TCONS_00020740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020740
Unique NameTCONS_00020740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020740 ID=TCONS_00020740|Name=TCONS_00020740|organism=Clytia hemisphaerica|type=transcript|length=711bp
TCAGAGTTGAGATCGATATGCAAACCAGACCTTCCTGTATTGGCCGTTAG
TGCCACTGTCAATGCTGACCTAACAGAACTCATCATGAATAGCGTGGAAC
TTTCGAAACATCTGAAAATTGTTTCTGCTTGCAGTGATCGTCCAAACATT
AAATTAAACATTATAAAGATTAAAGACAAAGAGGATTATGCTTGTTTAAG
ATGGCTAGTTGGACTTGAAAGCAATTTCAAGGTTTTAATATATACCAGAT
CAATGGAATTGTGTGGTCAGCTTTACAGTGTCCTGTTATCATTTTTCGCT
GAAAAATATGCTAACCCAGGAGAAATAGTGGCCATGTTTCATGCCGAAAC
TCCTCAATCTTGTAAAGATGAGATTTTAAAATCTCTCAGATTTGACAATG
CGATAATCAGGATAGTGATTTGTACAAGTGCACTGGAATGTGGAGTTAAT
GTAAAAAATGTCCGTTATGTCATCCACTATGGGCCGTCCTACGATGTTCT
CGATTATTGTCAACAGATTGGTAGAGCTGGACGAAATACTATCAACCAAT
GTCATGCCGTGCTGTATACTTTTCCCAATGCTAAGCGAAACATTTCAGCT
AATCTCAAGAGCTACATGGCCGGTACAAGATGTTTGAGAACAGAATTGTA
TACTCAATTCAATGAGAATAACTGTACCATTCCATCACTTGAATTAAAGC
ACAACTGTTGT
Run BLAST on NCBI

protein sequence of TCONS_00020740-protein

>TCONS_00020740-protein ID=TCONS_00020740-protein|Name=TCONS_00020740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
SELRSICKPDLPVLAVSATVNADLTELIMNSVELSKHLKIVSACSDRPNI
KLNIIKIKDKEDYACLRWLVGLESNFKVLIYTRSMELCGQLYSVLLSFFA
EKYANPGEIVAMFHAETPQSCKDEILKSLRFDNAIIRIVICTSALECGVN
VKNVRYVIHYGPSYDVLDYCQQIGRAGRNTINQCHAVLYTFPNAKRNISA
NLKSYMAGTRCLRTELYTQFNENNCTIPSLELKHNCC
Run BLAST on NCBI

transcript from alignment at sc0000365:46002..46712

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020740 ID=TCONS_00020740|Name=TCONS_00020740|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0000365:46002..46712 (Clytia hemisphaerica)
ACAACAGTTGTGCTTTAATTCAAGTGATGGAATGGTACAGTTATTCTCAT
TGAATTGAGTATACAATTCTGTTCTCAAACATCTTGTACCGGCCATGTAG
CTCTTGAGATTAGCTGAAATGTTTCGCTTAGCATTGGGAAAAGTATACAG
CACGGCATGACATTGGTTGATAGTATTTCGTCCAGCTCTACCAATCTGTT
GACAATAATCGAGAACATCGTAGGACGGCCCATAGTGGATGACATAACGG
ACATTTTTTACATTAACTCCACATTCCAGTGCACTTGTACAAATCACTAT
CCTGATTATCGCATTGTCAAATCTGAGAGATTTTAAAATCTCATCTTTAC
AAGATTGAGGAGTTTCGGCATGAAACATGGCCACTATTTCTCCTGGGTTA
GCATATTTTTCAGCGAAAAATGATAACAGGACACTGTAAAGCTGACCACA
CAATTCCATTGATCTGGTATATATTAAAACCTTGAAATTGCTTTCAAGTC
CAACTAGCCATCTTAAACAAGCATAATCCTCTTTGTCTTTAATCTTTATA
ATGTTTAATTTAATGTTTGGACGATCACTGCAAGCAGAAACAATTTTCAG
ATGTTTCGAAAGTTCCACGCTATTCATGATGAGTTCTGTTAGGTCAGCAT
TGACAGTGGCACTAACGGCCAATACAGGAAGGTCTGGTTTGCATATCGAT
CTCAACTCTGA

Coding sequence (CDS) from alignment at sc0000365:46002..46712

>TCONS_00020740 ID=TCONS_00020740|Name=TCONS_00020740|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000365:46002..46712 (Clytia hemisphaerica)
ACAACAGTTGTGCTTTAATTCAAGTGATGGAATGGTACAGTTATTCTCAT
TGAATTGAGTATACAATTCTGTTCTCAAACATCTTGTACCGGCCATGTAG
CTCTTGAGATTAGCTGAAATGTTTCGCTTAGCATTGGGAAAAGTATACAG
CACGGCATGACATTGGTTGATAGTATTTCGTCCAGCTCTACCAATCTGTT
GACAATAATCGAGAACATCGTAGGACGGCCCATAGTGGATGACATAACGG
ACATTTTTTACATTAACTCCACATTCCAGTGCACTTGTACAAATCACTAT
CCTGATTATCGCATTGTCAAATCTGAGAGATTTTAAAATCTCATCTTTAC
AAGATTGAGGAGTTTCGGCATGAAACATGGCCACTATTTCTCCTGGGTTA
GCATATTTTTCAGCGAAAAATGATAACAGGACACTGTAAAGCTGACCACA
CAATTCCATTGATCTGGTATATATTAAAACCTTGAAATTGCTTTCAAGTC
CAACTAGCCATCTTAAACAAGCATAATCCTCTTTGTCTTTAATCTTTATA
ATGTTTAATTTAATGTTTGGACGATCACTGCAAGCAGAAACAATTTTCAG
ATGTTTCGAAAGTTCCACGCTATTCATGATGAGTTCTGTTAGGTCAGCAT
TGACAGTGGCACTAACGGCCAATACAGGAAGGTCTGGTTTGCATATCGAT
CTCAACTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011637XLOC_011637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020740-exon-sc0000365-1491911889:46002..46712TCONS_00020740-exon-sc0000365-1491911889:46002..46712Clytia hemisphaericaexon
TCONS_00020740-exon-sc0000365-1510915933:46002..46712TCONS_00020740-exon-sc0000365-1510915933:46002..46712Clytia hemisphaericaexon
TCONS_00020740-exon-sc0000365-1575043694:46002..46712TCONS_00020740-exon-sc0000365-1575043694:46002..46712Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020740-proteinTCONS_00020740-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:46002..46712 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0689171	0	0	0.76245	1.43093	0.90861	0.680504	0.77421	0.295072	0.787611	0.894286	0.235011	0.244062	0.0802607	0.086132	0	0	0	0	0	0	0	0	0.379391	0.270878	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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