TCONS_00020717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020717
Unique NameTCONS_00020717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020717 ID=TCONS_00020717|Name=TCONS_00020717|organism=Clytia hemisphaerica|type=transcript|length=224bp
TGACCCGTCAAAGCGGGATGCTAAGCAAGGGAATCTGTGTGCGGGAGAAG
CAGGTTCGGTAATTAACCTAAGCTAATAAATTAGCTCCAATTAATTATCT
GACCTGTGGGCAACGATTGATAAAACGGTTCGAAATAAACACTGTAAAAG
TATCATGAGTAGTATTCCAAAATGATGATCCTGTTTTACCTAATGGGGAT
CGAATGATAAGGCtggattaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000363:64143..64366

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020717 ID=TCONS_00020717|Name=TCONS_00020717|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at sc0000363:64143..64366 (Clytia hemisphaerica)
tttttaatccaGCCTTATCATTCGATCCCCATTAGGTAAAACAGGATCAT
CATTTTGGAATACTACTCATGATACTTTTACAGTGTTTATTTCGAACCGT
TTTATCAATCGTTGCCCACAGGTCAGATAATTAATTGGAGCTAATTTATT
AGCTTAGGTTAATTACCGAACCTGCTTCTCCCGCACACAGATTCCCTTGC
TTAGCATCCCGCTTTGACGGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011619XLOC_011619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020717-exon-sc0000363-1491911889:64143..64366TCONS_00020717-exon-sc0000363-1491911889:64143..64366Clytia hemisphaericaexon
TCONS_00020717-exon-sc0000363-1510915933:64143..64366TCONS_00020717-exon-sc0000363-1510915933:64143..64366Clytia hemisphaericaexon
TCONS_00020717-exon-sc0000363-1575043694:64143..64366TCONS_00020717-exon-sc0000363-1575043694:64143..64366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:64143..64366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	2.57423	15.6694	7.4293	4.48157	18.1809	4.89572	4.85131	5.886	2.32153	3.86385	4.01264	1.97936	7.08053	1.74453	8.94042	1.23517	6.46257	3.37029	0	2.66451	0	12.4752	12.2472	9.55949	3.40072	5.15865	5.25584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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