TCONS_00020761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020761
Unique NameTCONS_00020761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020761 ID=TCONS_00020761|Name=TCONS_00020761|organism=Clytia hemisphaerica|type=transcript|length=2512bp
TTCCATTAGGGGTTTTACATGGGCTGTCCTTTTCATTGTCATTAATTATT
ACAgtgTCGAATATTTAATGCAGCAGGATGACATCCGAAGAAATTAAAGA
AGTGAAAAACATCGGTTCTTGGTTCCGTCTCAAAAATCTAATTGGTCTAA
AAAATAATGGTAGATCTTTCTTATATGATTTACTAAAAAGTCAAGAAGAC
ACAGTTTTTAAGTTGTATATGGGTGAAGAAACAACATATGCTTCCGATTA
TGTGTCAGCTAAGTATTTATACGAAGAAGAGTACGTCTTTAGAGAGCCGT
TcattggaaaatattttaacacaaATATGCTTGGAGGACGTAAACCATCT
ATGTTTTGCAACGGTGAggatcacgccacgaaaaaagCTGACACAATGAA
AGTGTTAGAGTACCGTAtggaaaaaataagtttgaaagATTTGAATGATG
TCATCGAATCGGAAATGAAAGCGATTGATGTTACCAAGGGAAAAGGAAAC
AATTTCGAGGCTTGTCTTGAAAATGTTGCGAAATGCGTGGCAGATTCGCT
TATTCTTGGTAAAAGTCTCCACAATCGTGATGACTGGAAAGATTGGTTTG
ATAGCTCTTTGAAGATGTTTAATTTCCATCCATGGAACTTTGGAGAAGCA
GCAGACAGAGACAGATGTTTGAATGCAATGAAACAGACACCAACTGTTCA
AAACCTTGATAAAATCCTTCCCGAAACCACTCAAACAATGGAAGGGGAAA
CTTTTGAATTAATGCACAATGTTCATTTCAACTGTACACCTGTACTATCA
TGGTTAATGATCTCCTGTATTGCTCGCTTCACCGATTCATTAACTGAGGA
TGAACGACAAAGTTTGAGGGACGAAGCATCTCTTTTGTTTCGAGAAGAAA
CAGACTCGACTTTTGAAGAACGACTGAGCAAGTCGGAGAAGATTGATACT
TTTATTTTGGAGATTATACGTTTGAACACACCTCATCTAGCTGgtactta
TGGAAGAGCCAGGAAAGATTTTGTAATGGAATCCAAAACAGGGCGATATC
AAATCCATAAAGATGATTTACTGTGTACTTTCGTCTACGCCATTCATCGA
GATGAAGAAGTTTTTGAGGAtcctttcaaattgaaaatgacCCGTGATAG
GAAGATTATCGAGAATCAAAATGTGTGTTTTGGGTCTCCTCTTGTCATGG
AACCTACAGCCAACAATCATAAATGTCCAGCTGCTAGAGTTATGATCAAT
GTATTGAAAATGTTTCTGGCACATTTCACTAGATGTGATGTAAACATTAC
GTCAGATGTCACGTGCTCTTACACAAGCTNTCAACAATCATAAATGTCCA
GCTGATAGAATTATGATCAAtgtattgaaaatgtttttggcacaTTTCAC
TAGATGTGATGTAAACATTACGTCAGATGTCACGTGCTCTTACACAAGCT
CAGAAAGATTGGCATGCACCGATGAGCCTCTTGTTGTTGAAAAGTTCGTG
TACAAAGAATAGACGTACAAGTTTTCTTATAGAAACATTCATAATCAATG
AAGCTTTCAGATGttctgagttttaagcctaaaaagttcttaaattttct
tatttttactaCCTTTAgagttttcatttctttaatcctattttatagaa
aatttattttcaatgtatcctagtaatatcttagaaattttttcttataa
cagTAGCGTGTGGTCACCTCCGTTGTTTAGctttatgtctatgagtgtTG
TCGCTCGTCTCGCTTATTATGACATATCAAATTCTAGCTTGTGTCTAGCT
TATCGTGCGATACGCTCGATCGCTTCAACACTGGAGAGAGAGCGATTTCT
CACATAGGAGCTCCCATAAGTCTACAATTAAAGTGGCACCATCATACGCC
GTCCAAAATGGCCTTTGATGGTAATAACTAAAAACTTACTAATCACATCC
AGGATCTTTAATTAGGCCGAATAACAGATTGTAATCTCAGAACATTCCCT
AAAGATTTCAGAAACTCGCTTCATTGATTTTTCATAAGTCTCAGAAAAGT
TTTAAATAATCTGCTTGAGCCTAACACGGGGATATGTGCTCTCCATCTTA
GATTCTTTAGATGTCGATGTGACTGAAACATGTGCAATCAAACTCTCACA
GTTCGTCCAAAGCTTAAAATAAGCTATGGTGCTCACGGTAgcaaatcctt
aaaatgttcttgacttcccagctggcacacaacgttgtttcaacgtccgt
CTAATGTTctcaacgtccatataacgttagatggacgttgaaacaacgtt
gtgtgccagctgggttgtttttaatattttggccggCCAAAGAAGCTACG
CTCTTATACAgttcattttcctttgtttttttatagatttcctttgttta
gtttttttttatttattaacaTCTCTTTGATCACCATAAAACTACaatat
ataattttaattttcttttttgggaaaaaaatacaTACATATCTACATTG
CTTTTTAAAATA
Run BLAST on NCBI

transcript from alignment at sc0000370:27527..33925+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020761 ID=TCONS_00020761|Name=TCONS_00020761|organism=Clytia hemisphaerica|type=transcript|length=6399bp|location=Sequence derived from alignment at sc0000370:27527..33925+ (Clytia hemisphaerica)
TTCCATTAGGGGTTTTACATGGGCTGTCCTTTTCATTGTCATTAATTATT
ACAGTAAGtgaagtatgtaatttttccttAAGCTTTttattatacagggt
gtccctaattaaagtatcgagtttgaacatgcaattgagtagaaaagttt
gtgtgtgttatcgctaaaatataagaacgttcaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaagagggagagcttaaaataca
attttgtgaacacacacataaaactttctactcatagttgtgtttcgact
cgatactttaattagggacaccctgtataagtaGAGTACTCTATGAGTGA
AATCACTCTGTGTGTCTGATTTATATACAAAAATATATCCAAAAAATTTA
AGGTAGgtttttatttgataagattGATTAAAAATGGCAAAGTTATGACA
TAAGGTTTGTCATACATACAACACTTCAATGGATTTTCACCAGTTTCAAG
CGCCAAACAGTAGCGTACAAAGATAGACGCAAACAAAATttctgtacagg
gtgtcccgaaaaaaagtatcgagtcgtaccacttctatataAAGAAAgat
cttgtgtgtgtttcaccatgaacatataaacgactggacatctatctttt
attgtctctttgaagcgagcttcgttgccgcctgtatttcaaaattggta
tgaaaaatccgacaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aattggtatgaaaaatccgacaatattctgtcataattttatttctttga
attatttaggtaaaaagattgatagagcttgaacattactcctaatgtac
aaaTAATTTGTTTCCgatttttttcacaagtttgcaatatattttatcaa
tattttcaactctgaaatgcagaatttcaactacGTGTATACTTTAGAAa
cacttttgtcactccaataatcttttttatgactttaaaaaaatagcttg
ccaaagttgagagcctgtgtcataagaatatcgaaattagaatgtgacac
tctttaaaattattagacacttttaagtcagaatttagaaatattagtcg
gagttttgacaagctgacgatgattttgcctctgttatctttgttatgat
atagataaaagacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcc
agtcgtttatatgttcatggtttcGCTAAAGTTTCTCTTTGTGTCATGTT
AATTGTCacgagacatcttttatgaataactttaataaaaaacaattttc
aataactttaacgtcgtAAAAATTGTAacgaaagttaattctttttaatc
ataatgactgttgtaaaagcaattattttgttggtatatattttcttaca
ttttgttaaacacacgcaacaaccttctattcagaatcatgttcgaactc
gatacttttttttcaggacaccctgtagaagagtagatttttatgacact
tatgacaattatctattcataatataaaaagatgattgcattgtcataaa
aatctacttTCCAACACAAATACTGCGCCCCTTTTGTCCACGCTAATGTC
ACAGATGTAAGAAAAactgaatttatttttatttttaggtgTCGAATATT
TAATGCAGCAGGATGACATCCGAAGAAATTAAAGAAGTGAAAAACATCGG
TTCTTGGTTCCGTCTCAAAAATCTAATTGGTCTAAAAAATAATGGTAGAT
CTTTCTTATATGATTTACTAAAAAGTCAAGAAGACACAGTTTTTAAGTTG
TATATGGGTGAAGAAACAACATATGCTTCCGATTATGTGTCAGCTAAGTA
TTTATACGAAGAAGAGTACGTCTTTAGAGAGCCGTTcattggaaaatatt
ttaacacaaATATGCTTGGAGGACGTAAACCATCTATGTTTTGCAACGGT
GAggatcacgccacgaaaaaagCTGACACAATGAAAGTGTTAGAGTACCG
TAtggaaaaaataagtttgaaagATTTGAATGATGTCATCGAATCGGAAA
TGAAAGCGATTGATGTTACCAAGGGAAAAGGAAACAATTTCGAGGCTTGT
CTTGAAAATGTAAGAATTTTAAAAGTAAAcctttttgatgatatcacttg
ATAGGGTTGTAGGATGGAACTTAAGCTTATTAAGCTTGCCAGAgacaacc
ccttctcacaggaTTGGCCTAAATGTTGTTCCCAGTTGAAAATTATACTC
GAATTTTGTCCAAGCTTACACTGGAAAAAAATTGTGCTATTTCTTTCATC
GCCACCGAATTTTATGACAGAACTTTCCTGGTATTTATGTTACCAGTCTG
CTTAAAACCTGATCACGCTAAAGATTGAAAGGTGTCTATTAGCCGTATGT
TTGAGTGAGTAAGATAAGACCCCAGtttcactggaaaatttggtaaaatc
ttGTCCCTGgttggagaaaaaaaacacaatttcagccccatcggtaaatc
gattttatttttatccccattgaaattaAATTGCACTCTAAAGATTATCA
TTCCCACTGGTTTTTTCGACAGGAATAAATCTAATAGGAAATATGATATA
TTTCAGGTTGCGAAATGCGTGGCAGATTCGCTTATTCTTGGTAAAAGTCT
CCACAATCGTGATGACTGGAAAGATTGGTTTGATAGCTCTTTGAAGATGT
TTAATTTCCATCCATGGAACTTTGGAGAAGCAGCAGACAGAGACAGATGT
TTGAATGCAATGAAACAGGTATTGATTTAGCCTTTAAATCTTTAACCTTG
CCAACTGCGCAGTGTAATATGTTCTCAAAATCTTTAAAGTCATGAAAATA
AATCATCAATAATTGTCCCTGTCAAATATAAACTTGTATATAAATATATT
TGAGATATTTGCCAAGTATTAAGAATCTAGACATTTCCAGTTACCTGATT
TTGCCTGTGTGACGCCGGTGTCTTTCGATGTTTCGAGAAGCTTACTAAAA
GAAGATCCAACTAAGGaaatatgtttttttctatTGTATAAGGAAGTTGA
AGTGTATTATTTCTTAATTTTACTAAATTTTCATTGATTCCTCTCTCATC
TTTCAGACACCAACTGTTCAAAACCTTGATAAAATCCTTCCCGAAACCAC
TCAAACAATGGAAGGGGAAACTTTTGAATTAATGCACAATGTTCATTTCA
ACTGTACACCTGTACTATCATGGTTAATGATCTCCTGTATTGCTCGCTTC
ACCGATTCATTAACTGAGGATGAACGACAAAGTTTGAGGGACGAAGCATC
TCTTTTGTTTCGAGAAGAAACAGACTCGACTTTTGAAGAACGACTGAGCA
AGTCGGAGAAGATTGATACTTTTATTTTGGAGATTATACGTTTGAACACA
CCTCATCTAGCTGGTAAGGTCATGGCAAGGTTTTATTCTTCGTGCAAAAA
CTTCTGACTGTAAATGAACTGTTTTTAAAACACTGAAATAACTTTGTAAG
AAATGATATTTTGcctgcttttttataagaagcagTAAATTTCAGCTGAG
GCGcgacttttctttttcgaattttctttatttttctttatttgagATTT
TCACgattaaaaatgtttaattatcaagagggtttgtaaaacattggtga
atgacaatttaaaaaaatgaaaaatattgtattcaataataaagttataa
gaaatttcttttgtagGATTATAAATagcactttttcatttgaaatactg
CGCTACATcacggggtgcctcactttctaactgatattttcagatagcga
gtcggtatgtctgattatggaaacaatttaaagtcaattgaaacaataat
tgtcaaaatatttactcCGATATTTTTAAAGAGGAATCATGAAagttctc
aaattcataacatacgctgataaaattagatttacttcacttttcttata
aaaacaaaacactcAAGGgtacagagatggatttctattgtgaacagttt
acaatagaaaagacaaagaatatatccgctaaggaattctcctCCTTCGC
TATTACATATCCCTGAAATCAGCAACTACCCAACCGTTTCTACAACATTC
AGAAGCtgaaattattttataattttgccaaattaagcctcatattcttt
ttaaaaaatcatttaacatGACGATACTACGACTTCTCTTGATTACACTA
ATTGACCGAATCTATCGTAttttttttcaggtacttaTGGAAGAGCCAGG
AAAGATTTTGTAATGGAATCCAAAACAGGGCGATATCAAATCCATAAAGA
TGATTTACTGTGTACTTTCGTCTACGCCATTCATCGAGATGAAGAAGTTT
TTGAGGAtcctttcaaattgaaaatgacCCGTGATAGGAAGATTATCGAG
AATCAAAATGTGTGTTTTGGGTCTCCTCTTGTCATGGAACCTACAGCCAA
CAATCATAAATGTCCAGCTGCTAGAGTTATGATCAATGTATTGAAAATGT
TTCTGGCACATTTCACTAGATGTGATGTAAACATTACGTCAGATGTCACG
TGCTCTTACACAAGCTNTCAACAATCATAAATGTCCAGCTGATAGAATTA
TGATCAAtgtattgaaaatgtttttggcacaTTTCACTAGATGTGATGTA
AACATTACGTCAGATGTCACGTGCTCTTACACAAGCTCAGAAAGATTGGC
ATGCACCGATGAGCCTCTTGTTGTTGAAAAGTTCGTGTACAAAGAATAGA
CGTACAAGTTTTCTTATAGAAACATTCATAATCAATGAAGCTTTCAGATG
ttctgagttttaagcctaaaaagttcttaaattttcttatttttactaCC
TTTAgagttttcatttctttaatcctattttatagaaaatttattttcaa
tgtatcctagtaatatcttagaaattttttcttataacagTAGCGTGTGG
TCACCTCCGTTGTTTAGctttatgtctatgagtgtTGTCGCTCGTCTCGC
TTATTATGACATATCAAATTCTAGCTTGTGTCTAGCTTATCGTGCGATAC
GCTCGATCGCTTCAACACTGGAGAGAGAGCGATTTCTCACATAGGAGCTC
CCATAAGTCTACAATTAAAGTGGCACCATCATACGCCGTCCAAAATGGCC
TTTGATGGTAATAACTAAAAACTTACTAATCACATCCAGGATCTTTAATT
AGGCCGAATAACAGATTGTAATCTCAGAACATTCCCTAAAGATTTCAGAA
ACTCGCTTCATTGATTTTTCATAAGTCTCAGAAAAGTTTTAAATAATCTG
CTTGAGCCTAACACGGGGATATGTGCTCTCCATCTTAGATTCTTTAGATG
TCGATGTGACTGAAACATGTGCAATCAAACTCTCACAGTTCGTCCAAAGC
TTAAAATAAGCTATGGTGCTCACGGTAgcaaatccttaaaatgttcttga
cttcccagctggcacacaacgttgtttcaacgtccgtCTAATGTTctcaa
cgtccatataacgttagatggacgttgaaacaacgttgtgtgccagctgg
gttgtttttaatattttggccggCCAAAGAAGCTACGCTCTTATACAgtt
cattttcctttgtttttttatagatttcctttgtttagtttttttttatt
tattaacaTCTCTTTGATCACCATAAAACTACaatatataattttaattt
tcttttttgggaaaaaaatacaTACATATCTACATTGCTTTTTAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011654XLOC_011654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020761-exon-sc0000370-1491911889:27527..27579TCONS_00020761-exon-sc0000370-1491911889:27527..27579Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1510915933:27527..27579TCONS_00020761-exon-sc0000370-1510915933:27527..27579Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1575043694:27527..27579TCONS_00020761-exon-sc0000370-1575043694:27527..27579Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1491911889:29815..30285TCONS_00020761-exon-sc0000370-1491911889:29815..30285Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1510915933:29815..30285TCONS_00020761-exon-sc0000370-1510915933:29815..30285Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1575043694:29815..30285TCONS_00020761-exon-sc0000370-1575043694:29815..30285Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1491911889:30783..30944TCONS_00020761-exon-sc0000370-1491911889:30783..30944Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1510915933:30783..30944TCONS_00020761-exon-sc0000370-1510915933:30783..30944Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1575043694:30783..30944TCONS_00020761-exon-sc0000370-1575043694:30783..30944Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1491911889:31283..31589TCONS_00020761-exon-sc0000370-1491911889:31283..31589Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1510915933:31283..31589TCONS_00020761-exon-sc0000370-1510915933:31283..31589Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1575043694:31283..31589TCONS_00020761-exon-sc0000370-1575043694:31283..31589Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1491911889:32407..33925TCONS_00020761-exon-sc0000370-1491911889:32407..33925Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1510915933:32407..33925TCONS_00020761-exon-sc0000370-1510915933:32407..33925Clytia hemisphaericaexon
TCONS_00020761-exon-sc0000370-1575043694:32407..33925TCONS_00020761-exon-sc0000370-1575043694:32407..33925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:27527..33925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.7857	23.9943	15.4672	9.34525	160.923	123.652	139.263	106.751	25.0981	35.8612	20.0244	16.5281	2.90535	0.202207	6.79476	7.69106	15.474	17.8889	5.39887	9.91609	1.30114e-05	0.449598	6.23392	10.8396	0	0	0.00351729	0.000186943	6.89261	0.00758741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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