TCONS_00020765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020765
Unique NameTCONS_00020765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020765 ID=TCONS_00020765|Name=TCONS_00020765|organism=Clytia hemisphaerica|type=transcript|length=2550bp
TCAGTAAAGAAACACATCAGAAAAACATTAACAAACGAAATAGATTTGGT
GTGTGGTGATGCCACGTCAAATTTTGAGAATATTGGACGTTTATTGCAAA
TCATGTAATTTCTTACTGTTGAACTATCGGAAAGGTGGTAAAGGACATCT
CATTAAATGTCACCTTCACAAGGTCATTAAAGATTACACTCAAGTCAAAG
GAATTTGCCCAAACTGTGGCGTTCAGTGGGCCAGAGAGACCATCATAAAA
AATCGACCAGCGTTGAAAATTATTGGAGATCGCGTGTTCTGGAAGTAAAC
ATTTGTCTAGATAAGATTCTAAACTGGAAATGAGGAGTCACATTGTGGTG
GATTTTGGTGACAATGTTACATCACTCTTCTATTGGTTTGATGTGGACTC
TCTCTCCACCTTGaaagaaaaagttcaaaaacgtTATGAAATTCACATCA
CTGATCAAATTATTAAACATGGAAATACCGTTCTAAGTGAAGAATCTTTC
CGAAAGCTTTATAAGAATCGCTTCAAAGAAGATGTAGATTTAAAAGTTGA
TATTCCAGACCCGTCACTAATTCAAAGTGAGCGACGTAAGGTTTTCAAAC
GTGGTTGTGAAGGTATAATCCATATTTCTTCTTATAAAGAACAAGACGGA
CTGTGTCCcaatctaactttcaagccgTCTAATTTATCCTGGACCATAAA
AGACTTGAAAAGTTACATTAGTACCAAAACCAACATGTCGGTGGAGCCAA
TGTGTCTTTTATTTAACAACATCATTCTATTGAGTGACGAAGAATTATGT
GTTGATTATTTCCTTGATTTGAAAGGCTCTTCACGTCCGATTTCTTTGAA
GTTGAAGATGCTACCATCCGTTATTGCCAGTGATGAAATGTTTCAGCACC
GTTTATATTATGATTTGTGTTTGTCCCCGATACATGTAACGATACCAAGT
TTCGGTGAAGTTGATGATTTCGTTCTATACCCGTTGGCTTCCATTGGTCA
GATTGGTCGACCAGCCGTAATGAAATCTTTAATTGAATCTCTATATCGAA
TCCCTTATGGAGAACAAGAATTGTTTTATGAAGGACAAGCATTAAGTGAT
AACCGCTACCCACAAAAAAATGTTGGTAATGTCCTTGAGCCAATTTATTA
CAAACTTGTTGTTTTTTCAAGACGAAGCAAAGAGCTGGCATTGGTTTACG
AACAAAATAACATTAGGCCTTTACATCCAATTCATATAGCAAGTTTCGAA
TGTGACCATATTTGGGAGTATAATTATCAAGGGAAATCAGAGGAAAGTAT
TGTTCAGTTCATTGAGGATTCTATGAAAATCCCACAAagtaaacaatatt
tttttctggatGGTAGTGTAGTTAGTATTAGTGAATTGATTGAGGAAAAT
ACACGAGCTATTGAAACATTGAAAGTCAAACTAGCTGTTCAAGTCGATGA
CGACGAGCTAGAATTATTAAAAGTTGTACAAGAGCTGCAAATCAGTCGAG
TTCGTTCAATTGTTCTGAAACATCCAAACAACGGTACCATTATTtgtgaa
atttcattttctgagattcatcaaagaatgaaaatttcagaattGGAATA
TCTTATATTCAGAAAACATTGTGTTGGTTTATCGAAAAATACTTGCGTCC
TTCTCCATGACGATAAAGAGCTTACTTTCGCTGATGATCTTTACGGTTTG
TTGGTAACAGAAAATGGGAATTCCTTAGAATCGAACCTGGTTCTAACATT
ATTTGTTTATGTCGAGGATAAAACCCTTTTTGAAGAAGCAGATacctttt
gtttgaaatatgaCATGAAACTTTTGAAACGAGTAAATATCAGTTTTCTT
ACCGGTCAATTCTCatttgatattttacagaaccATATCAAAGACATTCG
tgatgtaaaatttcaaattgatagAGAGAAAGGAATTCCACCTCATTTGC
AGAGtttgttttatgaaaacaaGGAACTTAAAGATGAAGCAGAATTAATC
TACATGAACCCAAAGATGCTTTATGAGTCTTTAACATTCAATCTCGTCAT
AAAACCTGCAAATGAAGTTGAATTATTTGTCGATGGTAATGTCCTGGACG
AATCGATAACAATAAATATACTCGAAACGACCAGTGTTGGTAAGCTCAAG
GAAATGATCAGTGAACGATCAGGAGTCCCTCAATCTCTTATCATCCTAGG
AACAAGACATCAACCATATATTGTCGATGGTGAAAATGATAGGATCTACG
AATGTCACTTTCAAGATAATATCGTAATAGTGAGTAAAAAGGTATTTGTA
TCGCTCATAAAAGTTCACGAAGATGTCATTGTGAAAGAGAATTATTTTAT
ACGAGATTTTGAACACGATAACGTCAAAACACTTCTTGAGGACATGAAAT
ATCGATATTTTGATCAAGGGATTGTCTCTATGAAAAAGAACGAATGGAAA
TTGAGTACTTTGTTAAAGAACGTTGGTGAATCTGAGTTTGTTTTGGTGTT
GAAACCCAAAACTGAATGCAATATTCTTTGAACGTATCAATTAATTTATA
Run BLAST on NCBI

transcript from alignment at sc0000370:54885..58625+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020765 ID=TCONS_00020765|Name=TCONS_00020765|organism=Clytia hemisphaerica|type=transcript|length=3741bp|location=Sequence derived from alignment at sc0000370:54885..58625+ (Clytia hemisphaerica)
TCAGTAAAGAAACACATCAGAAAAACATTAACAAACGAAATAGATTTGGT
GTGTGGTGATGCCACGTCAAATTTTGAGAATATTGGACGTTTATTGCAAA
TCATGTAATTTCTTACTGTTGAACTATCGGAAAGGTGGTAAAGGACATCT
CATTAAATGTCACCTTCACAAGGTCATTAAAGATTACACTCAAGTCAAAG
GAATTTGCCCAAACTGTGGCGTTCAGTGGGCCAGAGAGACCATCATAAAA
AATCGACCAGCGTTGAAAATTATTGGAGATCGCGTGTTCTGGAAGTAAAC
ATTTGTCTAGGTAAGATTTCATATGCATACTCTTCTCTCttttttcttta
cctttttATTTCTTGATATGATTATAAGATGGGGTATTATTCCGAGGTGG
AACCTCCAATTAGGCGACACCATCAGGGAATAGGGTTGGTGTCCGCTATT
TAGAAGTGTCCGCCCTTTAGAAACAATTGAGCAATTGGATTGTTTAAGAA
ATAAAAGTTTGGATAGATCAATCCTGTCTATTTTTTTAAGTCTGCCCAGT
TTAACCGTCGATGTAATTAGAGAGGAAAAAGTAGGGTTTCGGTCAGTTTT
TGCAAAAAGCTTTGTCCGCTaccttaaagaaagaaattttggcgggaatt
taatttggcgtatcgttaaaaaagttttttcagagggaatttaatctGGC
GGTTAacatttttgtgcaaaaaacgctgttaaaaaaggaaaaaccctgaa
atagcacacatttgggagaataaatagagcaatttaaatttggcgggaat
taaatttggcggattttggccaaatccgccaaatccgccaaattttcttc
cctccaaaatttttttctttaaggtAATTGAAGGAttcgctaattgagtg
tccacCTTCAAGAAGCTTTTTTGTTACCTGAAACAATAATAAACCTGTAA
TTAGGACAAAACACCGCCTCGCTGCGCTCTATCAATGTGTCTAGTAAACA
GGGTGTGGGGTTGGAATCGTACCTCTATTTATCAAAAGTAACGTAAAATC
AGTTATTTAGTGGAAGATAATCCGGAAACAAATAGTTAACGtaacataca
cgcttttttataagaacgtttgtctgaatcgcagaccctTATAGATACAC
TTCCTATGTAGGTGGGATTTTCATAAAAAGGAAACCATAATTCGTacaaa
aaaggttttgaaaataaaaccacTTATTATATTTTGTTAGTTCACTGGCT
CTTGTCTTGAAACTCATGCTGCAAACTGGTTAAATATccaaaatctttct
tttgaaCACTTTTACCATAAGAAAaattgttaagaatattttatatGTCC
ttagatttggaaaaaaaaattctatgaatACGTTACCCGGCTAAACCAAA
AAAACActaatcttataaaaaagcatgtacTTAGATAGTGAAGCTCCCtt
cttattattattttcattgaagaaaaaatattcttcTATCTTTTGTTATA
GATAAGATTCTAAACTGGAAATGAGGAGTCACATTGTGGTGGATTTTGGT
GACAATGTTACATCACTCTTCTATTGGTTTGATGTGGACTCTCTCTCCAC
CTTGaaagaaaaagttcaaaaacgtTATGAAATTCACATCACTGATCAAA
TTATTAAACATGGAAATACCGTTCTAAGTGAAGAATCTTTCCGAAAGCTT
TATAAGAATCGCTTCAAAGAAGATGTAGATTTAAAAGTTGATATTCCAGA
CCCGTCACTAATTCAAAGTGAGCGACGTAAGGTTTTCAAACGTGGTTGTG
AAGGTATAATCCATATTTCTTCTTATAAAGAACAAGACGGACTGTGTCCc
aatctaactttcaagccgTCTAATTTATCCTGGACCATAAAAGACTTGAA
AAGTTACATTAGTACCAAAACCAACATGTCGGTGGAGCCAATGTGTCTTT
TATTTAACAACATCATTCTATTGAGTGACGAAGAATTATGTGTTGATTAT
TTCCTTGATTTGAAAGGCTCTTCACGTCCGATTTCTTTGAAGTTGAAGAT
GCTACCATCCGTTATTGCCAGTGATGAAATGTTTCAGCACCGTTTATATT
ATGATTTGTGTTTGTCCCCGATACATGTAACGATACCAAGTTTCGGTGAA
GTTGATGATTTCGTTCTATACCCGTTGGCTTCCATTGGTCAGATTGGTCG
ACCAGCCGTAATGAAATCTTTAATTGAATCTCTATATCGAATCCCTTATG
GAGAACAAGAATTGTTTTATGAAGGACAAGCATTAAGTGATAACCGCTAC
CCACAAAAAAATGTTGGTAATGTCCTTGAGCCAATTTATTACAAACTTGT
TGTTTTTTCAAGACGAAGCAAAGAGCTGGCATTGGTTTACGAACAAAATA
ACATTAGGCCTTTACATCCAATTCATATAGCAAGTTTCGAATGTGACCAT
ATTTGGGAGTATAATTATCAAGGGAAATCAGAGGAAAGTATTGTTCAGTT
CATTGAGGATTCTATGAAAATCCCACAAagtaaacaatatttttttctgg
atGGTAGTGTAGTTAGTATTAGTGAATTGATTGAGGAAAATACACGAGCT
ATTGAAACATTGAAAGTCAAACTAGCTGTTCAAGTCGATGACGACGAGCT
AGAATTATTAAAAGTTGTACAAGAGCTGCAAATCAGTCGAGTTCGTTCAA
TTGTTCTGAAACATCCAAACAACGGTACCATTATTtgtgaaatttcattt
tctgagattcatcaaagaatgaaaatttcagaattGGAATATCTTATATT
CAGAAAACATTGTGTTGGTTTATCGAAAAATACTTGCGTCCTTCTCCATG
ACGATAAAGAGCTTACTTTCGCTGATGATCTTTACGGTTTGTTGGTAACA
GAAAATGGGAATTCCTTAGAATCGAACCTGGTTCTAACATTATTTGTTTA
TGTCGAGGATAAAACCCTTTTTGAAGAAGCAGATaccttttgtttgaaat
atgaCATGAAACTTTTGAAACGAGTAAATATCAGTTTTCTTACCGGTCAA
TTCTCatttgatattttacagaaccATATCAAAGACATTCGtgatgtaaa
atttcaaattgatagAGAGAAAGGAATTCCACCTCATTTGCAGAGtttgt
tttatgaaaacaaGGAACTTAAAGATGAAGCAGAATTAATCTACATGAAC
CCAAAGATGCTTTATGAGTCTTTAACATTCAATCTCGTCATAAAACCTGC
AAATGAAGTTGAATTATTTGTCGATGGTAATGTCCTGGACGAATCGATAA
CAATAAATATACTCGAAACGACCAGTGTTGGTAAGCTCAAGGAAATGATC
AGTGAACGATCAGGAGTCCCTCAATCTCTTATCATCCTAGGAACAAGACA
TCAACCATATATTGTCGATGGTGAAAATGATAGGATCTACGAATGTCACT
TTCAAGATAATATCGTAATAGTGAGTAAAAAGGTATTTGTATCGCTCATA
AAAGTTCACGAAGATGTCATTGTGAAAGAGAATTATTTTATACGAGATTT
TGAACACGATAACGTCAAAACACTTCTTGAGGACATGAAATATCGATATT
TTGATCAAGGGATTGTCTCTATGAAAAAGAACGAATGGAAATTGAGTACT
TTGTTAAAGAACGTTGGTGAATCTGAGTTTGTTTTGGTGTTGAAACCCAA
AACTGAATGCAATATTCTTTGAACGTATCAATTAATTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011657XLOC_011657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020765-exon-sc0000370-1491911889:54885..55194TCONS_00020765-exon-sc0000370-1491911889:54885..55194Clytia hemisphaericaexon
TCONS_00020765-exon-sc0000370-1510915933:54885..55194TCONS_00020765-exon-sc0000370-1510915933:54885..55194Clytia hemisphaericaexon
TCONS_00020765-exon-sc0000370-1575043694:54885..55194TCONS_00020765-exon-sc0000370-1575043694:54885..55194Clytia hemisphaericaexon
TCONS_00020765-exon-sc0000370-1491911889:56386..58625TCONS_00020765-exon-sc0000370-1491911889:56386..58625Clytia hemisphaericaexon
TCONS_00020765-exon-sc0000370-1510915933:56386..58625TCONS_00020765-exon-sc0000370-1510915933:56386..58625Clytia hemisphaericaexon
TCONS_00020765-exon-sc0000370-1575043694:56386..58625TCONS_00020765-exon-sc0000370-1575043694:56386..58625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:54885..58625 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24931	1.6514	1.62068	1.42691	9.64641	3.92231	7.23968	7.97121	2.92933	3.84368	4.22326	1.83849	2.14684	1.55355	2.43835	2.00705	3.45351	3.46141	1.52159	1.81969	4.42511	3.85941	3.63406	3.68476	3.20531	4.53076	2.1029	2.2621	2.23615	2.34787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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