TCONS_00020738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020738
Unique NameTCONS_00020738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020738 ID=TCONS_00020738|Name=TCONS_00020738|organism=Clytia hemisphaerica|type=transcript|length=628bp
GACCAAAGCAGAAACAATAGGCCTCCAACGAAAGGCCCCAGTCAAGAAAA
GTGTACCCAGTGCTATCGCTGGGGACACATTGCTAAAGAGTGTAGAAATC
GAAAAAAAGGTGGTTGACTAGGCCATGCCCAGAAGATTGAGGAAGAGACC
ATTTTTCTAAAAGTCGACAAAGTCGCTTGCAATGAAAAATCACGGAAACT
ACGGTCAGTCTTCTGGGTAAAGCTATATCAGAAACCAATACAAACTCTGG
TAGACACTGGTGCGACAGTCACAGCGATTTcggctggaacactagaacaa
aTCAGTAGAAACACAACATTGTACAAGGCAGACGTCCCGCCTGCCCGTGT
TGAAGTAGCTAATGGTAATATGGAAGAGGCAATAGAAGTCTTGAACCTTC
CCATTACTATTGGTGGCTCAACATTCTTTCATCCGACACACGTATTCAAG
AATCTTCCATTTCCACTCTTATTGGGTGATGACTTCCTCGAGGTTAATCA
AGACCGGCTAAGCTTCAACGGATCAGCTGCAGAGTTGACGTTAAAAGACA
GCCTCTCTAATAATCTCACGTACATCAATTCCGTGAGTACCTCAGTGGAT
GATATCACGAAGAATGATCGAAGCCTAG
Run BLAST on NCBI

transcript from alignment at sc0000365:27716..28343

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020738 ID=TCONS_00020738|Name=TCONS_00020738|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at sc0000365:27716..28343 (Clytia hemisphaerica)
CTAGGCTTCGATCATTCTTCGTGATATCATCCACTGAGGTACTCACGGAA
TTGATGTACGTGAGATTATTAGAGAGGCTGTCTTTTAACGTCAACTCTGC
AGCTGATCCGTTGAAGCTTAGCCGGTCTTGATTAACCTCGAGGAAGTCAT
CACCCAATAAGAGTGGAAATGGAAGATTCTTGAATACGTGTGTCGGATGA
AAGAATGTTGAGCCACCAATAGTAATGGGAAGGTTCAAGACTTCTATTGC
CTCTTCCATATTACCATTAGCTACTTCAACACGGGCAGGCGGGACGTCTG
CCTTGTACAATGTTGTGTTTCTACTGAtttgttctagtgttccagccgAA
ATCGCTGTGACTGTCGCACCAGTGTCTACCAGAGTTTGTATTGGTTTCTG
ATATAGCTTTACCCAGAAGACTGACCGTAGTTTCCGTGATTTTTCATTGC
AAGCGACTTTGTCGACTTTTAGAAAAATGGTCTCTTCCTCAATCTTCTGG
GCATGGCCTAGTCAACCACCTTTTTTTCGATTTCTACACTCTTTAGCAAT
GTGTCCCCAGCGATAGCACTGGGTACACTTTTCTTGACTGGGGCCTTTCG
TTGGAGGCCTATTGTTTCTGCTTTGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011635XLOC_011635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020738-exon-sc0000365-1491911889:27716..28343TCONS_00020738-exon-sc0000365-1491911889:27716..28343Clytia hemisphaericaexon
TCONS_00020738-exon-sc0000365-1510915933:27716..28343TCONS_00020738-exon-sc0000365-1510915933:27716..28343Clytia hemisphaericaexon
TCONS_00020738-exon-sc0000365-1575043694:27716..28343TCONS_00020738-exon-sc0000365-1575043694:27716..28343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:27716..28343 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.114185	0.180462	0	0	0.0713518	0.265142	0.343138	0	0.225252	0.116963	0.679785	0.51597	0.127127	0.130301	0	0.37675	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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