TCONS_00020719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020719
Unique NameTCONS_00020719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020719 ID=TCONS_00020719|Name=TCONS_00020719|organism=Clytia hemisphaerica|type=transcript|length=536bp
CAAAACGACAAAAAGAGCTGACCCAATGGTAATACATATTGAATAAAAAC
TTCCAAAAGAAAACcaataaatttggaaaatctcgATAGGTGAAGATATT
GAGGAAAATGAGTAGTTTCCAAAAGTAGCCATCACGGATGCGATTAAAAA
TTCAAATAGAAGTATAATGAAGACTAATTTTCCGCTGATTCTTGTTAAAG
GTGATGTGATTGAGATAAATCGAAAGATTCCAATCGTAGCTAGTAACATG
AAATCGTAATTTAGGAAAGTCATCAAAATAGCATCTCCGATAACTTCGTG
TAGACACTTTAGAGGTAGAAATTCGGACATTGCATAGTAAAGTTGAGTTA
AACCTGTAGCCAACCCgcaacacgatgaaatcaaaaacattttttgagga
AGTCGTAAAGTTTTGTTAGCCTTCAAAATACCCCAAATTACTAACAAGTT
TGATGTCAGGATAAGGCAAGTGTTCATAAAGTAAAATATCTTGATGTAGA
TTCGCTGGTCGTTCCATTTCTTAGTTATTGCGTTCG
Run BLAST on NCBI

protein sequence of TCONS_00020719-protein

>TCONS_00020719-protein ID=TCONS_00020719-protein|Name=TCONS_00020719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
NAITKKWNDQRIYIKIFYFMNTCLILTSNLLVIWGILKANKTLRLPQKMF
LISSCCGLATGLTQLYYAMSEFLPLKCLHEVIGDAILMTFLNYDFMLLAT
IGIFRFISITSPLTRISGKLVFIILLFEFLIASVMATFGNYSFSSISSPI
EIFQIYWFSFGSFYSICITIGSALFVVL
Run BLAST on NCBI

transcript from alignment at sc0000363:80193..80728

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020719 ID=TCONS_00020719|Name=TCONS_00020719|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0000363:80193..80728 (Clytia hemisphaerica)
CGAACGCAATAACTAAGAAATGGAACGACCAGCGAATCTACATCAAGATA
TTTTACTTTATGAACACTTGCCTTATCCTGACATCAAACTTGTTAGTAAT
TTGGGGTATTTTGAAGGCTAACAAAACTTTACGACTtcctcaaaaaatgt
ttttgatttcatcgtgttgcGGGTTGGCTACAGGTTTAACTCAACTTTAC
TATGCAATGTCCGAATTTCTACCTCTAAAGTGTCTACACGAAGTTATCGG
AGATGCTATTTTGATGACTTTCCTAAATTACGATTTCATGTTACTAGCTA
CGATTGGAATCTTTCGATTTATCTCAATCACATCACCTTTAACAAGAATC
AGCGGAAAATTAGTCTTCATTATACTTCTATTTGAATTTTTAATCGCATC
CGTGATGGCTACTTTTGGAAACTACTCATTTTCCTCAATATCTTCACCTA
TcgagattttccaaatttattgGTTTTCTTTTGGAAGTTTTTATTCAATA
TGTATTACCATTGGGTCAGCTCTTTTTGTCGTTTTG

Coding sequence (CDS) from alignment at sc0000363:80193..80728

>TCONS_00020719 ID=TCONS_00020719|Name=TCONS_00020719|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0000363:80193..80728 (Clytia hemisphaerica)
AACGCAATAACTAAGAAATGGAACGACCAGCGAATCTACATCAAGATATT
TTACTTTATGAACACTTGCCTTATCCTGACATCAAACTTGTTAGTAATTT
GGGGTATTTTGAAGGCTAACAAAACTTTACGACTtcctcaaaaaatgttt
ttgatttcatcgtgttgcGGGTTGGCTACAGGTTTAACTCAACTTTACTA
TGCAATGTCCGAATTTCTACCTCTAAAGTGTCTACACGAAGTTATCGGAG
ATGCTATTTTGATGACTTTCCTAAATTACGATTTCATGTTACTAGCTACG
ATTGGAATCTTTCGATTTATCTCAATCACATCACCTTTAACAAGAATCAG
CGGAAAATTAGTCTTCATTATACTTCTATTTGAATTTTTAATCGCATCCG
TGATGGCTACTTTTGGAAACTACTCATTTTCCTCAATATCTTCACCTATc
gagattttccaaatttattgGTTTTCTTTTGGAAGTTTTTATTCAATATG
TATTACCATTGGGTCAGCTCTTTTTGTCGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011621XLOC_011621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020719-exon-sc0000363-1491911889:80193..80728TCONS_00020719-exon-sc0000363-1491911889:80193..80728Clytia hemisphaericaexon
TCONS_00020719-exon-sc0000363-1510915933:80193..80728TCONS_00020719-exon-sc0000363-1510915933:80193..80728Clytia hemisphaericaexon
TCONS_00020719-exon-sc0000363-1575043694:80193..80728TCONS_00020719-exon-sc0000363-1575043694:80193..80728Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020719-proteinTCONS_00020719-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:80193..80728 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325484	0	0	0	0	0	0.418461	0.130586	0	0	0	0	0	0	0	0	0.488679	0	1.61465	1.44824	0.209798	0.153498	0	0.226191	0.116486	0.311883	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top