TCONS_00020737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020737
Unique NameTCONS_00020737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020737 ID=TCONS_00020737|Name=TCONS_00020737|organism=Clytia hemisphaerica|type=transcript|length=466bp
TGCAACCAACACAAAGGGAGAACTAGAAAAGCTCCAATCTATCCCATTCC
AATCACGTCACCTTTCTCTGAAATTGTATGTGATGTCCTTGGCCCTCTGA
CCCCGATAAATGATGGGAACAGATATGTCATATCATTCATGGATAGATAT
ACATCATGGCCTGAAGCATTTGCGGTTAAAACGATTGAGACTAAAGTAGT
TGCGAAGCTATTGGTAGAAGAAATCATTTTCCGTTTCGGCACACCTAAAA
CGTTTTCTACAGATCAGGGAACGAATTTCACTTCAAAATCAATGAAAGCA
GTTTGTCAGAGACTTGGCATCAAGAAAATAGAGTCTACTACTTATCACCC
TCAGTCGAATGGATTTATTGAAAGAATGAATCAGGTTATCATCACAGGGA
TCGCTCATCATGTCAATTCAAATCACACCAACTGGGATACGTTACTTCCT
GGAGTTCTATTTGCGC
Run BLAST on NCBI

protein sequence of TCONS_00020737-protein

>TCONS_00020737-protein ID=TCONS_00020737-protein|Name=TCONS_00020737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
CNQHKGRTRKAPIYPIPITSPFSEIVCDVLGPLTPINDGNRYVISFMDRY
TSWPEAFAVKTIETKVVAKLLVEEIIFRFGTPKTFSTDQGTNFTSKSMKA
VCQRLGIKKIESTTYHPQSNGFIERMNQVIITGIAHHVNSNHTNWDTLLP
GVLFA
Run BLAST on NCBI

transcript from alignment at sc0000365:24894..25359

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020737 ID=TCONS_00020737|Name=TCONS_00020737|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at sc0000365:24894..25359 (Clytia hemisphaerica)
GCGCAAATAGAACTCCAGGAAGTAACGTATCCCAGTTGGTGTGATTTGAA
TTGACATGATGAGCGATCCCTGTGATGATAACCTGATTCATTCTTTCAAT
AAATCCATTCGACTGAGGGTGATAAGTAGTAGACTCTATTTTCTTGATGC
CAAGTCTCTGACAAACTGCTTTCATTGATTTTGAAGTGAAATTCGTTCCC
TGATCTGTAGAAAACGTTTTAGGTGTGCCGAAACGGAAAATGATTTCTTC
TACCAATAGCTTCGCAACTACTTTAGTCTCAATCGTTTTAACCGCAAATG
CTTCAGGCCATGATGTATATCTATCCATGAATGATATGACATATCTGTTC
CCATCATTTATCGGGGTCAGAGGGCCAAGGACATCACATACAATTTCAGA
GAAAGGTGACGTGATTGGAATGGGATAGATTGGAGCTTTTCTAGTTCTCC
CTTTGTGTTGGTTGCA

Coding sequence (CDS) from alignment at sc0000365:24894..25359

>TCONS_00020737 ID=TCONS_00020737|Name=TCONS_00020737|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000365:24894..25359 (Clytia hemisphaerica)
CGCAAATAGAACTCCAGGAAGTAACGTATCCCAGTTGGTGTGATTTGAAT
TGACATGATGAGCGATCCCTGTGATGATAACCTGATTCATTCTTTCAATA
AATCCATTCGACTGAGGGTGATAAGTAGTAGACTCTATTTTCTTGATGCC
AAGTCTCTGACAAACTGCTTTCATTGATTTTGAAGTGAAATTCGTTCCCT
GATCTGTAGAAAACGTTTTAGGTGTGCCGAAACGGAAAATGATTTCTTCT
ACCAATAGCTTCGCAACTACTTTAGTCTCAATCGTTTTAACCGCAAATGC
TTCAGGCCATGATGTATATCTATCCATGAATGATATGACATATCTGTTCC
CATCATTTATCGGGGTCAGAGGGCCAAGGACATCACATACAATTTCAGAG
AAAGGTGACGTGATTGGAATGGGATAGATTGGAGCTTTTCTAGTTCTCCC
TTTGTGTTGGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011634XLOC_011634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020737-exon-sc0000365-1491911889:24894..25359TCONS_00020737-exon-sc0000365-1491911889:24894..25359Clytia hemisphaericaexon
TCONS_00020737-exon-sc0000365-1510915933:24894..25359TCONS_00020737-exon-sc0000365-1510915933:24894..25359Clytia hemisphaericaexon
TCONS_00020737-exon-sc0000365-1575043694:24894..25359TCONS_00020737-exon-sc0000365-1575043694:24894..25359Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020737-proteinTCONS_00020737-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:24894..25359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.294216	0	0.166154	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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