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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020724 ID=TCONS_00020724|Name=TCONS_00020724|organism=Clytia hemisphaerica|type=transcript|length=1265bp
AGGACTGAGGATGCAGTATCATGAAGTGATTTCTCCAAGGATTCGTACTC
TACGCGATCAAGAGATTGTAATTTTGAAGATAGGGAGTCGATAAATGTAT
TACGCAATTCACGATCAACAAGCAGTTTATTAGAGTCAATATTGGAAAGT
GGACGCGTTGTTGGTGATTTTTTGATGAAACGAGCTCCTATTCGTAATTT
CATCCTCGCAGAGAGGTGATCTGAATCAAGTAATGGTTTTGAAGCAAACA
CATCAACAACACGTCGAAAATCAGTTTTTAGTACAAGTAGATGATCAATC
TGATGCGGTAGTTTAGATCGAGGGTGTCTCCACGTTGCGTAGTTCTTTTT
ACGGAAATAGGTACTACAAGCGACGAGACGATTGATTTCAAGGAAGGTAG
TAAGTCTTGTACCAGCATAATTACTATGAGGTAGACCAAATTTGCCTACT
GAAGATATTTCAATCCCACTTCTCTCATAACTAATTCCGAGGAAGAATTG
GTATCACAACCAACGATTAAAATATCTTTCGGACGTTTCGAGTTTATACA
GTTCTCAAGATTCTGAAGAAAAGTGTCCCACAAAAGTGCGTCTGCAACTC
CTATAGGGGCGTAAGCTGAGACGAGAAAGATATCGATAATCTTGTCACGA
TTGTCTTTTAACGAAAGTCTggtcgcaattattcgatttcCAAATTCGGT
GAAAATGGGTGCGCCTGCTTCTTTCCAAGCTTGGGTTGCAGTTTTGTTAA
GTACGATACCGACACCACCTTGTCCTCGTTTGCTTTTGTTTTCGGATGCA
TTTAACCCATTCAAAATAAAGGTACAGTCATTTACGATCTCGACCGATTT
ACTGCTTTTCCATGTTTCTTGTAGACAAAGTGCAAATGTATTTTGTCGTT
TAATTTGGGTAGAAAGTTCATAAACCCTTTTCCGCAGTTTTAATTCCTCT
AGCATTTTGTGTAATAAAGTTCAGTTGCTTGAAATTCTTCGCTTTCTTTG
GCATGACAAAACTGGGGCTCGCGACACCACCAATATTGGTACTACGATGA
TCTTCTCCGATTGTGTGGCAGAAGCAAGTTACTTCCAGCTAATCACAACC
ACCAAATGAGTAGACCATCATGATAGTACAGCCATAAACATCTATGTGAG
CATCATGGTTGTTGTTGTTCTTCTGGGTGCGGCAGCTGACGGATCTAATG
ACACCGATTCAGGTGGCCGCCACaccctttttttgatttttggtttctat
aagaacaacttattc Run BLAST on NCBI protein sequence of TCONS_00020724-protein >TCONS_00020724-protein ID=TCONS_00020724-protein|Name=TCONS_00020724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MLEELKLRKRVYELSTQIKRQNTFALCLQETWKSSKSVEIVNDCTFILNG
LNASENKSKRGQGGVGIVLNKTATQAWKEAGAPIFTEFGNRIIATRLSLK
DNRDKIIDIFLVSAYAPIGVADALLWDTFLQNLENCINSKRPKDILIVGC
DTNSSSELVMREVGLKYLQ Run BLAST on NCBI transcript from alignment at sc0000363:292480..293744 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020724 ID=TCONS_00020724|Name=TCONS_00020724|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at sc0000363:292480..293744 (Clytia hemisphaerica)
gaataagttgttcttatagaaaccaaaaatcaaaaaaagggtGTGGCGGC
CACCTGAATCGGTGTCATTAGATCCGTCAGCTGCCGCACCCAGAAGAACA
ACAACAACCATGATGCTCACATAGATGTTTATGGCTGTACTATCATGATG
GTCTACTCATTTGGTGGTTGTGATTAGCTGGAAGTAACTTGCTTCTGCCA
CACAATCGGAGAAGATCATCGTAGTACCAATATTGGTGGTGTCGCGAGCC
CCAGTTTTGTCATGCCAAAGAAAGCGAAGAATTTCAAGCAACTGAACTTT
ATTACACAAAATGCTAGAGGAATTAAAACTGCGGAAAAGGGTTTATGAAC
TTTCTACCCAAATTAAACGACAAAATACATTTGCACTTTGTCTACAAGAA
ACATGGAAAAGCAGTAAATCGGTCGAGATCGTAAATGACTGTACCTTTAT
TTTGAATGGGTTAAATGCATCCGAAAACAAAAGCAAACGAGGACAAGGTG
GTGTCGGTATCGTACTTAACAAAACTGCAACCCAAGCTTGGAAAGAAGCA
GGCGCACCCATTTTCACCGAATTTGgaaatcgaataattgcgaccAGACT
TTCGTTAAAAGACAATCGTGACAAGATTATCGATATCTTTCTCGTCTCAG
CTTACGCCCCTATAGGAGTTGCAGACGCACTTTTGTGGGACACTTTTCTT
CAGAATCTTGAGAACTGTATAAACTCGAAACGTCCGAAAGATATTTTAAT
CGTTGGTTGTGATACCAATTCTTCCTCGGAATTAGTTATGAGAGAAGTGG
GATTGAAATATCTTCAGTAGGCAAATTTGGTCTACCTCATAGTAATTATG
CTGGTACAAGACTTACTACCTTCCTTGAAATCAATCGTCTCGTCGCTTGT
AGTACCTATTTCCGTAAAAAGAACTACGCAACGTGGAGACACCCTCGATC
TAAACTACCGCATCAGATTGATCATCTACTTGTACTAAAAACTGATTTTC
GACGTGTTGTTGATGTGTTTGCTTCAAAACCATTACTTGATTCAGATCAC
CTCTCTGCGAGGATGAAATTACGAATAGGAGCTCGTTTCATCAAAAAATC
ACCAACAACGCGTCCACTTTCCAATATTGACTCTAATAAACTGCTTGTTG
ATCGTGAATTGCGTAATACATTTATCGACTCCCTATCTTCAAAATTACAA
TCTCTTGATCGCGTAGAGTACGAATCCTTGGAGAAATCACTTCATGATAC
TGCATCCTCAGTCCT Coding sequence (CDS) from alignment at sc0000363:292480..293744 >TCONS_00020724 ID=TCONS_00020724|Name=TCONS_00020724|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0000363:292480..293744 (Clytia hemisphaerica)
ATGCTAGAGGAATTAAAACTGCGGAAAAGGGTTTATGAACTTTCTACCCA
AATTAAACGACAAAATACATTTGCACTTTGTCTACAAGAAACATGGAAAA
GCAGTAAATCGGTCGAGATCGTAAATGACTGTACCTTTATTTTGAATGGG
TTAAATGCATCCGAAAACAAAAGCAAACGAGGACAAGGTGGTGTCGGTAT
CGTACTTAACAAAACTGCAACCCAAGCTTGGAAAGAAGCAGGCGCACCCA
TTTTCACCGAATTTGgaaatcgaataattgcgaccAGACTTTCGTTAAAA
GACAATCGTGACAAGATTATCGATATCTTTCTCGTCTCAGCTTACGCCCC
TATAGGAGTTGCAGACGCACTTTTGTGGGACACTTTTCTTCAGAATCTTG
AGAACTGTATAAACTCGAAACGTCCGAAAGATATTTTAATCGTTGGTTGT
GATACCAATTCTTCCTCGGAATTAGTTATGAGAGAAGTGGGATTGAAATA
TCTTCAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020724-exon-sc0000363-1491911889:292480..293744 | TCONS_00020724-exon-sc0000363-1491911889:292480..293744 | Clytia hemisphaerica | exon |
| TCONS_00020724-exon-sc0000363-1510915933:292480..293744 | TCONS_00020724-exon-sc0000363-1510915933:292480..293744 | Clytia hemisphaerica | exon |
| TCONS_00020724-exon-sc0000363-1575043694:292480..293744 | TCONS_00020724-exon-sc0000363-1575043694:292480..293744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000363 | supercontig | sc0000363:292480..293744 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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