTCAAAACACTTCTTGAGGACATGAAATATCGATATT
TTGATCAAGGGATTGTCTCTATGAAAAAGAACGAATGGAAATTGAGTACT
TTGTTAAAGAACGTTGGTGAATCTGAGTTTGTTTTGGTGTTGAAACCCAA
AACTGAATGCAATATTCTTTGAACGTATCAATTAATTTATA Coding sequence (CDS) from alignment at sc0000370:54885..58625+ >TCONS_00020766 ID=TCONS_00020766|Name=TCONS_00020766|organism=Clytia hemisphaerica|type=CDS|length=2454bp|location=Sequence derived from alignment at sc0000370:54885..58625+ (Clytia hemisphaerica)
ATGAGGAGTCACATTGTGGTGGATTTTGGTGACAATGTTACATCACTCTT
CTATTGGTTTGATGTGGACTCTCTCTCCACCTTGaaagaaaaagttcaaa
aacgtTATGAAATTCACATCACTGATCAAATTATTAAACATGGAAATACC
GTTCTAAGTGAAGAATCTTTCCGAAAGCTTTATAAGAATCGCTTCAAAGA
AGATGTAGATTTAAAAGTTGATATTCCAGACCCGTCACTAATTCAAAGTG
AGCGACGTAAGGTTTTCAAACGTGGTTGTGAAGGTATAATCCATATTTCT
TCTTATAAAGAACAAGACGGACTGTGTCCcaatctaactttcaagccgTC
TAATTTATCCTGGACCATAAAAGACTTGAAAAGTTACATTAGTACCAAAA
CCAACATGTCGGTGGAGCCAATGTGTCTTTTATTTAACAACATCATTCTA
TTGAGTGACGAAGAATTATGTGTTGATTATTTCCTTGATTTGAAAGGCTC
TTCACGTCCGATTTCTTTGAAGTTGAAGATGCTACCATCCGTTATTGCCA
GTGATGAAATGTTTCAGCACCGTTTATATTATGATTTGTGTTTGTCCCCG
ATACATGTAACGATACCAAGTTTCGGTGAAGTTGATGATTTCGTTCTATA
CCCGTTGGCTTCCATTGGTCAGATTGGTCGACCAGCCGTAATGAAATCTT
TAATTGAATCTCTATATCGAATCCCTTATGGAGAACAAGAATTGTTTTAT
GAAGGACAAGCATTAAGTGATAACCGCTACCCACAAAAAAATGTTGGTAA
TGTCCTTGAGCCAATTTATTACAAACTTGTTGTTTTTTCAAGACGAAGCA
AAGAGCTGGCATTGGTTTACGAACAAAATAACATTAGGCCTTTACATCCA
ATTCATATAGCAAGTTTCGAATGTGACCATATTTGGGAGTATAATTATCA
AGGGAAATCAGAGGAAAGTATTGTTCAGTTCATTGAGGATTCTATGAAAA
TCCCACAAagtaaacaatatttttttctggatGGTAGTGTAGTTAGTATT
AGTGAATTGATTGAGGAAAATACACGAGCTATTGAAACATTGAAAGTCAA
ACTAGCTGTTCAAGTCGATGACGACGAGCTAGAATTATTAAAAGTTGTAC
AAGAGCTGCAAATCAGTCGAGTTCGTTCAATTGTTCTGAAACATCCAAAC
AACGaaccATATCAAAGACATTCGtgaATGAGGAGTCACATTGTGGTGGA
TTTTGGTGACAATGTTACATCACTCTTCTATTGGTTTGATGTGGACTCTC
TCTCCACCTTGaaagaaaaagttcaaaaacgtTATGAAATTCACATCACT
GATCAAATTATTAAACATGGAAATACCGTTCTAAGTGAAGAATCTTTCCG
AAAGCTTTATAAGAATCGCTTCAAAGAAGATGTAGATTTAAAAGTTGATA
TTCCAGACCCGTCACTAATTCAAAGTGAGCGACGTAAGGTTTTCAAACGT
GGTTGTGAAGGTATAATCCATATTTCTTCTTATAAAGAACAAGACGGACT
GTGTCCcaatctaactttcaagccgTCTAATTTATCCTGGACCATAAAAG
ACTTGAAAAGTTACATTAGTACCAAAACCAACATGTCGGTGGAGCCAATG
TGTCTTTTATTTAACAACATCATTCTATTGAGTGACGAAGAATTATGTGT
TGATTATTTCCTTGATTTGAAAGGCTCTTCACGTCCGATTTCTTTGAAGT
TGAAGATGCTACCATCCGTTATTGCCAGTGATGAAATGTTTCAGCACCGT
TTATATTATGATTTGTGTTTGTCCCCGATACATGTAACGATACCAAGTTT
CGGTGAAGTTGATGATTTCGTTCTATACCCGTTGGCTTCCATTGGTCAGA
TTGGTCGACCAGCCGTAATGAAATCTTTAATTGAATCTCTATATCGAATC
CCTTATGGAGAACAAGAATTGTTTTATGAAGGACAAGCATTAAGTGATAA
CCGCTACCCACAAAAAAATGTTGGTAATGTCCTTGAGCCAATTTATTACA
AACTTGTTGTTTTTTCAAGACGAAGCAAAGAGCTGGCATTGGTTTACGAA
CAAAATAACATTAGGCCTTTACATCCAATTCATATAGCAAGTTTCGAATG
TGACCATATTTGGGAGTATAATTATCAAGGGAAATCAGAGGAAAGTATTG
TTCAGTTCATTGAGGATTCTATGAAAATCCCACAAagtaaacaatatttt
tttctggatGGTAGTGTAGTTAGTATTAGTGAATTGATTGAGGAAAATAC
ACGAGCTATTGAAACATTGAAAGTCAAACTAGCTGTTCAAGTCGATGACG
ACGAGCTAGAATTATTAAAAGTTGTACAAGAGCTGCAAATCAGTCGAGTT
CGTTCAATTGTTCTGAAACATCCAAACAACGaaccATATCAAAGACATTC
Gtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020766-exon-sc0000370-1491911889:54885..55194 | TCONS_00020766-exon-sc0000370-1491911889:54885..55194 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1510915933:54885..55194 | TCONS_00020766-exon-sc0000370-1510915933:54885..55194 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1575043694:54885..55194 | TCONS_00020766-exon-sc0000370-1575043694:54885..55194 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1491911889:56386..57608 | TCONS_00020766-exon-sc0000370-1491911889:56386..57608 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1510915933:56386..57608 | TCONS_00020766-exon-sc0000370-1510915933:56386..57608 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1575043694:56386..57608 | TCONS_00020766-exon-sc0000370-1575043694:56386..57608 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1491911889:57956..58625 | TCONS_00020766-exon-sc0000370-1491911889:57956..58625 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1510915933:57956..58625 | TCONS_00020766-exon-sc0000370-1510915933:57956..58625 | Clytia hemisphaerica | exon |
| TCONS_00020766-exon-sc0000370-1575043694:57956..58625 | TCONS_00020766-exon-sc0000370-1575043694:57956..58625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000370 | supercontig | sc0000370:54885..58625 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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