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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020729 ID=TCONS_00020729|Name=TCONS_00020729|organism=Clytia hemisphaerica|type=transcript|length=1112bp
GTCAGACTTAAAAACACTGTCGGCTGAAACTTTACAACATCAGTGCTCGA
CTTTCGAAGAAATTCATATAATTTTCGCACAATTAGTGATGAATAATTAT
TTGAGATGAATCCTAATGACttcaattatcattagaagtgaTTTCAAGAA
ATTTACTGTGTTGATCACAAAGATATTTTCGGATGTTGGTGTGGANATAA
TTTTCGCACAATTAGTGATGAATAATTATTTGAGATGAGTCCTAATGACt
tcaattatcattagaagtaatttcaagaaatttactGTGTTGATCACAAA
GATATCTTCGGATGTTGGTGTGGAATTTGTGTTACACTTTCACTCAAACT
AAATAGAAGATCTCAAGTAATTGATTTCAAGATTGGAGAAGAAGCAATAA
AGTCAAAGACACCAAGACACCCACCTGCTGGACACACATGGTGCAGCAGG
ACCGAGGACCGAGGACCAAGTAGACATCTCACCACAAACAAAGTTAACCG
AATCGTCTAGAAAAACTTCACGCATCAAATGAAATTCCATACATGCAACA
TGACATAGcattgtaatGACCAACAGAAGGATGGAACATAAGTGCCAAGA
GAATctggtcaatgaaatgaaaCGTTTGGCCGAACATACAATCAGATTTA
TATGATCAACAAAACTAGTTATGTCAACGGTATCAGACAAAAAGTATACC
AGTTAGAGGAAAGGAACTTTTTTCATGGAATATCTTAAAGTCTGTAAAGA
AGTCACAACGACTACCGCTTTTGATCAGGATAGAGATGAGTTTGGATTTT
ATTTGCCGTACAAGTATTACCAGATTCCAACCGAGAATCAAGCGATTTat
attgttttaaatgtttgagCAGAATTTTAAATCTTTAGACTCTCTTAAAT
GACTTCTAATTTTTATCTTGAAAGTCTGTAAAGAATTATACAgagtattt
ttttgtaaagagTTATAATTAAGTTTTGTCCacttttatttttggaaata
tttttgtcataaaCATCtgattttttatcatatttattgtttcaattttt
ttccaatgttatttttctaaatttttgtttttattttttcccaagCATTA
GTTGAAATTTTG Run BLAST on NCBI transcript from alignment at sc0000365:308967..311375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020729 ID=TCONS_00020729|Name=TCONS_00020729|organism=Clytia hemisphaerica|type=transcript|length=2409bp|location=Sequence derived from alignment at sc0000365:308967..311375+ (Clytia hemisphaerica)
GTCAGACTTAAAAACACTGTCGGCTGAAACTTTACAACATCAGTGCTCGA
CTTTCGAAGAAATTCATATAATTTTCGCACAATTAGTGATGAATAATTAT
TTGAGATGAATCCTAATGACttcaattatcattagaagtgaTTTCAAGAA
ATTTACTGTGTTGATCACAAAGATATTTTCGGATGTTGGTGTGGANATAA
TTTTCGCACAATTAGTGATGAATAATTATTTGAGATGAGTCCTAATGACt
tcaattatcattagaagtaatttcaagaaatttactGTGTTGATCACAAA
GATATCTTCGGATGTTGGTGTGGAATTTGTGTTACACTTTCACTCAAACT
AAATAGGTGAGTTGAAGGGCTACAGACGTATACTCGTTagcttttatata
tttttagacGAAATCCACTTGAACAGTTGATGGCAATCTTAAAGTTGAGA
TATTTTTTAGgcttattttgtaaaaatctttgtACTTTCAGATTTATAAT
ACTCTGTCTGCAAAATTGACATAGTGTCTCCTGACATAATAATATGAGGT
GGattgtacatttttattttgtgaagcAGGCTGTGATCGGCGATAGAtac
aattctcatttttatcttcCGACTTGGTTTCAGTGTGACTGTAAAATTAT
AATATTGCCATTggatgtattttttatttaagagaTTGGGTGCCTTTTCA
ATCTTAAATCTACCTTCTTTTTAGAAGATCTCAAGTAATTGATTTCAAGA
TTGGAGAAGAAGCAATAAAGTCAAAGACACCAAGACACCCACCTGCTGGA
CACACATGGTACGTTGAATTTTCCAATAAATGAATTTTTACTATCCAATG
ACACCATGTATTTACCGGTGATTCACCGTTTGACAAGTAACTTGCCAAAA
ATGATCGCATGTGAAAAGTATTCTTACATttggttttcttgaaatatcat
gattttgcatgatatttACTACCCAATGACACTATTTATTTACTGGCAAT
TCACCGTTTGACAAGTAACTTGCCAAAAATGATCGCATGTGAAAAGTATT
CTTACATTTGGTTTTCTTGAAATTATGATTTTGCAAGAGTTTTTACTACC
CAATGACACTATTTATTTACCGGCGATTCACCGTTTGACAAGTAACTTGC
AAAAAATGATCGCATGTGAAACATATTCTTACATTTGGTTTTCTTGAAAT
TATGATTTTGCAAGAGTTTTTAAATGACACTTACCAGCAATTCACCGGTT
GACAAGTAACTTGCCAAAAATGATCGCACGTCCTGGCACGTCAAACATAT
TCTTACatttggttttgaaattttgctgctttagTCAGGCATTTGAGAGT
TTCCCTCCACTGTAAGTTACCAGTTCTGATGGTACATAATCAGAAAATTA
TAACAAACTTCGCACATTTTCAGGTGCAGCAGGACCGAGGACCGAGGACC
AAGTAGACATCTCACCACAAACAAAGTTAACCGAATCGTCTAGAAAAACT
TCACGCATCAAATGAAATTCCATACATGCAACATGACATAGGTATGTATG
TTATATTTGTTTTATTCTTATGTTTTCATTTAAACATTGTTGCATTGATC
CTGGTGAACCTGTCAGACTATGTTATCTTTCAAACATTCTGTTTTCGGGC
AGACAGGTTGTCAAGAATCTGTTGTGTCCTTCTTTTCCTTCCAGAGGATA
CTTCCCTACTTCTCCAATGGCCTTTTCATATGAATAATTTATGCTTGGCC
TACTTCTCCAGCAGTTCCAAGTTTTTCCATTATGTCACTCTTAAAGATTT
AAAAGGAACTAGTTCCAAGATTGTAAGTCAAATtgattttctgtattttt
tttagcattgtaatGACCAACAGAAGGATGGAACATAAGTGCCAAGAGAA
TctggtcaatgaaatgaaaCGTTTGGCCGAACATACAATCAGATTTATAT
GATCAACAAAACTAGTTATGTCAACGGTATCAGACAAAAAGTATACCAGT
TAGAGGAAAGGAACTTTTTTCATGGAATATCTTAAAGTCTGTAAAGAAGT
CACAACGACTACCGCTTTTGATCAGGATAGAGATGAGTTTGGATTTTATT
TGCCGTACAAGTATTACCAGATTCCAACCGAGAATCAAGCGATTTatatt
gttttaaatgtttgagCAGAATTTTAAATCTTTAGACTCTCTTAAATGAC
TTCTAATTTTTATCTTGAAAGTCTGTAAAGAATTATACAgagtatttttt
tgtaaagagTTATAATTAAGTTTTGTCCacttttatttttggaaatattt
ttgtcataaaCATCtgattttttatcatatttattgtttcaatttttttc
caatgttatttttctaaatttttgtttttattttttcccaagCATTAGTT
GAAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020729-exon-sc0000365-1491911889:308967..309322 | TCONS_00020729-exon-sc0000365-1491911889:308967..309322 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1510915933:308967..309322 | TCONS_00020729-exon-sc0000365-1510915933:308967..309322 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1575043694:308967..309322 | TCONS_00020729-exon-sc0000365-1575043694:308967..309322 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1491911889:309691..309774 | TCONS_00020729-exon-sc0000365-1491911889:309691..309774 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1510915933:309691..309774 | TCONS_00020729-exon-sc0000365-1510915933:309691..309774 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1575043694:309691..309774 | TCONS_00020729-exon-sc0000365-1575043694:309691..309774 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1491911889:310390..310507 | TCONS_00020729-exon-sc0000365-1491911889:310390..310507 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1510915933:310390..310507 | TCONS_00020729-exon-sc0000365-1510915933:310390..310507 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1575043694:310390..310507 | TCONS_00020729-exon-sc0000365-1575043694:310390..310507 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1491911889:310822..311375 | TCONS_00020729-exon-sc0000365-1491911889:310822..311375 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1510915933:310822..311375 | TCONS_00020729-exon-sc0000365-1510915933:310822..311375 | Clytia hemisphaerica | exon |
| TCONS_00020729-exon-sc0000365-1575043694:310822..311375 | TCONS_00020729-exon-sc0000365-1575043694:310822..311375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365 | supercontig | sc0000365:308967..311375 + |
Blast
The following BLAST results are available for this feature:
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